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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4765#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 679 fasta sequence
[TTATCTCAAACTGCTAGCTATATAGCTGGGAGAATATGGCTTCTTAATCAACAGAACTTGATTATTGCCAAGTCTCTCATTTCGCCTAAACTCTCAGAGGGCTTGTGGTTCGTATCAGGGAGTAGTGTTAGTGATCAAGGAGACAGCTCTAACTTGGGTACTTACAACAAAACTGGTAATGATAAAGGAACGTCTCAGTTTAAAAGTCAGAAAAATGCAGCTGAATCTATTATCAGAAAACCACTTCTTCTTCAGAACTACCCGATCCCTTCTCCGCCAACCCTAGATCAAAAAGCGTTCTCCAAAGAAAGACGCGTGCCATCATCACGTATAGGACGAGTAGCTGGTTTTGGAAATTTGGCATTAAGTCTTAGTGTTGGAGCAGCTTCTGAGTGGGCTAAACAGAAAGTTGGATATCCTGTCTCTGGCGCTTCAGCTCCACCTTCAAATGTGTTTTTATCTGAGGCTAATCTTGAAAAGGTCGTAGACACGTTGTGTCGTATGCGCGGAGCTGCTCTTAAGCTTGGACAAATGTTAAGTATCCAAGATGAGAGTTTTGTTAGTCCCCAGGTCCAAAGAATATTTGAACGTGTAAGACAGGCGGCAGATTTCATGCCAGCTAAACAAATGAAAAAAGTCCTAACATCAGAACTAGGCGAAGATTGGACTGAACATGGTG]
[+] EMBL CD131394 [TTATCTCAAACTGCTAGCTATATAGCTGGGAGAATATGGCTTCTTAATCAACAGAACTTGATTATTGCCAAGTCTCTCATTTCGCCTAAACTCTCAGAGGGCTTGTGGTTCGTATCAGGGAGTAGTGTTAGTGATCAAGGAGACAGCTCTAACTTGGGTACTTACAACAAAACTGGTAATGATAAAGGAACGTCTCAGTTTAAAAGTCAGAAAAATGCAGCTGAATCTATTATCAGAAAACCACTTCTTCTTCAGAACTACCCGATCCCTTCTCCGCCAACCCTAGATCAAAA ]
[+] EMBL BF936582 [ AGCTGGGAGAATATGGCTTCTTAATCAACAGAACTTGATTATTGCCAAGTCTCTCATTTCGCCTAAACTCTCAGAGGGCTTGTGGTTCGTATCAGGGAGTAGTGTTAGTGATCAAGGAGACAGCTCTAACTTGGGTACTTACAACAAAACTGGTAATGATAAAGGAACGTCTCAGTTTAAAAGTCAGAAAAATGCAGCTGAATCTATTATCAGAAAACCACTTCTTCTTCAGAACTACCCGATCCCTTCTCCGCCAACCCTAGATCAAAAAGCGTTCTCCAAAGAAAGACGCGTGCCATCATCACGTATAGGACGAGTAGCTGGTTTTGGAAATTTGGCATTAAGTCTTAGTGTTGGAGCAGCTTCTGAGTGGGCTAAACAGAAAGTTGGATATCCTGTCTCTGGCGCTTCAGCTCCACCTTCAAATGTGTTTTTATCTGAGGCTAATCTTGAAAAGGTCGTAGACACGTTGTGTCGTATGCGCGGAGCTGCTCTTAAGCTTGGACAAATGTTAAGTATCCAAGATGAGAGTTTTGTTAGTCCCCAGGTCCAAAGAATATTTGAACGTGTAAGACAGGCGGCAGATTTCATGCCAGCTAAACAAATGAAAAAAGTCCTAACATCAGAACTAGGCGAAGATTGGACTGAACATGGTG]
consensusID : consensus_4765#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 450 fasta sequence
[CTTAAATGGTGTTTTGCGTGGAATTGGGGTGGTATTGAATGCTACATTGAAGGATCAGTCTGTCAAAGCCTCGTGGGCATGGTCAAAATCTGATTTTCGCGACGTTCTGGTTAATGTATCAAAGTCTCTATGCAGTAAAATAAGTGATCAGAATTTATCTCAAACTGCCAGCTATATAGCTGGGAGAATATGGCTTCTTAATCAACAGAACTTGATTATTGCCAAGTCTCTCATTTCGCCTAAACTCTCAGAGGGCTTGTGGTTCGTATCAGGGAGTAGTGTTAGTGATCAAGGAGACAGCTCTAACTTGGGTACTTACAACAAAACTGGTAATGATAAAGGAACGTCTCAGTTTAAAAGTCAGAAAAATGCAGCTGAATCTATTATCAGAAATAGCTACCCAGCCAAATTCATTGAAAAAAAGCGTGACACCGAAATTACAAACTTAAA]
[+] EMBL CD184853 [CTTAAATGGTGTTTTGCGTGGAATTGGGGTGGTATTGAATGCTACATTGAAGGATCAGTCTGTCAAAGCCTCGTGGGCATGGTCAAAATCTGATTTTCGCGACGTTCTGGTTAATGTATCAAAGTCTCTATGCAGTAAAATAAGTGATCAGAATTTATCTCAAACTGCCAGCTATATAGCTGGGAGAATATGGCTTCTTAATCAACAGAACTTGATTATTGCCAAGTCTCTCATTTCGCCTAAACTCTCAGAGGGCTTGTGGTTCGTATCAGGGAGTAGTGTTAGTGATCAAGGAGACAGCTCTAACTTGGGTACTTACAACAAAACTGGTAATGATAAAGGAACGTCTCAGTTTAAAAGTCAGAAAAATGCAGCTGAATCTATTATCAGAAATAGCTACCCAGCCAAATTCATTGAAAAAAAGCGTGACACCGAAATTACAAACTTAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4765#0 ------------------------------------------------------------
consensus_4765#1 CTTAAATGGTGTTTTGCGTGGAATTGGGGTGGTATTGAATGCTACATTGAAGGATCAGTC 60
consensus_4765#0 ------------------------------------------------------------
consensus_4765#1 TGTCAAAGCCTCGTGGGCATGGTCAAAATCTGATTTTCGCGACGTTCTGGTTAATGTATC 120
consensus_4765#0 ----------------------------------TTATCTCAAACTGCTAGCTATATAGC 26
consensus_4765#1 AAAGTCTCTATGCAGTAAAATAAGTGATCAGAATTTATCTCAAACTGCCAGCTATATAGC 180
************** ***********
consensus_4765#0 TGGGAGAATATGGCTTCTTAATCAACAGAACTTGATTATTGCCAAGTCTCTCATTTCGCC 86
consensus_4765#1 TGGGAGAATATGGCTTCTTAATCAACAGAACTTGATTATTGCCAAGTCTCTCATTTCGCC 240
************************************************************
consensus_4765#0 TAAACTCTCAGAGGGCTTGTGGTTCGTATCAGGGAGTAGTGTTAGTGATCAAGGAGACAG 146
consensus_4765#1 TAAACTCTCAGAGGGCTTGTGGTTCGTATCAGGGAGTAGTGTTAGTGATCAAGGAGACAG 300
************************************************************
consensus_4765#0 CTCTAACTTGGGTACTTACAACAAAACTGGTAATGATAAAGGAACGTCTCAGTTTAAAAG 206
consensus_4765#1 CTCTAACTTGGGTACTTACAACAAAACTGGTAATGATAAAGGAACGTCTCAGTTTAAAAG 360
************************************************************
consensus_4765#0 TCAGAAAAATGCAGCTGAATCTATTATCAGAAAACCACTTCTTCTTCAGAACTACCCGAT 266
consensus_4765#1 TCAGAAAAATGCAGCTGAATCTATTATCAGAAA--TAGCTACCCAGCCAAATTCATTGAA 418
********************************* * * * * ** * **
consensus_4765#0 CCCTTCTCCGCCAACCCTAGATCAAAAAGCGTTCTCCAAAGAAAGACGCGTGCCATCATC 326
consensus_4765#1 AAAAAGCGTGACA--CCGAAATTACAAA-----CTTAAA--------------------- 450
* ** ** * ** * *** ** **
consensus_4765#0 ACGTATAGGACGAGTAGCTGGTTTTGGAAATTTGGCATTAAGTCTTAGTGTTGGAGCAGC 386
consensus_4765#1 ------------------------------------------------------------
consensus_4765#0 TTCTGAGTGGGCTAAACAGAAAGTTGGATATCCTGTCTCTGGCGCTTCAGCTCCACCTTC 446
consensus_4765#1 ------------------------------------------------------------
consensus_4765#0 AAATGTGTTTTTATCTGAGGCTAATCTTGAAAAGGTCGTAGACACGTTGTGTCGTATGCG 506
consensus_4765#1 ------------------------------------------------------------
consensus_4765#0 CGGAGCTGCTCTTAAGCTTGGACAAATGTTAAGTATCCAAGATGAGAGTTTTGTTAGTCC 566
consensus_4765#1 ------------------------------------------------------------
consensus_4765#0 CCAGGTCCAAAGAATATTTGAACGTGTAAGACAGGCGGCAGATTTCATGCCAGCTAAACA 626
consensus_4765#1 ------------------------------------------------------------
consensus_4765#0 AATGAAAAAAGTCCTAACATCAGAACTAGGCGAAGATTGGACTGAACATGGTG 679
consensus_4765#1 -----------------------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||