These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4797#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 623 fasta sequence [TTGAACCAGCACTTGTTGTTTCCATCTTCCCCGTCACGACGTCTGCACACATTAACTTTAGATGAAATGCATACAGTTTTTTTTAAAGCGCGTTCATTCTTACGAAGCTCGTAAACCTGAAAAATGAGTGATGTTACAGAGAACACAGCAATACACGTTGCATATATTTCGTACTCGACACAAAACCAGATTACGCAGCTGAACACTTGAAAGCAATGAAACGGAGTGAGGCATCCATTCAAAACGAGCCTCATTATGGGTGTAAGACTGACATCGATCTTATTAATCCCATACAAGTTTCGACGAGTTTCAATTAGATCCGTAGTCAGGGTGGGTGCATTTAATACTTCATCGTAAGGACGTTCATCCCAGTTTTGTAGTAGCTCAAAATTTTCAGACTCGAAGTTCCAGATATACTTCAGCTTTTTATGTATGATATACGGGCGTTTTGTCTGGTTCTCAAGAAAAGCGTCCGTTGTCGAACTGTCATATTGAGACCTTGATTAAAAAAGAATAAAGGTTGGTTTTACTTATCTCACAGCCCATAATTTGCAACAGTAATATCAATCGAGTGTTAACTTAACCTTGACTTTCCTCGCGTAGGATATTGGACTNTATGGATG] [+] EMBL CD162475 [TTGAACCAGCACTTGTTGTTTCCATCTTCCCCGTCACGACGTCTGCACACATTAACTTTAGATGAAATGCATACAGTTTTTTTTAAAGCGCGTTCATTCTTACGAAGCTCGTAAACCTGAAAAATGAGTGATGTTACAGAGAACACAGCAATACACGTTGCATATATTTCGTACTCGACACAAAACCAGATTACGCAGCTGAACACTTGAAAGCAATGAAACGGAGTGAGGCATCCATTCAAAACGAGCCTCATTATGGGTGTAAGACTGACATCGATCTTATTAATCCCATACAAGTTTCGACGAGTTTCAATTAGATCCGTAGTCAGGGTGGGTGCATTTAATACTTCATCGTAAGGACGTTCATCCCAGTTTTGTAGTAGCTCAAAATTTTCAGACTCGAAGTTCCAGATATACTTCAGCTTTTTATGTATGATATACGGGCGTTTTGTCTGGTTCTCAAGAAAAGCGTCCGTTGTCGAACTGTCATATTGAGACCTTGATTAAAAAAGAATAAAGGTTGGTTTTACTTATCTCACAGCCCATAATTTGCAACAGTAATATCAATCGAGTGTTAACTTAACCTTGACTTTCCTCGCGTAGGATATTGGACTNTATGGATG] consensusID : consensus_4797#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 272 fasta sequence [CTTTAAAAAAAACTGTATGCATTTCATCTAAAGTTAATGTGTGCAGACGTCGTGACGGGGAAGATGATTTTATGCTTGTCGATTCAACCGAATTGGTGCCAGGAGATTTAATCGCCATTCCCAGTAGTGGATGTTTGATGCAATGTGATGCAGTATTACTGATGGGGAACTGCATTGTGAATGAAAGTAGCTTAACAGGTGAAAGCCTTCCGATTACAAAAATCCCACTTCCCAATGGACAATATGAAAATACTACGTTTGATTTTCGTTCA] [+] EMBL CD195718 [CTTTAAAAAAAACTGTATGCATTTCATCTAAAGTTAATGTGTGCAGACGTCGTGACGGGGAAGATGATTTTATGCTTGTCGATTCAACCGAATTGGTGCCAGGAGATTTAATCGCCATTCCCAGTAGTGGATGTTTGATGCAATGTGATGCAGTATTACTGATGGGGAACTGCATTGTGAATGAAAGTAGCTTAACAGGTGAAAGCC ] [+] EMBL CD182698 [ gaTTTATGCTTGTCGATTCAACCGAATTGGTGCCAGGAGATTTAATCGCCATTCCCAGTAGTGGATGTTTGATGCAATGTGATGCAGTATTACTGATGGGGTACTGCATTGTGAATGAAAGTAGCTTAACAGGTGAAAGCCTTCCGATTACAAAAATCCCACTTCCCAATGGACAATATGAAAATACTACGTTTGATTTTCGTTCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4797#0 TTGAACCAGCACTTGTTGTTTCCATCTTCCCCGTCACGACGTCTGCACACATTAACTTTA 60 consensus_4797#1 -------------------------------------------------------CTTTA 5 ***** consensus_4797#0 GATGAAA-TGCATACAGTTTTTTTTAAAGCGCGTTCATTCTTACGAAGCTCGTAAACCTG 119 consensus_4797#1 AAAAAAACTGTATGCA-TTTCATCTAAA----GTTAATGTGTGCAGACGTCGTGA-CGGG 59 * *** ** ** ** *** * **** *** ** * * * **** * * * consensus_4797#0 AAAAATGAGTGATGTTACAGAGAACACAGCAATACACGTTGCATATATTTCGTACTCGAC 179 consensus_4797#1 GAAGATGATTT-TATGCTTGTCGATTCAACCGAATTGGTGCCAGGAGATT--TAATCGCC 116 ** **** * * * * * ** * * ** ** ** ** *** * consensus_4797#0 ACAAAACCAGATTACGCAGCTGAACACTTGAAAGCAATGAAACGGAGTGAGGCATCCATT 239 consensus_4797#1 AT---------TCCCAGTAGTGGATGTTTGAT-GCAATGTGATGCAGTA------TTACT 160 * * * ** * **** ****** * * *** * * consensus_4797#0 CAAAACGAGCCTCATTATGGGTGTAAGACTGACATCGATCTTATTAATCCCATACAAGTT 299 consensus_4797#1 GATGGGGAACTGCATTGTGAATGAAAG--TAGCTT--AACAGGTGAAAGCCTTCCGA--T 214 * ** * **** ** ** *** * * * * * * ** ** * * * * consensus_4797#0 TCGACGAGTTTCAATTAGATCCGTAGTCAGGGTGGGTGCATTTAATACTTCATCGTAAGG 359 consensus_4797#1 TACAAAAATCCCACTT--CCCAATGGACAATATGAA-------AATACTACGTTTGATTT 265 * * * * ** ** * * * ** ** ****** * * * consensus_4797#0 ACGTTCATCCCAGTTTTGTAGTAGCTCAAAATTTTCAGACTCGAAGTTCCAGATATACTT 419 consensus_4797#1 TCGTTCA----------------------------------------------------- 272 ****** consensus_4797#0 CAGCTTTTTATGTATGATATACGGGCGTTTTGTCTGGTTCTCAAGAAAAGCGTCCGTTGT 479 consensus_4797#1 ------------------------------------------------------------ consensus_4797#0 CGAACTGTCATATTGAGACCTTGATTAAAAAAGAATAAAGGTTGGTTTTACTTATCTCAC 539 consensus_4797#1 ------------------------------------------------------------ consensus_4797#0 AGCCCATAATTTGCAACAGTAATATCAATCGAGTGTTAACTTAACCTTGACTTTCCTCGC 599 consensus_4797#1 ------------------------------------------------------------ consensus_4797#0 GTAGGATATTGGACTNTATGGATG 623 consensus_4797#1 ------------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||