These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4812#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 620 fasta sequence [CTGTGGGGACTTCTGATTGATGATTGGGCACTGTTTTCGCAGGAACCGAACTTGTTGTGGAATGGAGCGATAGACGGTGACGACTGAGAGATCAGACACGAAGCAGTGAATAAAACACTGGAGGAAGGAATGACTGAGGGAAGTATTGTACAGTTGTAGAGTGAAGGAGGACAATGAATAATGGTGCGTGACCGAGCAAGCAAGCGTGTGGGTGAATGAATGTGTTGGTGAGTGCCGGATGGCGATGGGATGAGGAGTTGAGTAATCAACCGGATGTGTGATAGTCGTCCAGTGAATGAGCTGATGATGTGGAGTTGAACGTGAATGGAGACTGTGGGGACTTCTGATTGATGATTGGGCACTGTTTTCGCAGGAACTGAACTTGTT-TGGAATGGAGCGATAGACGGTGACGACTGAGAGATCAGACACGAAGCAGTGAATAAAACACTGGAGGAAGGAGTGACTGAGGGAAGTATTGTACAGTTGTAGAGTGAAGGAGGACAATGAATAATGGTGCGTGACCGAGC-AAGCAAGCGTGTGGGTGAATGAATGTGTTGGTGAGTGCCGGATGGCGATGGGATGAGGAGTTGAGTAATCAACCGGATGTGTGATAGTCGTCC] [+] EMBL CD084918 [CTGTGGGGACTTCTGATTGATGATTGGGCACTGTTTTCGCAGGAACCGAACTTGTTGTGGAATGGAGCGATAGACGGTGACGACTGAGAGATCAGACACGAAGCAGTGAATAAAACACTGGAGGAAGGAATGACTGAGGGAAGTATTGTACAGTTGTAGAGTGAAGGAGGACAATGAATAATGGTGCGTGACCGAGCAAGCAAGCGTGTGGGTGAATGAATGTGTTGGTGAGTGCCGGATGGCGATGGGATGAGGAGTTGAGTAATCAACCGGATGTGTGATAGTCGTCCAGTGAATGAGCTGATGATGTGGAGTTGAACGTGAATGGAGACTGTGGGGACTTCTGATTGATGATTGGGCACTGTTTTCGCAGGAACTGAACTTGTT TGGAATGGAGCGATAGACGGTGACGACTGAGAGATCAGACACGAAGCAGTGAATAAAACACTGGAGGAAGGAGTGACTGAGGGAAGTATTGTACAGTTGTAGAGTGAAGGAGGACAATGAATAATGGTGCGTGACCGAGC AAGCAAGCGTGTGGGTGAATGAATGTGTTGGTGAGTGCCGGATGGCGATGGGATGAGGAGTTGAGTAATCAACCGGATGTGTGATAGTCGTCC] [+] EMBL CD084946 [CTGTGGGGACTTCTGATTGATGATTGGGCACTGTTTTCGCAGGAACTGAACTTGTTGTGGAATGGAGCGATAGACGGTGACGACTGAGAGATCAGACACGAAGCAGTGAATAAAACACTGGAGGAAGGAATGACTGAGGGAAGTATTGTACAGTTGTAGAGTGAAGGAGGACAATGAATAATGGTGCGTGACCGAGCAAGCAAGCGTGTGGGTGAATGAATGTGTTGGTGAGTGCCGGATGGCGATGGGATGAGGAGTTGAGTAATCAACCGGATGTGTGATAGTCGTCCAGTGAATGAGCTGATGATGTGGAGTTGAACGTGAATGGAGACTGTGGGGACTTCTGATTGATGATTGGGCACTGTTTTCGCAGGAACTGAACTTGTTGTGGAATGGAGCGATAGACGGTGACGACTGAGAGATCAGACACGAAGCAGTGAATAAAACACTGGAGGAAGGAATGACTGAGGGAAGTATTGTACAGTTGTAGAGTGAAGGAGGACAATGAATAATGGTGCGTGACCGAGCAAAGC AGCGTGTGGGTGAATGAATGTGT ] consensusID : consensus_4812#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 235 fasta sequence [AGAAAATCAGTGTTGGGTGAATTGTATGTTAAAATGTTTTTGTTGTTGTTGTATATTTGTAGATGTGTGATAGTCGTCCAGTGAATGAGCTGATGATGTGGAGTTGAACGTGAATGGAGACTGTGGGGACTTCTGATTGATGATTGGGCACTGTTTTCGCAGGAACTGAACTTGTTGTGGAATGGAGCGATAGACGGTGACGACTGAGAGATCAGACACGAAGCAGTGAATAAAA] [+] EMBL CD126553 [AGAAAATCAGTGTTGGGTGAATTGTATGTTAAAATGTTTTTGTTGTTGTTGTATATTTGTAGATGTGTGATAGTCGTCCAGTGAATGAGCTGATGATGTGGAGTTGAACGTGAATGGAGACTGTGGGGACTTCTGATTGATGATTGGGCACTGTTTTCGCAGGAACTGAACTTGTTGTGGAATGGAGCGATAGACGGTGACGACTGAGAGATCAGACACGAAGCAGTGAATAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4812#0 CTGTGGGGACTTCTGATTGATGATTGGGCACTGTTTTCGCAGGAACCGAACTTGTTGTGG 60 consensus_4812#1 ------------------------------------------------------------ consensus_4812#0 AATGGAGCGATAGACGGTGACGACTGAGAGATCAGACACGAAGCAGTGAATAAAACACTG 120 consensus_4812#1 ------------------------------------------------------------ consensus_4812#0 GAGGAAGGAATGACTGAGGGAAGTATTGTACAGTTGTAGAGTGAAGGAGGACAATGAATA 180 consensus_4812#1 ------------------------------------------------------------ consensus_4812#0 ATGGTGCGTGACCGAGCAAGCAAGCGTGTGGGTGAATGAATGTGTTGGTGAGTGCCGGAT 240 consensus_4812#1 --------------AGAAAATCAGTGT-TGGGTGAATTG-TATGTTAAAATGTTTTTGTT 44 ** ** ** ** ********* * **** ** * * consensus_4812#0 GGCGATGGGATGAGGAGTTGAGTAATCAACCGGATGTGTGATAGTCGTCCAGTGAATGAG 300 consensus_4812#1 GTTG-------------TTGTATATTTG--TAGATGTGTGATAGTCGTCCAGTGAATGAG 89 * * *** ** * **************************** consensus_4812#0 CTGATGATGTGGAGTTGAACGTGAATGGAGACTGTGGGGACTTCTGATTGATGATTGGGC 360 consensus_4812#1 CTGATGATGTGGAGTTGAACGTGAATGGAGACTGTGGGGACTTCTGATTGATGATTGGGC 149 ************************************************************ consensus_4812#0 ACTGTTTTCGCAGGAACTGAACTTGTT-TGGAATGGAGCGATAGACGGTGACGACTGAGA 419 consensus_4812#1 ACTGTTTTCGCAGGAACTGAACTTGTTGTGGAATGGAGCGATAGACGGTGACGACTGAGA 209 *************************** ******************************** consensus_4812#0 GATCAGACACGAAGCAGTGAATAAAACACTGGAGGAAGGAGTGACTGAGGGAAGTATTGT 479 consensus_4812#1 GATCAGACACGAAGCAGTGAATAAAA---------------------------------- 235 ************************** consensus_4812#0 ACAGTTGTAGAGTGAAGGAGGACAATGAATAATGGTGCGTGACCGAGCAAGCAAGCGTGT 539 consensus_4812#1 ------------------------------------------------------------ consensus_4812#0 GGGTGAATGAATGTGTTGGTGAGTGCCGGATGGCGATGGGATGAGGAGTTGAGTAATCAA 599 consensus_4812#1 ------------------------------------------------------------ consensus_4812#0 CCGGATGTGTGATAGTCGTCC 620 consensus_4812#1 --------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||