These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_478#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 626 fasta sequence [TTACATTAATGCAACGTAATATACGTAAATATTTAGTATTACGTAATTGGCCATGGTGGAGATTATATACAAAAGTGAAACCAATGTTAAATATAGCACGTCAAGAAGAAGAAATGAAAAAAGCCGCTGAAGAATTAGCCAAATTAAAAGAAGAATATGAAAAATTAGAAAAATTAAAAAAAGAATTAGAAGAACAAAATGTCACTGTATTACAACAAAAAAATGATTTATTTTTACAATTACAAACTGAACAAGATAGTTTAGCTGATGCTGAAGAGAAAATATCCAAGCTTGTGCTACAACGTGGTGATATGGAACAACGTATTAAAGAATTAGAAGAACGTTTAGCTGATGAAGAAGATCAAGAGCAAACGATATGGAAACTGTTGCGTTTAAACAAATCCACAACTGTGGATAACCGTTACAGTAATTAAAGTACAGTGATTATAAAGACAAATACAATGATAAGTACAATAAACATTATAAATATATGTGAACGTTTCCGAATGTTACAGTACAACTTGCGTTACAATGTAAATGTGAAAATTGTTAAGGATACAACTGCTTATTGAATATAAATAAGTAGTTTACAACAATAAACAAAGGAGTGGAAGGAGAGTGAGTCG] [+] EMBL CD064553 [TTACATTAATGCAACGTAATATACGTAAATATTTAGTATTACGTAATTGGCCATGGTGGAGATTATATACAAAAGTGAAACCAATGTTAAATATAGCACGTCAAGAAGAAGAAATGAAAAAAGCCGCTGAAGAATTAGCCAAATTAAAAGAAGAATATGAAAAATTAGAAAAATTAAAAAAAGAATTAGAAGAACAAAATGTCACTGTATTACAACAAAAAAATGATTTATTTTTACAATTACAAACTGAACAAGATAGTTTAGCTGATGCTGAAGAGAAAATATCCAAGCTTGTGCTACAACGTGGTGATATGGAACAACGTATTAAAGAATTAGAAGAACGTTTAGCTGATGAAGAAGATCAAGAGCAAACGATATGGAAACTGTTGCGTTTAAACAAATCCACAACTGTGGATAACCGTTACAGTAATTAAAGTACAGTGATTATAAAGACAAATACAATGATAAGTACAATAAACATTATAAATATATGTGAACGTTTCCGAATGTTACAGTACAACTTGCGTTACAATGTAAATGTGAAAATTGTTAAGGATACAACTGCTTATTGAATATAAATAAGTAGTTTACAACAATAAACAAAGGAGTGGAAGGAGAGTGAGTCG] consensusID : consensus_478#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 410 fasta sequence [CAATTACAAGTCGCGCAGGAATATTAACCTGCTTGCCATCGATTACGCCTTTCGGCCTCACCTTAAGGGTCGACTCACCCTGCCCCGATTAACGTTGGACAGGAACCCTTGGTCTTCCGGCGAGGAGGCTTTTCACCCCCTTTATCGGTACTTACGTGAGCATTCCCACTTCTGATATATCCAGCATACCTCTCGATACACCTTCGCAAACTTACATAACGCTCCCCTACCACTCACACATAAGAGTGAATCCGCGGCTTCCGTGCCTGTGTTGAGCCCCGTTACATCTTCCGCGCACGCCGACTCGACTAGTGAGCTATAACGCTGTCTCTAAATGATGAGCTGCTTTAACCCAACATCCTACCTGTCTGAGCCTTACCACATGGTTGCCCACTTAACCCGAACTTTGG] [+] EMBL CD086932 [CAATTACAAGTCGCGCAGGAATATTAACCTGCTTGCCATCGATTACGCCTTTCGGCCTCACCTTAAGGGTCGACTCACCCTGCCCCGATTAACGTTGGACAGGAACCCTTGGTCTTCCGGCGAGGAGGCTTTTCACCCCCTTTATCGGTACTTACGTGAGCATTCCCACTTCTGATATATCCAGCATACCTCTCGATACACCTTCGCAAACTTACATAACGCTCCCCTACCACTCACACATAAGAGTGAATCCGCGGCTTCCGTGCCTGTGTTGAGCCCCGTTACATCTTCCGCGCACGCCGACTCGACTAGTGAGCTATAACGCTGTCTCTAAATGATGAGCTGCTTTAACCCAACATCCTACCTGTCTGAGCCTTACCACATGGTTGCCCACTTAACCCGAACTTTGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_478#0 TTACATTAATGCAACGTAATATACGTAAATATTTAGTATTACGTAATTGGCCATGGTGGA 60 consensus_478#1 ------------------------------------------------------------ consensus_478#0 GATTATATACAAAAGTGAAACCAATGTTAAATATAGCACGTCAAGAAGAAGAAATGAAAA 120 consensus_478#1 ---------------------------------------------------CAATTACAA 9 *** * ** consensus_478#0 AAGCCGCTGAAGAATTAGCCAAATTAAAAGAAGAATATGAAAAATTAGAAAAATTAAAAA 180 consensus_478#1 GTCGCGCAGGAATATTAACCTGCTTGCCATC-GATTACGC----CTTTCGGCCTCACCTT 64 *** * * **** ** ** * ** ** * * * * consensus_478#0 AAGAATTAGAAGAACAAAATGTCACTGTATTACAACAAAAAAATGATTTATTTTTACAAT 240 consensus_478#1 AAGGGTCGACTCACCCTGCCCCGATTAACGTTGGACAGGAACCC---TTGGTCTTCCGGC 121 *** * * * * * * *** ** ** * ** * consensus_478#0 TACAAACTGAACAAGATAGTTTAGCTGATGCTGAAGAGAAAATATCCAAGCTTGTGCTAC 300 consensus_478#1 GAGGAGGCTTTTCACCCCCTTTATC-GGTACTTACGTGAGCATTCCCA--CTTCTGATAT 178 * * * **** * * * ** * * ** ** *** *** ** ** consensus_478#0 AACGTGGTGATATGGAACAACGTATTAAAGAATTAGAAGAACGTTTAGCTGATGAAGAAG 360 consensus_478#1 ATCCAGCATACCTCTCGATACACCTTCGCAAACTTACATAACGCTCCCCTACCACTCACA 238 * * * * * ** ** ** * * **** * ** * consensus_478#0 ATCAAGAGCAAACGATATGGAAACTGTTGCGTTTAAACAAATCCACAACTGTGGATAACC 420 consensus_478#1 CATAAGAGTGAAT----CCGCGGCTTCCGTGCCTGTGTTGAGCC-CCGTTACATCTTCCG 293 ***** ** * ** * * * * ** * * * * consensus_478#0 GTTACAGTAATTAAAGTACAGTGATTATAAAGACAAATACAA-TGATAAGTACAATAAAC 479 consensus_478#1 CGCACGCCGACTCGACTAGTG-AGCTATAACGCTGTCTCTAAATGATGAGCTGCTTTAAC 352 ** * * * ** * ***** * * ** **** ** * *** consensus_478#0 ATTATAAATATATGTGAACGTTTCCGAATGTTACAGTACAACTTGCGTTACAATGTAAAT 539 consensus_478#1 ----CCAACATCCT---ACCTGTCTGAGCCTTACCACATGGTTGCCCACTTAACCCGAAC 405 ** ** ** * ** ** **** * * * ** ** consensus_478#0 GTGAAAATTGTTAAGGATACAACTGCTTATTGAATATAAATAAGTAGTTTACAACAATAA 599 consensus_478#1 TTTGG------------------------------------------------------- 410 * consensus_478#0 ACAAAGGAGTGGAAGGAGAGTGAGTCG 626 consensus_478#1 --------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||