These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4771#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 546 fasta sequence [CTACTGGATGGCTTTCCAGTTGGTGGCTCTTTTTTCTGTTTCACATGTACCCTACGGCAGTTTTCTAATGCCTATTTAATTAAATTACCTATTTATTCTTTAATATTCTTTGTCTTTTTTGTCTACTTATAAACTCACTTTTTTTTAATCCGCCCTCATTCTACTTTATTATAGCATATACACACTTTTGTATAGACACATACATAGGCGTAAAAAAGCTCCTTTTTTACTTCACATATGCTTTTTCACGTACTAAATGATTTTTTGTGTTATTCTATCTGCGTGTGAATGTGTGCTATATGGATTGTTTGTATTTCATCCATATTTTTTCTGTAGGACCTATCTGCGAGTTTTATGTACGGTCTGATCGTACTATGTGCAACGAACGATGGTGGTATCTAACGAAGTCCACAACTCATGTGTACGCATCTATTATATACTATGCACCTGGACGCGTCTGCATCCAAATTGATGGTCGCACAAGGACTGGAACCCACTACTGTTCCATACAGATGACATCCCGTTATACACTTATCTACTGAGGGC] [+] EMBL CD091914 [CTACTGGATGGCTTTCCAGTTGGTGGCTCTTTTTTCTGTTTCACATGTACCCTACGGCAGTTTTCTAATGCCTATTTAATTAAATTACCTATTTATTCTTTAATATTCTTTGTCTTTTTTGTCTACTTATAAACTCACTTTTTTTTAATCCGCCCTCATTCTACTTTATTATAGCATATACACACTTTTGTATAGACACATACATAGGCGTAAAAAAGCTCCTTTTTTACTTCACATATGCTTTTTCACGTACTAAATGATTTTTTGTGTTATTCTATCTGCGTGTGAATGTGTGCTATATGGATTGTTTGTATTTCATCCATATTTTTTCTGTAGGACCTATCTGCGAGTTTTATGTACGGTCTGATCGTACTATGTGCAACGAACGATGGTGGTATCTAACGAAGTCCACAACTCATGTGTACGCATCTATTATATACTATGCACCTGGACGCGTCTGCATCCAAATTGATGGTCGCACAAGGACTGGAACCCACTACTGTTCCATACAGATGACATCCCGTTATACACTTATCTACTGAGGGC] consensusID : consensus_4771#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 543 fasta sequence [CTAGTGGATGGCTTTCCAGTTGTTGGTTCTTTTTTCTGTTTCACATCTACCCTACGGCGTTTTCTAATGTCTATTTAATTTAATTACCTATTTATTCTTTAATTTTCTTTGTCTTTTTTGTCTACTTATAAACTCACTTTTTTTTAATCCGCCCTCATTCTACTTTGTTCTCGCATATACACACTTTTGTATAGACACATACATAGGCGTAAAAAAGCTCCTTTTTTAGTTCACATATGCTTTTTCACGTACTAAATGATTTTTTGTGTTATTCTATCTGTGTGTGTATGTGTGCGAGATGGATTGTTTGTATTTCATCCATATTTTTTCTGTAGTACCTATCTGCGAGTTTTATGTACGGTCTGATCGTACTATGTGCAGTGAGGGATGGTGGTAGTAGTGAAGTCCAAAACTCATGTTTCGTTCTATTAGATACTAGTCAACTGGACGTGTCTGCATCGTAGTTGATGTTTGTCCAAGGACTCGAACCCACTACTGTTCGATTCAAATGACATCGCGTTATACACTTAGCTACTGAGTCCA] [+] EMBL CD091881 [CTAGTGGATGGCTTTCCAGTTGTTGGTTCTTTTTTCTGTTTCACATCTACCCTACGGCGTTTTCTAATGTCTATTTAATTTAATTACCTATTTATTCTTTAATTTTCTTTGTCTTTTTTGTCTACTTATAAACTCACTTTTTTTTAATCCGCCCTCATTCTACTTTGTTCTCGCATATACACACTTTTGTATAGACACATACATAGGCGTAAAAAAGCTCCTTTTTTAGTTCACATATGCTTTTTCACGTACTAAATGATTTTTTGTGTTATTCTATCTGTGTGTGTATGTGTGCGAGATGGATTGTTTGTATTTCATCCATATTTTTTCTGTAGTACCTATCTGCGAGTTTTATGTACGGTCTGATCGTACTATGTGCAGTGAGGGATGGTGGTAGTAGTGAAGTCCAAAACTCATGTTTCGTTCTATTAGATACTAGTCAACTGGACGTGTCTGCATCGTAGTTGATGTTTGTCCAAGGACTCGAACCCACTACTGTTCGATTCAAATGACATCGCGTTATACACTTAGCTACTGAGTCC ] [-] EMBL CD091845 [ TAGTGGATGGCTTTCCAGTTGTTGGTTCTTTTTTCTGTTTCACATCTACCCTACGGCGTTTTCTAATGTCTATTTAATTTAATTACCTATTTATTCTTTAATTTTCTTTGTCTTTTTTGTCTACTTATAAACTCACTTTTTTTTAATCCGCCCTCATTCTACTTTATTCTCGCATATACACACTTTTGTATAGACACATACATAGGCGTAAAAAAGCTCCTTTTTTAGTTCACATATGCTTTTTCACGTACTAAATGATTTTTTGTGTTATTCTATCTGTGTGTGTATGTGTGCGAGATGGATTGTTTGTATTTCATCCATATTTTTTCTGTAGTACCTATCTGCGAGTTTTATGTACGGTCTGATCGTACTATGTGCAGTGAAGGATGGTGGTAGTAGTGAAGTCCAAAACTCATGTTTCGTTCTATTAGATACTAGTCAACTGGACGTGTCTGCATCGTAGTTGATGTTTGTCCAAGGACTCGAACCCACTACTGTTCGATTCAAATGACATCGCGTTATACACTTAGCTACTGAGTCCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4771#0 CTACTGGATGGCTTTCCAGTTGGTGGCTCTTTTTTCTGTTTCACATGTACCCTACGGCAG 60 consensus_4771#1 CTAGTGGATGGCTTTCCAGTTGTTGGTTCTTTTTTCTGTTTCACATCTACCCTACGGC-G 59 *** ****************** *** ******************* *********** * consensus_4771#0 TTTTCTAATGCCTATTTAATTAAATTACCTATTTATTCTTTAATATTCTTTGTCTTTTTT 120 consensus_4771#1 TTTTCTAATGTCTATTTAATTTAATTACCTATTTATTCTTTAATTTTCTTTGTCTTTTTT 119 ********** ********** ********************** *************** consensus_4771#0 GTCTACTTATAAACTCACTTTTTTTTAATCCGCCCTCATTCTACTTTATTATAGCATATA 180 consensus_4771#1 GTCTACTTATAAACTCACTTTTTTTTAATCCGCCCTCATTCTACTTTGTTCTCGCATATA 179 *********************************************** ** * ******* consensus_4771#0 CACACTTTTGTATAGACACATACATAGGCGTAAAAAAGCTCCTTTTTTACTTCACATATG 240 consensus_4771#1 CACACTTTTGTATAGACACATACATAGGCGTAAAAAAGCTCCTTTTTTAGTTCACATATG 239 ************************************************* ********** consensus_4771#0 CTTTTTCACGTACTAAATGATTTTTTGTGTTATTCTATCTGCGTGTGAATGTGTGCTATA 300 consensus_4771#1 CTTTTTCACGTACTAAATGATTTTTTGTGTTATTCTATCTGTGTGTGTATGTGTGCGAGA 299 ***************************************** ***** ******** * * consensus_4771#0 TGGATTGTTTGTATTTCATCCATATTTTTTCTGTAGGACCTATCTGCGAGTTTTATGTAC 360 consensus_4771#1 TGGATTGTTTGTATTTCATCCATATTTTTTCTGTAGTACCTATCTGCGAGTTTTATGTAC 359 ************************************ *********************** consensus_4771#0 GGTCTGATCGTACTATGTGCAACGAACGATGGTGGTATCTAACGAAGTCCACAACTCATG 420 consensus_4771#1 GGTCTGATCGTACTATGTGCAGTGAGGGATGGTGGTAG-TAGTGAAGTCCAAAACTCATG 418 ********************* ** ********** ** ******** ******** consensus_4771#0 TGTACGCATCTATTATATACTATGCACCTGGACGCGTCTGCATCCAAATTGATGGTCGCA 480 consensus_4771#1 TTT-CGT-TCTATTAGATACTAGTCAACTGGACGTGTCTGCATCGTAGTTGATGTTTGTC 476 * * ** ******* ****** ** ******* ********* * ****** * * consensus_4771#0 CAAGGACTGGAACCCACTACTGTTCCATACAGATGACATCCCGTTATACACTTATCTACT 540 consensus_4771#1 CAAGGACTCGAACCCACTACTGTTCGATTCAAATGACATCGCGTTATACACTTAGCTACT 536 ******** **************** ** ** ******** ************* ***** consensus_4771#0 GAGGGC- 546 consensus_4771#1 GAGTCCA 543 *** * |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||