These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4799#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 504 fasta sequence [CATATCACTGTTATCCACTGGTGTCTCCACGGCAATAGTTCTAGACGATGTTCTTAATCTCGGTTTCTCTTCATTTTCTTCTTCGCTATCAGACAATAACAGATCTTCCCATAGCCTGAAATTTTATTACATTATCAAGCCTATTAAAAGACCTCACTTATGACGCTCAGCTAATGTGATAGTCTCCGAAGGCAAATTTGATTTTTCGGATGCACATATCTTCTGAAGTGTATGTATTGTCCTACTACCGGGAGATACTTGGTCAGTTTTAGGCGTATTCTTGTTAAAATCAGGAACCGGGATGGGAGTTGTTGGTACTTTATGCTGGCGATTTACGAAAGGATGTGGGACAAAGTTATAACACCCTAGTGCTTTAAAACGAATGCACCAGCTGACATCAGTAGGTTCATATTGATAAACTGATGACCAGGGGTCTCTAACCTCTAACTCTGTATGTTTGGGCCATATCAAACTACTTGAATTAGAGATATTTTGTTCGGTAGT] [+] EMBL CD189299 [CATATCACTGTTATCCACTGGTGTCTCCACGGCAATAGTTCTAGACGATGTTCTTAATCTCGGTTTCTCTTCATTTTCTTCTTCGCTATCAGACAATAACAGATCTTCCCATAGCCTGAAATTTTATTACATTATCAAGCCTATTAAAAGACCTCACTTATGACGCTCAGCTAATGTGATAGTCTCCGAAGGCAAATTTGATTTTTCGGATGCACATATCTTCTGAAGTGTATGTATTGTCCTACTACCGGGAGATACTTGGTCAGTTTTAGGCGTATTCTTGTTAAAATCAGGAACCGGGATGGGAGTTGTTGGTACTTTATGCTGGCGATTTACGAAAGGATGTGGGACAAAGTTATAACACCCTAGTGCTTTAAAACGAATGCACCAGCTGACATCAGTAGGTTCATATTGATAAACTGATGACCAGGGGTCTCTAACCTCTAACTCTGTATGTTTGGGCCATATCAAACTACTTGAATTAGAGATATTTTGTTCGGTAGT] consensusID : consensus_4799#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 314 fasta sequence [CATATCACTGTTATCCACTGGTGTCTCCACGGCAATAGTTCTAGACGATGTTCTTAATCTCGGTTTCTCTTCATTTTCTTCTTCGCTATCAGACAATAACAGATCTTCCCATAGCTTATGACGCTCAGCTAATGTGATAGTCTCCGAAGGCAAATTTGATTTTTCGGATGTACATATCTTCTGAAGTGTATGTATTGTCCTACTACCGGGAGATACTTGGTCAGTTTTAGGCGTATTCTTGTTAAAATCAGGAACCGGGATGGGAGTTGTTGGTACTTTATGCTGGCGATTTACGAAAGGAGGTGGGACAAAGT] [+] EMBL CD200564 [CATATCACTGTTATCCACTGGTGTCTCCACGGCAATAGTTCTAGACGATGTTCTTAATCTCGGTTTCTCTTCATTTTCTTCTTCGCTATCAGACAATAACAGATCTTCCCATAGCTTATGACGCTCAGCTAATGTGATAGTCTCCGAAGGCAAATTTGATTTTTCGGATGTACATATCTTCTGAAGTGTATGTATTGTCCTACTACCGGGAGATACTTGGTCAGTTTTAGGCGTATTCTTGTTAAAATCAGGAACCGGGATGGGAGTTGTTGGTACTTTATGCTGGCGATTTACGAAAGGAGGTGGGACAAAGT] [+] EMBL CD091750 [ TCACTGTTATCCACTGGTGTCTCCACGGCAATAGTTCTAGACGATGTTCTTAATCTCGGTTTCTCTTCATTTTCTTCTTCGCTATCAGACAATAACAGATCTTCCCATAGCTTATGACGCTCAGCTAATGTGATAGTCTCCGAAGGCAAATTTGATTTTTCGGATGTACATATCTTCTGAAGTGTATGTATTGTCCTACTACCGGGAGATACTTGGTCAGTTTTAGGCGTATTCTTGTTAAAATCAGGAACCGGGATGGGAGTTGCTGGTACTT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4799#0 CATATCACTGTTATCCACTGGTGTCTCCACGGCAATAGTTCTAGACGATGTTCTTAATCT 60 consensus_4799#1 CATATCACTGTTATCCACTGGTGTCTCCACGGCAATAGTTCTAGACGATGTTCTTAATCT 60 ************************************************************ consensus_4799#0 CGGTTTCTCTTCATTTTCTTCTTCGCTATCAGACAATAACAGATCTTCCCATAGCCTGAA 120 consensus_4799#1 CGGTTTCTCTTCATTTTCTTCTTCGCTATCAGACAATAACAGATCTTCCCATAGC----- 115 ******************************************************* consensus_4799#0 ATTTTATTACATTATCAAGCCTATTAAAAGACCTCACTTATGACGCTCAGCTAATGTGAT 180 consensus_4799#1 -------------------------------------TTATGACGCTCAGCTAATGTGAT 138 *********************** consensus_4799#0 AGTCTCCGAAGGCAAATTTGATTTTTCGGATGCACATATCTTCTGAAGTGTATGTATTGT 240 consensus_4799#1 AGTCTCCGAAGGCAAATTTGATTTTTCGGATGTACATATCTTCTGAAGTGTATGTATTGT 198 ******************************** *************************** consensus_4799#0 CCTACTACCGGGAGATACTTGGTCAGTTTTAGGCGTATTCTTGTTAAAATCAGGAACCGG 300 consensus_4799#1 CCTACTACCGGGAGATACTTGGTCAGTTTTAGGCGTATTCTTGTTAAAATCAGGAACCGG 258 ************************************************************ consensus_4799#0 GATGGGAGTTGTTGGTACTTTATGCTGGCGATTTACGAAAGGATGTGGGACAAAGTTATA 360 consensus_4799#1 GATGGGAGTTGTTGGTACTTTATGCTGGCGATTTACGAAAGGAGGTGGGACAAAGT---- 314 ******************************************* ************ consensus_4799#0 ACACCCTAGTGCTTTAAAACGAATGCACCAGCTGACATCAGTAGGTTCATATTGATAAAC 420 consensus_4799#1 ------------------------------------------------------------ consensus_4799#0 TGATGACCAGGGGTCTCTAACCTCTAACTCTGTATGTTTGGGCCATATCAAACTACTTGA 480 consensus_4799#1 ------------------------------------------------------------ consensus_4799#0 ATTAGAGATATTTTGTTCGGTAGT 504 consensus_4799#1 ------------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||