cluster # 4747

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Schistosoma mansoni
cluster # 4747 cluster # 4747 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4747#0 length = 697 sequences # 1

consensus_4747#1 length = 407 sequences # 1
consensus_4747#2 length = 241 sequences # 1

consensusID : consensus_4747#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 697
fasta sequence

                              [CCAAGAATTCGGCACGAGGGCCGAATAAGCGGGCGATAGTAATGTCTGACTTGTGCCGTTTAGTAAAGGAGATAGGAATCGAGGTTCAACAACTTTCCAGTCAGGTCGAGCTAGAGAAGAACAATATATCACATCTTCAACAAAAGCTAATTTCTTTAACTCAAGAAGCTGAGTCTCAAAAAAAGTTCAAGCAGCATCTAGAGGAAGAGTTAAGGAATTTAGAGGAAACATATTTTCAGCCAGATGATTACAGCTGTGGTCTTTCAGACGTCAGTGAAGTAATAAATGAACAAATTCGTTGCCTTAACGTAATCCTTTCAGAGATCATGAGCAGTAATGAGCGAATTAGGAAAGAAAGAATTGACTTTATCCTGGAATACAAACAAAAGCTAGATGATTACAACCGACATATAGCACAAAATGAAAAGCTACACGCCTTTATCGAGTTGTGGAAAGTGAAATGTACTGAAAACTTTAAGCTGACTGCGATTCCTGATGTGATAAGAGAAATAGCTGAAGAAATATCCAGTTCCTACAACGTGTCTATTGTGGAGACACTAAAAAACGCACTAAGTGCATCAGCAGTAGAAAGCGAAGAAACAAGGATATCTTCCCCCCAAAATGTATGCATTGCGGAAAAAAAAGAGATTCCTGCGATTATTCCAAAAACTCAGTCAAATACTACATCGGATGAANC]

[+] EMBL CD081410             [CCAAGAATTCGGCACGAGGGCCGAATAAGCGGGCGATAGTAATGTCTGACTTGTGCCGTTTAGTAAAGGAGATAGGAATCGAGGTTCAACAACTTTCCAGTCAGGTCGAGCTAGAGAAGAACAATATATCACATCTTCAACAAAAGCTAATTTCTTTAACTCAAGAAGCTGAGTCTCAAAAAAAGTTCAAGCAGCATCTAGAGGAAGAGTTAAGGAATTTAGAGGAAACATATTTTCAGCCAGATGATTACAGCTGTGGTCTTTCAGACGTCAGTGAAGTAATAAATGAACAAATTCGTTGCCTTAACGTAATCCTTTCAGAGATCATGAGCAGTAATGAGCGAATTAGGAAAGAAAGAATTGACTTTATCCTGGAATACAAACAAAAGCTAGATGATTACAACCGACATATAGCACAAAATGAAAAGCTACACGCCTTTATCGAGTTGTGGAAAGTGAAATGTACTGAAAACTTTAAGCTGACTGCGATTCCTGATGTGATAAGAGAAATAGCTGAAGAAATATCCAGTTCCTACAACGTGTCTATTGTGGAGACACTAAAAAACGCACTAAGTGCATCAGCAGTAGAAAGCGAAGAAACAAGGATATCTTCCCCCCAAAATGTATGCATTGCGGAAAAAAAAGAGATTCCTGCGATTATTCCAAAAACTCAGTCAAATACTACATCGGATGAANC]




>consensus_4747#0
CCAAGAATTCGGCACGAGGGCCGAATAAGCGGGCGATAGTAATGTCTGACTTGTGCCGTT
TAGTAAAGGAGATAGGAATCGAGGTTCAACAACTTTCCAGTCAGGTCGAGCTAGAGAAGA
ACAATATATCACATCTTCAACAAAAGCTAATTTCTTTAACTCAAGAAGCTGAGTCTCAAA
AAAAGTTCAAGCAGCATCTAGAGGAAGAGTTAAGGAATTTAGAGGAAACATATTTTCAGC
CAGATGATTACAGCTGTGGTCTTTCAGACGTCAGTGAAGTAATAAATGAACAAATTCGTT
GCCTTAACGTAATCCTTTCAGAGATCATGAGCAGTAATGAGCGAATTAGGAAAGAAAGAA
TTGACTTTATCCTGGAATACAAACAAAAGCTAGATGATTACAACCGACATATAGCACAAA
ATGAAAAGCTACACGCCTTTATCGAGTTGTGGAAAGTGAAATGTACTGAAAACTTTAAGC
TGACTGCGATTCCTGATGTGATAAGAGAAATAGCTGAAGAAATATCCAGTTCCTACAACG
TGTCTATTGTGGAGACACTAAAAAACGCACTAAGTGCATCAGCAGTAGAAAGCGAAGAAA
CAAGGATATCTTCCCCCCAAAATGTATGCATTGCGGAAAAAAAAGAGATTCCTGCGATTA
TTCCAAAAACTCAGTCAAATACTACATCGGATGAANC

consensusID : consensus_4747#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 407
fasta sequence

                              [CGAGCTAGAGAAGAACAATATATCACATCTTCAACAAAAGCTAATTTCTTTAACTCAAGAAGCTGAGTCTCAAAAAAAAGTTCAAGCAGCATCTAGAGGAAGAGTTAAGGAATTTAGAGGAAACATATTTTCAGCCAGATGATTACAGCTGTGGTCTTTCAGACGTCAGTGAAGTAATAAATGAACAAATTCGTTGCCTTAACGTAATCCTTTCAGAGATCATGAGCAGTAATGAGCGAATTAGGTTACAGTTTCCCACTTAAGAATTACGAACAATCTGATACTCAACGAGACTGTACGATGAATATGGATGTAACGATATGTGGGGAAAATGATGCATCTTCTTATTAGATTTACAACTAGACATAATTTTTCTGTATAGTTGTTTATTGATATGCGCAATAAAG]

[-] EMBL CD128254             [CGAGCTAGAGAAGAACAATATATCACATCTTCAACAAAAGCTAATTTCTTTAACTCAAGAAGCTGAGTCTCAAAAAAAAGTTCAAGCAGCATCTAGAGGAAGAGTTAAGGAATTTAGAGGAAACATATTTTCAGCCAGATGATTACAGCTGTGGTCTTTCAGACGTCAGTGAAGTAATAAATGAACAAATTCGTTGCCTTAACGTAATCCTTTCAGAGATCATGAGCAGTAATGAGCGAATTAGGTTACAGTTTCCCACTTAAGAATTACGAACAATCTGATACTCAACGAGACTGTACGATGAATATGGATGTAACGATATGTGGGGAAAATGATGCATCTTCTTATTAGATTTACAACTAGACATAATTTTTCTGTATAGTTGTTTATTGATATGCGCAATAAAG]




>consensus_4747#1
CGAGCTAGAGAAGAACAATATATCACATCTTCAACAAAAGCTAATTTCTTTAACTCAAGA
AGCTGAGTCTCAAAAAAAAGTTCAAGCAGCATCTAGAGGAAGAGTTAAGGAATTTAGAGG
AAACATATTTTCAGCCAGATGATTACAGCTGTGGTCTTTCAGACGTCAGTGAAGTAATAA
ATGAACAAATTCGTTGCCTTAACGTAATCCTTTCAGAGATCATGAGCAGTAATGAGCGAA
TTAGGTTACAGTTTCCCACTTAAGAATTACGAACAATCTGATACTCAACGAGACTGTACG
ATGAATATGGATGTAACGATATGTGGGGAAAATGATGCATCTTCTTATTAGATTTACAAC
TAGACATAATTTTTCTGTATAGTTGTTTATTGATATGCGCAATAAAG

consensusID : consensus_4747#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 241
fasta sequence

                              [ATAAACTTTATGGCGCATATTCAATAACCAACTATAACAAAAAAATTTTGTCTAGTGGTAAATCTAATAAAAAAATGCTTCTTTTTCCCCACATATGGTTACATCCATATTCATCGAACAGTCTCGTTGAGTATCAAATGGTTCGTAATTTTTAAGGGGGAAACTGTAACTTTTTTTTTTTACAAGCGATGAAATCACCCTATTTTCAAGGGCAAACCCCCGTAAGCGACTTGCATCCAAA]

[+] EMBL CD075240             [ATAAACTTTATGGCGCATATTCAATAACCAACTATAACAAAAAAATTTTGTCTAGTGGTAAATCTAATAAAAAAATGCTTCTTTTTCCCCACATATGGTTACATCCATATTCATCGAACAGTCTCGTTGAGTATCAAATGGTTCGTAATTTTTAAGGGGGAAACTGTAACTTTTTTTTTTTACAAGCGATGAAATCACCCTATTTTCAAGGGCAAACCCCCGTAAGCGACTTGCATCCAAA]




>consensus_4747#2
ATAAACTTTATGGCGCATATTCAATAACCAACTATAACAAAAAAATTTTGTCTAGTGGTA
AATCTAATAAAAAAATGCTTCTTTTTCCCCACATATGGTTACATCCATATTCATCGAACA
GTCTCGTTGAGTATCAAATGGTTCGTAATTTTTAAGGGGGAAACTGTAACTTTTTTTTTT
TACAAGCGATGAAATCACCCTATTTTCAAGGGCAAACCCCCGTAAGCGACTTGCATCCAA
A

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4747#0      CCAAGAATTCGGCACGAGGGCCGAATAAGCGGGCGATAGTAATGTCTGACTTGTGCCGTT 60
consensus_4747#1      ------------------------------------------------------------
consensus_4747#2      ------------------------------------------------------------
                                                                                  

consensus_4747#0      TAGTAAAGGAGATAGGAATCGAGGTTCAACAACTTTCCAGTCAGGTCGAGCTAGAGAAGA 120
consensus_4747#1      ----------------------------------------------CGAGCTAGAGAAGA 14
consensus_4747#2      ------------------------------------------------------------
                                                                                  

consensus_4747#0      ACAATATATCACATCTTCAACAAAAGCTAATTTCTTTAACTCAAGAAGCTGAGTCTCAAA 180
consensus_4747#1      ACAATATATCACATCTTCAACAAAAGCTAATTTCTTTAACTCAAGAAGCTGAGTCTCAAA 74
consensus_4747#2      --------------------ATAAACTTTATGGCGCATATTCAATAA-CCAACTATAACA 39
                                            ***  * **  *    * **** ** *  * * * * *

consensus_4747#0      AAAA-GTTCAAGCAGCATCTAGAGGAAGAGTTAAGGAATTTAGAGGAAACATATTTTCAG 239
consensus_4747#1      AAAAAGTTCAAGCAGCATCTAGAGGAAGAGTTAAGGAATTTAGAGGAAACATATTTTCAG 134
consensus_4747#2      AAAAAATTT------TGTCTAGTGGTAAATCTAATAAA---AAAATGCTTCTTTTTCCCC 90
                      ****  **         ***** ** * *  ***  **   * *       * *** *  

consensus_4747#0      CCAGATGATTACAGCTGTGGTCTTTCAGACGTCA-GTGAAGTAATAAATGAACAAATTCG 298
consensus_4747#1      CCAGATGATTACAGCTGTGGTCTTTCAGACGTCA-GTGAAGTAATAAATGAACAAATTCG 193
consensus_4747#2      ACATATGGTTACATCCATATTCATCGAACAGTCTCGTTGAGTATCAAATG-----GTTCG 145
                       ** *** ***** *  *  ** *  *   ***  **  ****  *****      ****

consensus_4747#0      TTGCCTTAACGTAATCCTTTCAGAGATCATGAGCAGTAATGAGCGAATTAGGAAAGAAAG 358
consensus_4747#1      TTGCCTTAACGTAATCCTTTCAGAGATCATGAGCAGTAATGAGCGAATTAGG-------- 245
consensus_4747#2      TAATTTTTAAGGGGGAAACT--GTAACTTTTTTTTTTTACAAGCGA-TGAAA-------- 194
                      *    ** * *        *  *  *   *      * *  ***** * *          

consensus_4747#0      AATTGACTTTATCCTGGAATACAAACAAAAGCTAGATGATTACAACCGACATATAGCACA 418
consensus_4747#1      ---TTACAGTTTCCCACTTAAGAATTACGAACAATCTGATACTCAACGAGAC----TGTA 298
consensus_4747#2      ---TCACCCTATTTTCAAGGGCAAACCCCCGTAAGCGACTTGCATCCAAA---------- 241
                         * **  * *          **         *     *      * *           

consensus_4747#0      AAATGAAAAGCTACACGCCTTTATCGAGTTGTGGAAAGTGAAATGTACTGAAAACTTTAA 478
consensus_4747#1      CGATGAA------TATGGATGTAACGATATGTGGGGAAAATGATGCATCTTCT-TATTAG 351
consensus_4747#2      ------------------------------------------------------------
                                                                                  

consensus_4747#0      GCTGACTGCGATTCCTGATGTGATAAGAGAAATAGCTGAAGAAATATCCAGTTCCTACAA 538
consensus_4747#1      ATTTACAACTAGACATAATTTTTCTGTATAGTTGTTTATTGATATGCGCAATAAAG---- 407
consensus_4747#2      ------------------------------------------------------------
                                                                                  

consensus_4747#0      CGTGTCTATTGTGGAGACACTAAAAAACGCACTAAGTGCATCAGCAGTAGAAAGCGAAGA 598
consensus_4747#1      ------------------------------------------------------------
consensus_4747#2      ------------------------------------------------------------
                                                                                  

consensus_4747#0      AACAAGGATATCTTCCCCCCAAAATGTATGCATTGCGGAAAAAAAAGAGATTCCTGCGAT 658
consensus_4747#1      ------------------------------------------------------------
consensus_4747#2      ------------------------------------------------------------
                                                                                  

consensus_4747#0      TATTCCAAAAACTCAGTCAAATACTACATCGGATGAANC 697
consensus_4747#1      ---------------------------------------
consensus_4747#2      ---------------------------------------