These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4757#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 712 fasta sequence [GAACTGATTTACATTACTGATGGCACGTTGGTGTTTGTGGTTGACCATATAAGGGGCCTGCGTTCCGACTATGGAGATTGGTGTAGAGAGCACGAAGAACGAGTGCATGATTGTTTAGATGCTGTGGCAACAGGGTTGTCCCATGGTGTGGTTGAACACGTGGACCGTGAGTGTGAAACGATGACATGTCCAGAACACTTGGAGTCTACTGTTATGCTTGATAGCATTGTGCCACTACAGGAGTCTAATGAAGTTACGTCGATGCAGAGAGGAAAAGATTGGGATTCGGTAAATGAGATGAGCAGACTGTGTGACACCAATCGTGAGCTGTCTGAGGAGCTCTGCAAGTGTCGAGACCTGTGTGATAAGCAGGCGTCTGAGATGGTGTTGATGCAAACAGCTCTTCGTGAGGCAGTCGAACAGGCGTCAACTGCTCGACAGGAACTGGAAGCCTATAGACACGAGAAGGTTTGCGTAGCGTCAGATCTGGAGGGTCGATTGTCTGCTTCTCGTGACGAGTGTTCTGCATTACGGGATGAAATGTGCCGGCTTGAGAAATCGATGGAAGAGCGTTGCAACACAGTGTTGGCGATAGCCAATCGAGACTGGGAGTCGCGCGTAAACGAAATTGTGAGTGAACGCGACACAGCCATGAAAGAGTTGTCGGAACTGCGTGGTAGATTGGATATGGCAGTATTGGGTGTGGGGTACC] [+] EMBL CD115500 [GAACTGATTTACATTACTGATGGCACGTTGGTGTTTGTGGTTGACCATATAAGGGGCCTGCGTTCCGACTATGGAGATTGGTGTAGAGAGCACGAAGAACGAGTGCATGATTGTTTAGATGCTGTGGCAACAGGGTTGTCCCATGGTGTGGTTGAACACGTGGACCGTGAGTGTGAAACGATGACATGTCCAGAACACTTGGAGTCTACTGTTATGCTTGATAGCATTGTGCCACTACAGGAGTCTAATGAAGTTACGTCGATGCAGAGAGGAAAAGATTGGGATTCGGTAAATGAGATGAGCAGACTGTGTGACACCAATCGTGAGCTGTCTGAGGAGCTCTGCAAGTGTCGAGACCTGTGTGATAAGCAGGCGTCTGAGATGGTGTTGATGCAAACAGCTCTTCGTGAGGCAGTCGAACAGGCGTCAACTGCTCGACAGGAACTGGAAGCCTATAGACACGAGAAGGTTTGCGTAGCG ] [-] EMBL CD068811 [ actgcCCACTACAGGAGTCTAATGAAGTTACGTCGATGCAGAGAGGAAAAGATTGGGATTCGGTAAATGAGATGAGCAGACTGTGTGACACCAATCGTGAGCTGTCTGAGGAGCTCTGCAAGTGTCGAGACCTGTGTGATAAGCAGGTGTCTGAGATGGTGTTGATGCAAATAGCTCTTCGTGAGGCAGTCGAACAGGCGTCAACTGCTCGACAGGAACTGGAAGCCTATAGACACGAGAAGGTTTGCGTAGTGTCAGATCTGGAGGGTCGATTGTCTGCTTCTCGTGACGAGTGTTCTGCATTACGGGATGAAATGTGCCGGCTTGAGAAATCGATGGAAGAGCGTTGCAACACAGTGTTGGCGATAGCCAATCGAGACTGGGAGTCGCGCGTAAACGAAATTGTGAGTGAACGCGACACAGCCATGAAAGAGTTGTCGGAACTGCGTGGTAGATTGGATATGGCAGTATTGGGTGTGGGGTACC] consensusID : consensus_4757#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 520 fasta sequence [ATCATGCACTCGTTCTTCGTGCTCTCTACACCAATCTCCATAGTCGGAACGCAGGCCCCTTATATGGTCAACCACAAACACCAACAGTGCTTTCGTCTTGTTATGAACAGATAGTGAAGCTGTCTAAATCGGTTGAGGAGAGTGATGCTTCGTTGATGGATGTTCGGCGTTTGTTGACTGTGAAGGAGAGTGAAGTTGCGGATCTGAGAGAAGAGAAGCGTCATTTGCGAGACGAAGTGAATGAGTTGAGGGAGACTGTGGAGGCAGAACGACGTGATTTGGACATTATGCGTGCCAATGTGGATGTGTTGGAGAGGAAGGAAGAGGTGTCGGCGATGTACGTGGAGAGTCGTGGACCGAACACTGCTGCTGTGGAGGAGGAGTGTGTGCAGACGGAGATTGAGGACGACGTTTATGACCTAGTGTCGTCTCTGCAGGTCGAGGTTGCCCATCTGCGTGAGGAAAATGGCGCGACGTTGACGGCTCTGGAGCGTTCACAGCTTGAGTTGATGATGAAACA] [+] EMBL CD150387 [ATCATGCACTCGTTCTTCGTGCTCTCTACACCAATCTCCATAGTCGGAACGCAGGCCCCTTATATGGTCAACCACAAACACCAACAGTGCTTTCGTCTTGTTATGAACAGATAGTGAAGCTGTCTAAATCGGTTGAGGAGAGTGATGCTTCGTTGATGGATGTTCGGCGTTTGTTGACTGTGAAGGAGAGTGAAGTTGCGGATCTGAGAGAAGAGAAGCGTCATTTGCGAGACGAAGTGAATGAGTTGAGGGAGACTGTGGAGGCAGAACGACGTGATTTGGACATTATGCGTGCCAATGTGGATGTGTTGGAGAGGAAGGAAGAGGTGTCGGCGATGTACGTGGAGAGTCGTGGACCGAACACTGCTGCTGTGGAGGAGGAGTGTGTGCAGACGGAGATTGAGGACGACGTTTATGACCTAGTGTCGTCTCTGCAGGTCGAGGTTGCCCATCTGCGTGAGGAAAATGGCGCGACGTTGACGGCTCTGGAGCGTTCACAGCTTGAGTTGATGATGAAACA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4757#0 GAACTGATTTACATTACTGATGGCACGTTGGTGTTTGTGGTTGACCATATAAGGGGCCTG 60 consensus_4757#1 -------------------------------------------ATCATGCACTCGTTCTT 17 * *** * * ** consensus_4757#0 CGTTCCGACTATGGAGATTGGTGTAGAGAGCACGAAGAACGAGTGCATGATTGTTTAGAT 120 consensus_4757#1 CGTGCTCTCTACACCAATCTCCATAGTCGGAACGCAGGCCCCTTATATGGTCAACCACAA 77 *** * *** ** *** * *** ** * * *** * * * consensus_4757#0 GCTGTGGCAACAGGGTTGTC-CCATGGTGTGGTTGAACACGTGGACCGTGAGTGTGAAAC 179 consensus_4757#1 AC---ACCAACAGTGCTTTCGTCTTGTTATGAACAGATA-GTGAAGC---TGTCTAAATC 130 * ****** * * ** * ** * ** * * *** * * ** * ** * consensus_4757#0 GATGACATGTCCAGAACACTTGGAGTCTACTGTTATGCTTGATAGCATTGTGCCACTACA 239 consensus_4757#1 G-------GTTGAGGAGAGTGATGCTTCGTTG--ATGGATGTTCGGCGTTTGTTGACTGT 181 * ** ** * * * * ** *** ** * * * ** consensus_4757#0 GGAGTCTAATGAAGTTACGTCGATGCAGAGAGGAAAAGATTGGGATTCGGTAAATGAGAT 299 consensus_4757#1 GAAGGAGAGTGAAGTTGCG--GAT-CTGAGAGAAGAGAAGCGTCATTTGCGAGACGAAGT 238 * ** * ******* ** *** * ***** * * * * *** * * * ** * consensus_4757#0 GAGCAGACTGTGTGACACCAATCGTGAGCTGTCTGAGGAGCTCTGCAAGTGTCGAG-ACC 358 consensus_4757#1 GAATGAGTTGAGGGAGACTG--TGGAGGCAGAACGACGTGATTTGGACATTATGCGTGCC 296 ** ** * ** ** * ** * ** * * * ** * * * * ** consensus_4757#0 TGTGTG-ATAAGCAGGCGTCTGAGATGGTGTTGATGCAAACAGCTCTTCGTGAGGCAGTC 417 consensus_4757#1 AATGTGGATGTGTTGGAGAGGAAGGAAGAGGTGTCGGCGAT-GTACGTGGAGAGTC-GTG 354 **** ** * ** * ** * * ** * * * * * * *** * ** consensus_4757#0 GAACAGGCGTCAACTGCTCGACAGGAACTGGAAGCCTATAGACACGAGAAGGTTTGCGTA 477 consensus_4757#1 GACCGAACA-CTGCTGCTGTGGAGGAG--GAGTGTGTGCAGACG-GAGATTGAGGACGAC 410 ** * * * ***** **** * * * **** **** * ** consensus_4757#0 GCGTCAGATCTGGAGGGTCGATTGTCTGCTTCTCGTGACGAGTGTTCTGCATTACGGGAT 537 consensus_4757#1 GTTTATGACCT--AGTGTCG--TCTCTGCAGGTCGAGGTTGCCCATCTGCGT---GAGGA 463 * * ** ** ** **** * ***** *** * ***** * * * consensus_4757#0 GAAATGTGCCGGCTTGAGAAATCGATGGAAGAGCGTTGCAACACAGTGTTGGCGATAGCC 597 consensus_4757#1 AAATGGCGCGACGTTGACGGCTCTG-----GAGCGTTCACAGCTTGAGTTGATGATGAAA 518 ** * ** **** ** ******* * * **** *** consensus_4757#0 AATCGAGACTGGGAGTCGCGCGTAAACGAAATTGTGAGTGAACGCGACACAGCCATGAAA 657 consensus_4757#1 CA---------------------------------------------------------- 520 * consensus_4757#0 GAGTTGTCGGAACTGCGTGGTAGATTGGATATGGCAGTATTGGGTGTGGGGTACC 712 consensus_4757#1 ------------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||