cluster # 4788

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Schistosoma mansoni
cluster # 4788 cluster # 4788 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4788#0 length = 462 sequences # 1

consensus_4788#1 length = 402 sequences # 2

consensusID : consensus_4788#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 462
fasta sequence

                              [GGAATACAATTTACTGAATAAAAAACAACTCATTTACAAGCTGAGTAAACGAACAAATCCCCAAACTTGTGCGTTCATTAAAAACCCTGGGGAGCGAGGAAACAAAACAATTTTTCCATTGAAATCAAAAACAAATAAAAGTAAAAATTATTACCCAAAAAAAATTCCAACCAATTTAGCGGGGAAAAAGTAAAAATGAATAAAGGGGGGGAAACAGTATTTGTAAATAATTATATGGGTAAAAAGCAATTACTTATTATATACAATGAGTAGTAAATGCTAGGGAATTTTGGTTATTGGCGTCGGCGTCCACATCAATATCATCATAAAAATGTTGGGGCGCTAAACTGCTCATTTCGTCACAATCTATGCAAAACTAAAAACAGCTAATTTCTTTAAATGTTCCATAAATCCTTGAAGGGATACATCATCCGTTAGTACTGCACTACCGGAATCCTGACC]

[+] EMBL CD075836             [GGAATACAATTTACTGAATAAAAAACAACTCATTTACAAGCTGAGTAAACGAACAAATCCCCAAACTTGTGCGTTCATTAAAAACCCTGGGGAGCGAGGAAACAAAACAATTTTTCCATTGAAATCAAAAACAAATAAAAGTAAAAATTATTACCCAAAAAAAATTCCAACCAATTTAGCGGGGAAAAAGTAAAAATGAATAAAGGGGGGGAAACAGTATTTGTAAATAATTATATGGGTAAAAAGCAATTACTTATTATATACAATGAGTAGTAAATGCTAGGGAATTTTGGTTATTGGCGTCGGCGTCCACATCAATATCATCATAAAAATGTTGGGGCGCTAAACTGCTCATTTCGTCACAATCTATGCAAAACTAAAAACAGCTAATTTCTTTAAATGTTCCATAAATCCTTGAAGGGATACATCATCCGTTAGTACTGCACTACCGGAATCCTGACC]




>consensus_4788#0
GGAATACAATTTACTGAATAAAAAACAACTCATTTACAAGCTGAGTAAACGAACAAATCC
CCAAACTTGTGCGTTCATTAAAAACCCTGGGGAGCGAGGAAACAAAACAATTTTTCCATT
GAAATCAAAAACAAATAAAAGTAAAAATTATTACCCAAAAAAAATTCCAACCAATTTAGC
GGGGAAAAAGTAAAAATGAATAAAGGGGGGGAAACAGTATTTGTAAATAATTATATGGGT
AAAAAGCAATTACTTATTATATACAATGAGTAGTAAATGCTAGGGAATTTTGGTTATTGG
CGTCGGCGTCCACATCAATATCATCATAAAAATGTTGGGGCGCTAAACTGCTCATTTCGT
CACAATCTATGCAAAACTAAAAACAGCTAATTTCTTTAAATGTTCCATAAATCCTTGAAG
GGATACATCATCCGTTAGTACTGCACTACCGGAATCCTGACC

consensusID : consensus_4788#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 402
fasta sequence

                              [TTTTCCATTGAAATCAAGAACAAATAAAAGTAGAAATTATTACACGAAAAAAATTACAACCAAATTAGCGGGGAAAAAGTAAAAATGAATAAAAGGTGGGAAACAGTATTTGTAGATAATTATATGTGTAGAAAGCAATTACTTATTATATACGATGAGTAGTAGATGCTAGTGAATTTTGGTTATTGTCGTCGGCGTCCACATCAATATCATCATAAAGATGTTGTGGCGCTAGACTGCTCATTTCGTCACAATCTATGCAGAACTAGAGACAGCTAATTTCTTTAAATGTTCCATAAATCCTTGAAGTGATACATCATCCGTTAGTACTGCACTACCGGAATCATCTACTTGAGACTGACCAAATGAATACATTGTATGATGTGTTAATGATGGATTAAC]

[+] EMBL CD149390             [TTTTCCATTGAAATCAAGAACAAATAAAAGTAGAAATTATTACACGAAAAAAATTACAACCAAATTAGCGGGGAAAAAGTAAAAATGAATAAAAGGTGGGAAACAGTATTTGTAGATAATTATATGTGTAGAAAGCAATTACTTATTATATACGATGAGTAGTAGATGCTAGTGAATTTTGGTTATTGTCGTCGGCGTCCACATCAATATCATCATAAAGATGTTGTGGCGCTAGACTGCTCATTTCGTCACAATCTATGCAGAACTAGAGACAGCTAATTTCTTTAAATGTTCCATAAATCCTTGAAGTGATACATCATCCGTTAGTACTGCACTACCGGAATCATCTACTTGAGACTGACCAAATGAATACATTGTATGATGTGTTAATGATGGATTAAC]
[+] EMBL CD149322             [TTTTCCATTGAAATCAAGAACAAATAAAAGTGGAAATTATTACACGAAAAAAATTACAACCAAATTATCGGGGAAAAAGTAAAAATGAATAAAAGGTGGGAAACAGTATTTGTAGATAATTATATGTGTAGAAAGCAATTACTTATTATATACGATGAGTATTAAATGCTAGTGAATTTTGGTTATTGTCGTCGGCGTCCACATCAATATCATCATAAAGATGTTGTGGCGCTAAACTGCTCATTTCGTCACAATCTATGCAGAACTAGAGACAGCTAATTTCTTTAAATGTTCCATAAATCCTTGAAGTGATACATCATCCGTTAGTACTGCACTACCGGAATCATCTACTTGAGACTGACCAAATGAATACATTGTATGATGTGCTAATGATGGAT    ]




>consensus_4788#1
TTTTCCATTGAAATCAAGAACAAATAAAAGTAGAAATTATTACACGAAAAAAATTACAAC
CAAATTAGCGGGGAAAAAGTAAAAATGAATAAAAGGTGGGAAACAGTATTTGTAGATAAT
TATATGTGTAGAAAGCAATTACTTATTATATACGATGAGTAGTAGATGCTAGTGAATTTT
GGTTATTGTCGTCGGCGTCCACATCAATATCATCATAAAGATGTTGTGGCGCTAGACTGC
TCATTTCGTCACAATCTATGCAGAACTAGAGACAGCTAATTTCTTTAAATGTTCCATAAA
TCCTTGAAGTGATACATCATCCGTTAGTACTGCACTACCGGAATCATCTACTTGAGACTG
ACCAAATGAATACATTGTATGATGTGTTAATGATGGATTAAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4788#0      GGAATACAATTTACTGAATAAAAAACAACTCATTTACAAGCTGAGTAAACGAACAAATCC 60
consensus_4788#1      ------------------------------------------------------------
                                                                                  

consensus_4788#0      CCAAACTTGTGCGTTCATTAAAAACCCTGGGGAGCGAGGAAACAAAACAATTTTTCCATT 120
consensus_4788#1      ---------------------------------------------------TTTTCCATT 9
                                                                         *********

consensus_4788#0      GAAATCAAAAACAAATAAAAGTAAAAATTATTACCCAAAAAAAATTCCAACCAATTTAGC 180
consensus_4788#1      GAAATCAAGAACAAATAAAAGTAGAAATTATTACACGAAAAAAATTACAACCAAATTAGC 69
                      ******** ************** ********** * ********* ******* *****

consensus_4788#0      GGGGAAAAAGTAAAAATGAATAAAGGGGGGGAAACAGTATTTGTAAATAATTATATGGGT 240
consensus_4788#1      GGGGAAAAAGTAAAAATGAATAAAAGGTGGGAAACAGTATTTGTAGATAATTATATGTGT 129
                      ************************ ** ***************** *********** **

consensus_4788#0      AAAAAGCAATTACTTATTATATACAATGAGTAGTAAATGCTAGGGAATTTTGGTTATTGG 300
consensus_4788#1      AGAAAGCAATTACTTATTATATACGATGAGTAGTAGATGCTAGTGAATTTTGGTTATTGT 189
                      * ********************** ********** ******* *************** 

consensus_4788#0      CGTCGGCGTCCACATCAATATCATCATAAAAATGTTGGGGCGCTAAACTGCTCATTTCGT 360
consensus_4788#1      CGTCGGCGTCCACATCAATATCATCATAAAGATGTTGTGGCGCTAGACTGCTCATTTCGT 249
                      ****************************** ****** ******* **************

consensus_4788#0      CACAATCTATGCAAAACTAAAAACAGCTAATTTCTTTAAATGTTCCATAAATCCTTGAAG 420
consensus_4788#1      CACAATCTATGCAGAACTAGAGACAGCTAATTTCTTTAAATGTTCCATAAATCCTTGAAG 309
                      ************* ***** * **************************************

consensus_4788#0      GGATACATCATCCGTTAGTACTGCACTACCGGAATCCTGACC------------------ 462
consensus_4788#1      TGATACATCATCCGTTAGTACTGCACTACCGGAATCATCTACTTGAGACTGACCAAATGA 369
                       *********************************** *   *                  

consensus_4788#0      ---------------------------------
consensus_4788#1      ATACATTGTATGATGTGTTAATGATGGATTAAC 402