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These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 4799 cluster # 4799       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4799#0 length = 504 sequences # 1  
consensus_4799#1 length = 314 sequences # 2  

consensusID : consensus_4799#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 504
fasta sequence
                              [CATATCACTGTTATCCACTGGTGTCTCCACGGCAATAGTTCTAGACGATGTTCTTAATCTCGGTTTCTCTTCATTTTCTTCTTCGCTATCAGACAATAACAGATCTTCCCATAGCCTGAAATTTTATTACATTATCAAGCCTATTAAAAGACCTCACTTATGACGCTCAGCTAATGTGATAGTCTCCGAAGGCAAATTTGATTTTTCGGATGCACATATCTTCTGAAGTGTATGTATTGTCCTACTACCGGGAGATACTTGGTCAGTTTTAGGCGTATTCTTGTTAAAATCAGGAACCGGGATGGGAGTTGTTGGTACTTTATGCTGGCGATTTACGAAAGGATGTGGGACAAAGTTATAACACCCTAGTGCTTTAAAACGAATGCACCAGCTGACATCAGTAGGTTCATATTGATAAACTGATGACCAGGGGTCTCTAACCTCTAACTCTGTATGTTTGGGCCATATCAAACTACTTGAATTAGAGATATTTTGTTCGGTAGT]

[+] EMBL CD189299             [CATATCACTGTTATCCACTGGTGTCTCCACGGCAATAGTTCTAGACGATGTTCTTAATCTCGGTTTCTCTTCATTTTCTTCTTCGCTATCAGACAATAACAGATCTTCCCATAGCCTGAAATTTTATTACATTATCAAGCCTATTAAAAGACCTCACTTATGACGCTCAGCTAATGTGATAGTCTCCGAAGGCAAATTTGATTTTTCGGATGCACATATCTTCTGAAGTGTATGTATTGTCCTACTACCGGGAGATACTTGGTCAGTTTTAGGCGTATTCTTGTTAAAATCAGGAACCGGGATGGGAGTTGTTGGTACTTTATGCTGGCGATTTACGAAAGGATGTGGGACAAAGTTATAACACCCTAGTGCTTTAAAACGAATGCACCAGCTGACATCAGTAGGTTCATATTGATAAACTGATGACCAGGGGTCTCTAACCTCTAACTCTGTATGTTTGGGCCATATCAAACTACTTGAATTAGAGATATTTTGTTCGGTAGT]


>consensus_4799#0 CATATCACTGTTATCCACTGGTGTCTCCACGGCAATAGTTCTAGACGATGTTCTTAATCT CGGTTTCTCTTCATTTTCTTCTTCGCTATCAGACAATAACAGATCTTCCCATAGCCTGAA ATTTTATTACATTATCAAGCCTATTAAAAGACCTCACTTATGACGCTCAGCTAATGTGAT AGTCTCCGAAGGCAAATTTGATTTTTCGGATGCACATATCTTCTGAAGTGTATGTATTGT CCTACTACCGGGAGATACTTGGTCAGTTTTAGGCGTATTCTTGTTAAAATCAGGAACCGG GATGGGAGTTGTTGGTACTTTATGCTGGCGATTTACGAAAGGATGTGGGACAAAGTTATA ACACCCTAGTGCTTTAAAACGAATGCACCAGCTGACATCAGTAGGTTCATATTGATAAAC TGATGACCAGGGGTCTCTAACCTCTAACTCTGTATGTTTGGGCCATATCAAACTACTTGA ATTAGAGATATTTTGTTCGGTAGT



consensusID : consensus_4799#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 314
fasta sequence
                              [CATATCACTGTTATCCACTGGTGTCTCCACGGCAATAGTTCTAGACGATGTTCTTAATCTCGGTTTCTCTTCATTTTCTTCTTCGCTATCAGACAATAACAGATCTTCCCATAGCTTATGACGCTCAGCTAATGTGATAGTCTCCGAAGGCAAATTTGATTTTTCGGATGTACATATCTTCTGAAGTGTATGTATTGTCCTACTACCGGGAGATACTTGGTCAGTTTTAGGCGTATTCTTGTTAAAATCAGGAACCGGGATGGGAGTTGTTGGTACTTTATGCTGGCGATTTACGAAAGGAGGTGGGACAAAGT]

[+] EMBL CD200564             [CATATCACTGTTATCCACTGGTGTCTCCACGGCAATAGTTCTAGACGATGTTCTTAATCTCGGTTTCTCTTCATTTTCTTCTTCGCTATCAGACAATAACAGATCTTCCCATAGCTTATGACGCTCAGCTAATGTGATAGTCTCCGAAGGCAAATTTGATTTTTCGGATGTACATATCTTCTGAAGTGTATGTATTGTCCTACTACCGGGAGATACTTGGTCAGTTTTAGGCGTATTCTTGTTAAAATCAGGAACCGGGATGGGAGTTGTTGGTACTTTATGCTGGCGATTTACGAAAGGAGGTGGGACAAAGT]
[+] EMBL CD091750             [    TCACTGTTATCCACTGGTGTCTCCACGGCAATAGTTCTAGACGATGTTCTTAATCTCGGTTTCTCTTCATTTTCTTCTTCGCTATCAGACAATAACAGATCTTCCCATAGCTTATGACGCTCAGCTAATGTGATAGTCTCCGAAGGCAAATTTGATTTTTCGGATGTACATATCTTCTGAAGTGTATGTATTGTCCTACTACCGGGAGATACTTGGTCAGTTTTAGGCGTATTCTTGTTAAAATCAGGAACCGGGATGGGAGTTGCTGGTACTT                                    ]


>consensus_4799#1 CATATCACTGTTATCCACTGGTGTCTCCACGGCAATAGTTCTAGACGATGTTCTTAATCT CGGTTTCTCTTCATTTTCTTCTTCGCTATCAGACAATAACAGATCTTCCCATAGCTTATG ACGCTCAGCTAATGTGATAGTCTCCGAAGGCAAATTTGATTTTTCGGATGTACATATCTT CTGAAGTGTATGTATTGTCCTACTACCGGGAGATACTTGGTCAGTTTTAGGCGTATTCTT GTTAAAATCAGGAACCGGGATGGGAGTTGTTGGTACTTTATGCTGGCGATTTACGAAAGG AGGTGGGACAAAGT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4799#0      CATATCACTGTTATCCACTGGTGTCTCCACGGCAATAGTTCTAGACGATGTTCTTAATCT 60
consensus_4799#1      CATATCACTGTTATCCACTGGTGTCTCCACGGCAATAGTTCTAGACGATGTTCTTAATCT 60
                      ************************************************************

consensus_4799#0      CGGTTTCTCTTCATTTTCTTCTTCGCTATCAGACAATAACAGATCTTCCCATAGCCTGAA 120
consensus_4799#1      CGGTTTCTCTTCATTTTCTTCTTCGCTATCAGACAATAACAGATCTTCCCATAGC----- 115
                      *******************************************************     

consensus_4799#0      ATTTTATTACATTATCAAGCCTATTAAAAGACCTCACTTATGACGCTCAGCTAATGTGAT 180
consensus_4799#1      -------------------------------------TTATGACGCTCAGCTAATGTGAT 138
                                                           ***********************

consensus_4799#0      AGTCTCCGAAGGCAAATTTGATTTTTCGGATGCACATATCTTCTGAAGTGTATGTATTGT 240
consensus_4799#1      AGTCTCCGAAGGCAAATTTGATTTTTCGGATGTACATATCTTCTGAAGTGTATGTATTGT 198
                      ******************************** ***************************

consensus_4799#0      CCTACTACCGGGAGATACTTGGTCAGTTTTAGGCGTATTCTTGTTAAAATCAGGAACCGG 300
consensus_4799#1      CCTACTACCGGGAGATACTTGGTCAGTTTTAGGCGTATTCTTGTTAAAATCAGGAACCGG 258
                      ************************************************************

consensus_4799#0      GATGGGAGTTGTTGGTACTTTATGCTGGCGATTTACGAAAGGATGTGGGACAAAGTTATA 360
consensus_4799#1      GATGGGAGTTGTTGGTACTTTATGCTGGCGATTTACGAAAGGAGGTGGGACAAAGT---- 314
                      ******************************************* ************    

consensus_4799#0      ACACCCTAGTGCTTTAAAACGAATGCACCAGCTGACATCAGTAGGTTCATATTGATAAAC 420
consensus_4799#1      ------------------------------------------------------------
                                                                                  

consensus_4799#0      TGATGACCAGGGGTCTCTAACCTCTAACTCTGTATGTTTGGGCCATATCAAACTACTTGA 480
consensus_4799#1      ------------------------------------------------------------
                                                                                  

consensus_4799#0      ATTAGAGATATTTTGTTCGGTAGT 504
consensus_4799#1      ------------------------
                                              




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)