These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4741#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 640 fasta sequence [TGGAAGGTTGGATTTGTTTAAAATGAATAGGTAAGTGTAAAAGTTTCACGCGTGTGATCGAACGACCGATCGATGTTTACTCACCTAAACCATTAACGTTTATCGAAAAATTCGTTTTGACTCCTAATAGTTCCTCTGAAATAATGAAAATCAAAAGGGATGTTTAAATATACTTTTGAACACGAACTGACGCTTTATACAAGTTGTCGTCTCCATTCAAAGTTTTAAAAGAACCGGAGTTGTTAAATGCTAAACCATCTCTCATGAGAAAAGTCTAAAGAATATTATCAATTCAACAATATGATGAACGTTTCAACACAATCAACTGAGAAGAATATTTCAATTCTTTTAAATTTGTTCTCGAAGCTTCTTACAGAATAAATGACGTTTAATAGGTACTCGACAATACAAGAATAATGTGTTTTTTGGATCCCTTTATTCATCAATTCTTACGTCTGACCGAAATAAATAAATGTCACTTTGATGTTTTACGTGTTCTGGTATAAGTTAGTCATCTGGTACTAGCGGACTGTTCAAGCACGTTCACTGGTCAGCTGTTTCATGAAGTGCATGGATTCGAAATGCATAACCATACANATGCGATCAAAAAATAGTCTTGAATAATCGAATNNAT-ACACAC] [+] EMBL CD160779 [TGGAAGGTTGGATTTGTTTAAAATGAATAGGTAAGTGTAAAAGTTTCACGCGTGTGATCGAACGACCGATCGATGTTTACTCACCTAAACCATTAACGTTTATCGAAAAATTCGTTTTGACTCCTAATAGTTCCTCTGAAATAATGAAAATCAAAAGGGATGTTTAAATATACTTTTGAACACGAACTGACGCTTTATACAAGTTGTCGTCTCCATTCAAAGTTTTAAAAGAACCGGAGTTGTTAAATGCTAAACCATCTCTCATGAGAAAAGTCTAAAGAATATTATCAATTCAACAATATGATGAACGTTTCAACACAATCAACTGAGAAGAATATTTCAATTCTTTTAAATTTGTTCTCGAAGCTTCTTACAGAATAAATGACGTTTAATAGGTACTCGACAATACAAGAATAATGTGTTTTTTGGATCCCTTTATTCATCAATTCTTACGTCTGACCGAAATAAATAAATGTCACTTTGATGTTTTACGTGTTCTGGTATAAGTTAGTCATCTGGTACTAGCGGACTGTTCAAGCACGTTCACTGGTCAGCTGTTTCATGAAGTGCATGGATTCGAAATGCATAACCATACANATGCGATCAAAAAATAGTCTTGAATAATCGAATNNAT ACACA ] [-] EMBL CD160759 [ gTTAAAATGAATAGGTAAGTGT AAAGTTTCACGCGTGTGATCGAACGACCGATCGATGTTTACTCACCTAAACCATTAACGTTTATCGAAANATTCGTTTTGACTCCTAATAGTTCCTCTGAAATAATGANAATCAAAAGGGATGTTTAAATATACTTTTGAACACGAACTGACGCTTTATACGAGTTGTCGTCTCCATTCAAAGTTTTAAAAGAACCGGAGTTGTTAAATGCTAAACCATCTCTCATGAGAAAAGTCTAAAGAATATTATCAATTCAACAATATGATGAACGTTTCAACACAATCAACTGAGAAGAATATTTCAATTCTTTTAAATTTGTTCTCGAAGCTTCTTACAGAATAAATGACGTTTAATAGGTACCCGACAATACAAGAATAATGTGTTTTTTGGATCCCTTTATTCATCAATTCTTACGTTTGACCGAAATAAATGAATGTCACTTTGATGTTTTACGTGTTCTGGTATAAGTTAGTCATCTGGTACTAGCGGACTGTTCAAGCACGTTCACTGGTCAGCTGTTTCATGAAGTGCATGGATTCGAAATGCATAACCATACAAATGCGATCAAAAAATAGTCTTGAATAATCGAAT AATAACACAC] consensusID : consensus_4741#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 504 fasta sequence [TGTCGGTGGGTAGGCATTATATAACGTGGGTAAGAACCGATGTTAATTGATTTTGAATATTTTCTGTCTATTTACTATAACTTGTTTGCTAAATACAGGTTTTTATAGTTGGGTTTAGGAATCTTATTTATTATATGAAGTGTAGTGACCTAACTTGGTTGCCTTAATCAAAGTGTTTAGGAGAATTACTAATTGGTTGAAACACTTGGCTTTAAGATATTTAGTTTCAGATTGAAGTACCATTCTATCTCCTGGGAGTTGGATATCTGGATGATATCGCTGTTTTTTTCCCATTCCGTCTTCGCACACCTTTTCCTCCATTACCATTATTGCCACTACAATTATTTGGTATCCTTTGGTATTTGTCTTGTTGACTTCACTTTGTTCTACCAAATTCTAATCTTCTGAATTCTTCATGTCTCTATCTTTTTTCTCTTTCCAAATTTATTTCATTGGATTATATTCCTTCAATAACGTCTTCAAACTCCAATCTTTCACAAAATG] [+] EMBL CD088356 [TGTCGGTGGGTAGGCATTATATAACGTGGGTAAGAACCGATGTTAATTGATTTTGAATATTTTCTGTCTATTTACTATAACTTGTTTGCTAAATACAGGTTTTTATAGTTGGGTTTAGGAATCTTATTTATTATATGAAGTGTAGTGACCTAACTTGGTTGCCTTAATCAAAGTGTTTAGGAGAATTACTAATTGGTTGAAACACTTGGCTTTAAGATATTTAGTTTCAGATTGAAGTACCATTCTATCTCCTGGGAGTTGGATATCTGGATGATATCGCTGTTTTTTTCCCATTCCGTCTTCGCACACCTTTTCCTCCATTACCATTATTGCCACTACAATTATTTGGTATCCTTTGGTATTTGTCTTGTTGACTTCACTTTGTTCTACCAAATTCTAATCTTCTGAATTCTTCATGTCTCTATCTTTTTTCTCTTTCCAAATTTATTTCATTGGATTATATTCCTTCAATAACGTCTTCAAACTCCAATCTTTCACAAAATG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4741#0 TGGAAGGTTGGATTTGTTTAAAATGAATAGGTAAGTGTAAAAGTTTCACGCGTGTGATCG 60 consensus_4741#1 ------------------------------------------------------------ consensus_4741#0 AACGACCGATCGATGTTTACTCACCTAAACCATTAACGTTTATCGAAAAATTCGTTTTGA 120 consensus_4741#1 ---------------------------------------------------------TGT 3 ** consensus_4741#0 CTCCTAATAGTTCCTCTGAAATAATGAAAATCAAAAGGGATGTTTAAATATACTTTTGAA 180 consensus_4741#1 CGGTGGGTAGGCATTAT---ATAACGTGGGTAAGAACCGATGTT--AAT-TGATTTTGAA 57 * *** * * **** * * * ** ****** *** * ******* consensus_4741#0 CACGAACTGACGCTTTA-TACAAGTTGTCGTCTCCATTCAAAGTTTTAAAA---GAACCG 236 consensus_4741#1 TATTTTCTGTCTATTTACTATAACTTGTTTGCTAAATACAGGTTTTTATAGTTGGGTTTA 117 * *** * **** ** ** **** ** ** ** ***** * * consensus_4741#0 GAGTTGTTAAATGCTAAACCATCTCTCATGAGAAAAGTCTAAAGAATATTATCAA----T 292 consensus_4741#1 GGAATCTTATTTATTATATGAAGTGTAGTGACCTAA-CTTGGTTGCCTTAATCAAAGTGT 176 * * *** * ** * * * * *** ** * * ***** * consensus_4741#0 TCAACAATATGATGAACGTTTCAACACAATCAACTGAGAAGAATATTTCAATTCTTTTAA 352 consensus_4741#1 TTAGGAGAATTACTAATTGGTTGAAACACTTGGCTT--TAAGATATTTAG----TTTCAG 230 * * * ** * ** * * *** * ** * ****** *** * consensus_4741#0 ATTTGTTCTCGAAGCTTCTTACAGAATAAATGACGTTTAATAGGTACTCGACAATACAAG 412 consensus_4741#1 ATTGAAGTACCATTCTATCTCCTGGGAGTTGGATATCTGGATGATA-TCGCTGTTTTTTT 289 *** * * ** * * * ** * * * ** *** * consensus_4741#0 AATAATGTGTTTTTTGGATCCCTTTATTCATCAATTCTTACGTCTGACCGAAATAAATAA 472 consensus_4741#1 CCCATTCCGTCTTCGCACACCTTTTCCTCCATTACCATTAT-TGCCACTACAATTATTTG 348 * * ** ** ** *** ** * *** * ** *** * * consensus_4741#0 ATGTCACTTTGATGTTTTACGTGTTCTGGTATAAGTTAGTC--ATCTGGTACTAGCGGAC 530 consensus_4741#1 GTATC-CTTTGGTATTTGTCTTGTT--GACTTCACTTTGTTCTACCAAATTCTAATCTTC 405 * ** ***** * *** * **** * * * ** ** * * * *** * consensus_4741#0 TGT-TCAAGCACGTTCACTGGTCAGCTGTTTCATGAAGTGCATGGATTCGAAATGCATAA 589 consensus_4741#1 TGAATTCTTCATGTCTCTATCTTTTTTCTCTTTCCAAATTTATTTCATTGGATTATATTC 465 ** * ** ** * * * * ** * ** * * * * ** consensus_4741#0 CCATACANATGCGATCAAAAAATAGTCTTGAATAATCGAATNNATACACAC 640 consensus_4741#1 CTTCAATAACGTCTTCAAACTCCAATCTTTCACAA---AATG--------- 504 * * * * ***** * **** * ** *** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||