cluster # 4808

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Schistosoma mansoni
cluster # 4808 cluster # 4808 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4808#0 length = 364 sequences # 2

consensus_4808#1 length = 331 sequences # 1

consensusID : consensus_4808#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 364
fasta sequence

                              [CACTGACTGTACAGCATCCGACACAGAACCCGTCTGCAGTCTGTCCTCAGTCAATGACGGCATCGGAACCGTGATCGTTTCTACATCCCAACTGGTCTCGTCGATCGGCTCAGGTGTCGCTTCGAATCGACGACACCTGGAGAAGAGGAGTTGGTGAACGTGACGGACAAACAGGGTGTAGTTGTTGGTCAGGAGAAACGAAGGAGGAGAAGACGAACCACTCTCGGACCACTGGGCGGATCGACGACACCTGGAGAAGAGGAGTTGGTGAACGTGACGGACAAACAGGGTGTAGTTGTTGGTCAGGAAGATCATTAGGAAGGGATAAGAAGAAATTGTCTACAAAGCCAACAGATGGAGCGGT]

[+] EMBL CD145994             [CACTGACTGTACAGCATCCGACACAGAACCCGTCTGCAGTCTGTCCTCAGTCAATGACGGCATCGGAACCGTGATCGTTTCTACATCCCAACTGGTCTCGTCGATCGGCTCAGGTGTCGCTTCGAATCGACGACACCTGGAGAAGAGGAGTTGGTGAACGTGACGGACAAACAGGGTGTAGTTGTTGGTCAGGAGAAACGAAGGAGGAGAAGACGAACCACTCTCGGACCACTGGGCGGATCGACGACACCTGGAGAAGAGGAGTTGGTGAACGTGACGGACAAACAGGGTGTAGTTGTTGGTCAGG                                                         ]
[+] EMBL CD130945             [                                                                                                                                                                                                   AAACGAAGGAGGAGAAGACGAACCACTCTC GACCACTGGGCGAATCGACGACACCTGGAGAAGAGGAGTTGGTGAACGTGACGGACAAACAGGGTGTAGTTGTTGGTCAGGAAGATCATTAGGAAGGGATAAGAAGAAATTGTCTACAAAGCCAACAGATGGAGCGGT]




>consensus_4808#0
CACTGACTGTACAGCATCCGACACAGAACCCGTCTGCAGTCTGTCCTCAGTCAATGACGG
CATCGGAACCGTGATCGTTTCTACATCCCAACTGGTCTCGTCGATCGGCTCAGGTGTCGC
TTCGAATCGACGACACCTGGAGAAGAGGAGTTGGTGAACGTGACGGACAAACAGGGTGTA
GTTGTTGGTCAGGAGAAACGAAGGAGGAGAAGACGAACCACTCTCGGACCACTGGGCGGA
TCGACGACACCTGGAGAAGAGGAGTTGGTGAACGTGACGGACAAACAGGGTGTAGTTGTT
GGTCAGGAAGATCATTAGGAAGGGATAAGAAGAAATTGTCTACAAAGCCAACAGATGGAG
CGGT

consensusID : consensus_4808#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 331
fasta sequence

                              [ATGCTTCATATCACTCTGCACTGATGGATCATCGAATCGACGACACCTGGAGAAGAGGAGTTGGTGAACGTGACGGACAAACAGGGTGTAGTTGTTGGTCAGGAGAAACGAAGGAGGAGAAGACGAACCACTCTCGGACCACTGGGCGAATCGATGACACCTGGAGAAGAGGAGTTGGTGAACGTGACGGACAAACAGGGTGTAGTTGTTGGTCAGGAGAAACGAAGGAGGAGAAGACGAACCACTCTCGGACCACTGGGCGAATCGACGACACCTGGAGAAGAGGAGTTGGTGAACGTGACGGACAAACAGGGTGTAGTTGTTGGTCAGG]

[+] EMBL CD145911             [ATGCTTCATATCACTCTGCACTGATGGATCATCGAATCGACGACACCTGGAGAAGAGGAGTTGGTGAACGTGACGGACAAACAGGGTGTAGTTGTTGGTCAGGAGAAACGAAGGAGGAGAAGACGAACCACTCTCGGACCACTGGGCGAATCGATGACACCTGGAGAAGAGGAGTTGGTGAACGTGACGGACAAACAGGGTGTAGTTGTTGGTCAGGAGAAACGAAGGAGGAGAAGACGAACCACTCTCGGACCACTGGGCGAATCGACGACACCTGGAGAAGAGGAGTTGGTGAACGTGACGGACAAACAGGGTGTAGTTGTTGGTCAGG]




>consensus_4808#1
ATGCTTCATATCACTCTGCACTGATGGATCATCGAATCGACGACACCTGGAGAAGAGGAG
TTGGTGAACGTGACGGACAAACAGGGTGTAGTTGTTGGTCAGGAGAAACGAAGGAGGAGA
AGACGAACCACTCTCGGACCACTGGGCGAATCGATGACACCTGGAGAAGAGGAGTTGGTG
AACGTGACGGACAAACAGGGTGTAGTTGTTGGTCAGGAGAAACGAAGGAGGAGAAGACGA
ACCACTCTCGGACCACTGGGCGAATCGACGACACCTGGAGAAGAGGAGTTGGTGAACGTG
ACGGACAAACAGGGTGTAGTTGTTGGTCAGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4808#0      ------CAC-TGACTGTACAGCATCCGA-CACAGAACC-----CGTCTGCAGTCT-GTCC 46
consensus_4808#1      ATGCTTCATATCACTCTGCACTGATGGATCATCGAATCGACGACACCTGGAGAAGAGGAG 60
                            **  * *** * **      ** **  *** *     *  *** **    *   

consensus_4808#0      TCAGTCAA--TGACGG-CATCGGAACCGTGATCGTTTCT-----ACATCCCAACTGGTCT 98
consensus_4808#1      TTGGTGAACGTGACGGACAAACAGGGTGTAGTTGTTGGTCAGGAGAAACGAAGGAGGAGA 120
                      *  ** **  ****** **        **  * ***  *       * *  *   **   

consensus_4808#0      CGTCGATCGGCTCAGGTGTCGCTT--CGAATCGACGACACCTGGAGAAGAGGAGTTGGTG 156
consensus_4808#1      AGACGAACCACTCTCGGACCACTGGGCGAATCGATGACACCTGGAGAAGAGGAGTTGGTG 180
                       * *** *  ***  *   * **   ******** *************************

consensus_4808#0      AACGTGACGGACAAACAGGGTGTAGTTGTTGGTCAGGAGAAACGAAGGAGGAGAAGACGA 216
consensus_4808#1      AACGTGACGGACAAACAGGGTGTAGTTGTTGGTCAGGAGAAACGAAGGAGGAGAAGACGA 240
                      ************************************************************

consensus_4808#0      ACCACTCTCGGACCACTGGGCGGATCGACGACACCTGGAGAAGAGGAGTTGGTGAACGTG 276
consensus_4808#1      ACCACTCTCGGACCACTGGGCGAATCGACGACACCTGGAGAAGAGGAGTTGGTGAACGTG 300
                      ********************** *************************************

consensus_4808#0      ACGGACAAACAGGGTGTAGTTGTTGGTCAGGAAGATCATTAGGAAGGGATAAGAAGAAAT 336
consensus_4808#1      ACGGACAAACAGGGTGTAGTTGTTGGTCAGG----------------------------- 331
                      *******************************                             

consensus_4808#0      TGTCTACAAAGCCAACAGATGGAGCGGT 364
consensus_4808#1      ----------------------------