cluster # 4744

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 4744 cluster # 4744 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4744#0 length = 343 sequences # 2

consensus_4744#1 length = 281 sequences # 1

consensusID : consensus_4744#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 343
fasta sequence

                              [AAGTAAGAGCATGTTCCGTGTTTTTGTGCAGCAGAATTGTTTCATAAAAGGAGTTACGGGACTTAAGTGTAGATCCTCCAACCCAGTGTTCAGCTGGACCTATTCACGATGATCGTAAGTTCA-TATTTGTTTGTCCTGGTTTACATTTAGTATTTGCCTGGCAAGCCACTATTATGGGACCTGCTGATAGTCCATATGAAGGTGGAGTCTTTTCCCTGAAAATACTATTTCCCACAGATTATCCTTTCAAACCCCCTAAGATCAGTTTCATGACGAAGATATATCATCCGAATATAAATCCCAGTGGTAGTATCTGCTTAGATATCCTCCGGGGTCAGTGGTC]

[+] EMBL CD092723             [AAGTAAGAGCATGTTCCGTGTTTTTGTGCAGCAGAATTGTTTCATAAAAGGAGTTACGGGACTTAAGTGTAGATCCTCCAACCCAGTGTTCAGCTGGACCTATTCACGATGATCGTAAGTTCA TATTTGTTTGTCCTGGTTTACATTTAGTATTTGCCTGGCAAGCCACTATTATGGGACCTGCTGATAGTCCATATGAAGGTGGAGTCTTTTCCCTGAAAATACTATTTCCCACAGATTATCCTTTCAAACCCCCTAAGATCAGTTTCATGACGAAGATATATCATCCGAATATAAATCCCAGTGGTAGTATCTGCTTAGATATCCTCCGGGGTCAGTGGTC]
[-] EMBL BG931905             [              TCCGTGTTTTTGTGCAGCAGAATTGTTTCATAAAAGGAGTTACAGGACTTAAGTGTAGATCCTCCAACCCAGTGTTCAGCTGGTCCCTGTGAAGATGATCGTAAG TCAGTGTGCGTTT TCTCAGTTTACATATAGTATTTGTCTGGCAAGCCACTATTATGGGACCTGCTGATAGTCCATATGAAGGTGGAGTCTTTTCCCTGAAAATACTATTTCCCACAGATTATCCTTTCAAACCCCCTAAGGTCAGTTTCATGACGAAGATATATCATCCGAATATAAATCCCAATGGTAGTATCTGCTTAGATATCCTTCGGGGTCAGTGac ]




>consensus_4744#0
AAGTAAGAGCATGTTCCGTGTTTTTGTGCAGCAGAATTGTTTCATAAAAGGAGTTACGGG
ACTTAAGTGTAGATCCTCCAACCCAGTGTTCAGCTGGACCTATTCACGATGATCGTAAGT
TCATATTTGTTTGTCCTGGTTTACATTTAGTATTTGCCTGGCAAGCCACTATTATGGGAC
CTGCTGATAGTCCATATGAAGGTGGAGTCTTTTCCCTGAAAATACTATTTCCCACAGATT
ATCCTTTCAAACCCCCTAAGATCAGTTTCATGACGAAGATATATCATCCGAATATAAATC
CCAGTGGTAGTATCTGCTTAGATATCCTCCGGGGTCAGTGGTC

consensusID : consensus_4744#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 281
fasta sequence

                              [AGAGTTACAGGACTTAAGTGTAGATCCTCCAACCCAGTGTTCAGCTGGTCCCTGTGAAGATGATCGTAAGTCAGTGTGCGTTTTCTCAGTTTACATATAGTATTTGTCTGGCAAGCCACTATTATGGGACCTGCTGATAGTCCATATGAAGGTGGAGTCTTTTCCCTGAAAATACTATTTCCCACAGATTATCCTTTCAAACCCCCTAAGGTCAGTTTCATGACGAAGATATATCATCCGAATATAAATCCCAATGGTAGTATCTGCTTAGATATCCTCCG]

[-] EMBL CD092786             [AGAGTTACAGGACTTAAGTGTAGATCCTCCAACCCAGTGTTCAGCTGGTCCCTGTGAAGATGATCGTAAGTCAGTGTGCGTTTTCTCAGTTTACATATAGTATTTGTCTGGCAAGCCACTATTATGGGACCTGCTGATAGTCCATATGAAGGTGGAGTCTTTTCCCTGAAAATACTATTTCCCACAGATTATCCTTTCAAACCCCCTAAGGTCAGTTTCATGACGAAGATATATCATCCGAATATAAATCCCAATGGTAGTATCTGCTTAGATATCCTCCG]




>consensus_4744#1
AGAGTTACAGGACTTAAGTGTAGATCCTCCAACCCAGTGTTCAGCTGGTCCCTGTGAAGA
TGATCGTAAGTCAGTGTGCGTTTTCTCAGTTTACATATAGTATTTGTCTGGCAAGCCACT
ATTATGGGACCTGCTGATAGTCCATATGAAGGTGGAGTCTTTTCCCTGAAAATACTATTT
CCCACAGATTATCCTTTCAAACCCCCTAAGGTCAGTTTCATGACGAAGATATATCATCCG
AATATAAATCCCAATGGTAGTATCTGCTTAGATATCCTCCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4744#0      AAGTAAGAGCATGTTCCGTGTTTTTGTGCAGCAGAATTGTTTCATAAAAGGAGTTACGGG 60
consensus_4744#1      -------------------------------------------------AGAGTTACAGG 11
                                                                        ******* **

consensus_4744#0      ACTTAAGTGTAGATCCTCCAACCCAGTGTTCAGCTGGACCTATTCACGATGATCGTAAGT 120
consensus_4744#1      ACTTAAGTGTAGATCCTCCAACCCAGTGTTCAGCTGGTCCCTGTGAAGATGATCGTAAGT 71
                      ************************************* **   * * *************

consensus_4744#0      TCATATTTGTTTGTCCTGGTTTACATTTAGTATTTGCCTGGCAAGCCACTATTATGGGAC 180
consensus_4744#1      CAGTGTGCGTTT-TCTCAGTTTACATATAGTATTTGTCTGGCAAGCCACTATTATGGGAC 130
                         * *  **** **   ******** ********* ***********************

consensus_4744#0      CTGCTGATAGTCCATATGAAGGTGGAGTCTTTTCCCTGAAAATACTATTTCCCACAGATT 240
consensus_4744#1      CTGCTGATAGTCCATATGAAGGTGGAGTCTTTTCCCTGAAAATACTATTTCCCACAGATT 190
                      ************************************************************

consensus_4744#0      ATCCTTTCAAACCCCCTAAGATCAGTTTCATGACGAAGATATATCATCCGAATATAAATC 300
consensus_4744#1      ATCCTTTCAAACCCCCTAAGGTCAGTTTCATGACGAAGATATATCATCCGAATATAAATC 250
                      ******************** ***************************************

consensus_4744#0      CCAGTGGTAGTATCTGCTTAGATATCCTCCGGGGTCAGTGGTC 343
consensus_4744#1      CCAATGGTAGTATCTGCTTAGATATCCTCCG------------ 281
                      *** ***************************