cluster # 477

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Schistosoma mansoni
cluster # 477 cluster # 477 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_477#0 length = 270 sequences # 1

consensus_477#1 length = 199 sequences # 1

consensusID : consensus_477#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 270
fasta sequence

                              [CCAGTAAGGTAGCATTCACTTTTCGAAAGTTATTACAAAGTAGGTCTACTCACTGCCTTATAAGGATAAACAACGACGTGACTTCGACATAAATCATGGAGAGTTTGCAATAATATTTCAGTCAGACAAATGCATTGAATCCAGTCTTTTCGCTTTATCGAATAGATACACTCATAAACATCATTCAGTAGTATTATATCATGGTGTTGAATCTGATATATTCGTCATTTTTAAAGTAAGACAATCATAAATATGTGAGTAGATTGTCCT]

[+] EMBL AI764906             [CCAGTAAGGTAGCATTCACTTTTCGAAAGTTATTACAAAGTAGGTCTACTCACTGCCTTATAAGGATAAACAACGACGTGACTTCGACATAAATCATGGAGAGTTTGCAATAATATTTCAGTCAGACAAATGCATTGAATCCAGTCTTTTCGCTTTATCGAATAGATACACTCATAAACATCATTCAGTAGTATTATATCATGGTGTTGAATCTGATATATTCGTCATTTTTAAAGTAAGACAATCATAAATATGTGAGTAGATTGTCCT]




>consensus_477#0
CCAGTAAGGTAGCATTCACTTTTCGAAAGTTATTACAAAGTAGGTCTACTCACTGCCTTA
TAAGGATAAACAACGACGTGACTTCGACATAAATCATGGAGAGTTTGCAATAATATTTCA
GTCAGACAAATGCATTGAATCCAGTCTTTTCGCTTTATCGAATAGATACACTCATAAACA
TCATTCAGTAGTATTATATCATGGTGTTGAATCTGATATATTCGTCATTTTTAAAGTAAG
ACAATCATAAATATGTGAGTAGATTGTCCT

consensusID : consensus_477#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 199
fasta sequence

                              [CAATCCAGTCTTTTTCGCTTTATTCGAATAGATATCACCTGCATAGAACATCATTCAGTACGTATTATATACATGGTGTTGAATCTGATATATTCGTCATTTTTAAAGTNGTGACAATCATAAATATGTGACTGNATTGTCCTTCATGACATGCCTAATTCAAATTACACATAGACAACCTGTNNGTCCATCTGCAACA]

[-] EMBL AI764806             [CAATCCAGTCTTTTTCGCTTTATTCGAATAGATATCACCTGCATAGAACATCATTCAGTACGTATTATATACATGGTGTTGAATCTGATATATTCGTCATTTTTAAAGTNGTGACAATCATAAATATGTGACTGNATTGTCCTTCATGACATGCCTAATTCAAATTACACATAGACAACCTGTNNGTCCATCTGCAACA]




>consensus_477#1
CAATCCAGTCTTTTTCGCTTTATTCGAATAGATATCACCTGCATAGAACATCATTCAGTA
CGTATTATATACATGGTGTTGAATCTGATATATTCGTCATTTTTAAAGTNGTGACAATCA
TAAATATGTGACTGNATTGTCCTTCATGACATGCCTAATTCAAATTACACATAGACAACC
TGTNNGTCCATCTGCAACA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_477#0      CCAGTAAGGTAGCATTCACTTTTCGAAAGTTATTACAAAGTAGGTCTACTCACTGCCTTA 60
consensus_477#1      ------------------------------------------------------------
                                                                                 

consensus_477#0      TAAGGATAAACAACGACGTGACTTCGACATAAATCATGGAGAGTTTGCAATAATATTTCA 120
consensus_477#1      ------------------------------------------------------------
                                                                                 

consensus_477#0      GTCAGACAAATGCATTGAATCCAGTCTTTT-CGCTTTAT-CGAATAGATA-CACTCATA- 176
consensus_477#1      ----------------CAATCCAGTCTTTTTCGCTTTATTCGAATAGATATCACCTGCAT 44
                                      ************* ******** ********** ***    * 

consensus_477#0      --AACATCATTCAGTA-GTATTATAT-CATGGTGTTGAATCTGATATATTCGTCATTTTT 232
consensus_477#1      AGAACATCATTCAGTACGTATTATATACATGGTGTTGAATCTGATATATTCGTCATTTTT 104
                       ************** ********* *********************************

consensus_477#0      AAAGTAA-GACAATCATAAATATGTGAGTAGATTGTCCT--------------------- 270
consensus_477#1      AAAGTNGTGACAATCATAAATATGTGACTGNATTGTCCTTCATGACATGCCTAATTCAAA 164
                     *****   ******************* *  ********                     

consensus_477#0      -----------------------------------
consensus_477#1      TTACACATAGACAACCTGTNNGTCCATCTGCAACA 199