These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4816#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 572 fasta sequence [CAGTCTTTTCACAGTTGCCTAGTCCAGTGCATCCCACTAAAACTCATCGTTTCGAACAGAGTGTTTCTGCACCACCTACTCCCTCTAATGTTCAGTCAGGGCAGAATTTTACAAATTATCTACATCAACCAGGGCATTCTTCTTCATCTTTAAGACGGTGGTGTTGGTTTGGCGATGGAGAGAGTGGACTGTGAAGAGGTGTAGTTGTATCGAGAGATGTGAGTGAGCGAGTGTATTTTTGAGTTGGAGTGTACTGACTAGACGGGAGTATAGTTTTTGTGGCGGCGGCGGTGGCGGCGACAAGAGTGGTTGGTTGATGAGTTTCAGGAGCGAAGACGGTGGTGTTGGTTTGGCTTACCCTTTCCCCCATTCATTCTCTGTTGGTACCAACCAGTCGCTTGAACCTGCTATTACTGGGCGTCAATTTCCCAATGCTTCCATAAATCCTTCTTACCACCTACAACAGTTCCAACAATCGGCTTCCCAGCCCTTACCCTTGCCTCATCCACCTGTTCCATATGGTCAGTCGTTGTCTTACTTAGCACCTTCCCTAGTAACAGCTATGGGTAATG] [+] EMBL CD148603 [CAGTCTTTTCACAGTTGCCTAGTCCAGTGCATCCCACTAAAACTCATCGTTTCGAACAGAGTGTTTCTGCACCACCTACTCCCTCTAATGTTCAGTCAGGGCAGAATTTTACAAATTATCTACATCAACCAGGGCATTCTTCTTCATCTTTAAGACGGTGGTGTTGGTTTGGCGATGGAGAGAGTGGACTGTGAAGAGGTGTAGTTGTATCGAGAGATGTGAGTGAGCGAGTGTATTTTTGAGTTGGAGTGTACTGACTAGACGGGAGTATAGTTTTTGTGGCGGCGGCGGTGGCGGCGACAAGAG ] [+] EMBL CD126860 [ TGTATTTTTGAGTTGGAGTGTACTGACTAGACGGGAGTATAGTTTTTGTGGCGGCGGCGGTGGCGGCGACAAGAGTGGTTGGTTGATGAGTTTCAGGAGCGAAGACGGTGGTGTTGGTTTGGCTTACCCTTTCCCCCATTCATTCTCTGTTGGTACCAACCAGTCGCTTGAACCTGCTATTACTGGGCGTCAATTTCCCAATGCTTCCATAAATCCTTCTTACCACCTACAACAGTTCCAACAATCGGCTTCCCAGCCCTTACCCTTGCCTCATCCACCTGTTCCATATGGTCAGTCGTTGTCTTACTTAGCACCTTCCCTAGTAACAGCTATGGGTAATG] consensusID : consensus_4816#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 502 fasta sequence [GTGGTGTTGGTTTGGCGATGGAGAGAGTGGACTGCTGAAGAGGTGTAGTTGTATCGAGAGATGTGAGTGAGCGAGTGTATTTTTGAGTTGGAGTGTACTGACTAGACGGGAGTATAGTTTTTGTGGCGGCGGCGGTGGCGGCGGCGGTGGCGGCGACAAGAGTGGTTGGTTGATGAGTTTCAGGAGCGAAGACGGTGGTGTTGGTTTGGCGATGGAGAGAGTGGACTGTGAAGAGGTGTAGTTGTATCGAGAGATGTGAGTGAGCGAGTGTATTTTTGAGTTGGAGTGTACTGACTAGACGGGAGTATAGTTTTTGTGGCGGTGGCGGTGGCGGCGACAAGAGTGGTTGGTTGATGAGTTTCAGGAGCGAAGACGGTGGTGTTGGTTTGGCGATGGAGAGAGTGGACTGTGAAGAGGTGTAGTTGTATCGAGAGATGTGAGTGAGCGAGTGTATTTTTGAGTTGGAGTGTACTGACTAGACGGGAGTATAGTTTTTGTGGCG] [+] EMBL CD148560 [GTGGTGTTGGTTTGGCGATGGAGAGAGTGGACTGCTGAAGAGGTGTAGTTGTATCGAGAGATGTGAGTGAGCGAGTGTATTTTTGAGTTGGAGTGTACTGACTAGACGGGAGTATAGTTTTTGTGGCGGCGGCGGTGGCGGCGGCGGTGGCGGCGACAAGAGTGGTTGGTTGATGAGTTTCAGGAGCGAAGACGGTGGTGTTGGTTTGGCGATGGAGAGAGTGGACTGTGAAGAGGTGTAGTTGTATCGAGAGATGTGAGTGAGCGAGTGTATTTTTGAGTTGGAGTGTACTGACTAGACGGGAGTATAGTTTTTGTGGCGGTGGCGGTGGCGGCGACAAGAGTGGTTGGTTGATGAGTTTCAGGAGCGAAGACGGTGGTGTTGGTTTGGCGATGGAGAGAGTGGACTGTGAAGAGGTGTAGTTGTATCGAGAGATGTGAGTGAGCGAGTGTATTTTTGAGTTGGAGTGTACTGACTAGACGGGAGTATAGTTTTTGTGGCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4816#0 ----------------------------------CAGTCTTTTCACAGTTGCCTAGTCCA 26 consensus_4816#1 GTGGTGTTGGTTTGGCGATGGAGAGAGTGGACTGCTGAAGAGGTGTAGTTGTATCGAGAG 60 * * ***** * * consensus_4816#0 GTGCATCCCACTAAA---ACTCATCGTTTCGAACAGAGTGTTTCTGCACCACC-TACTCC 82 consensus_4816#1 ATGTGAGTGAGCGAGTGTATTTTTGAGTTGGAGTGTACTGACTAGACGGGAGTATAGTTT 120 ** * * * * * ** ** * ** * * * ** * consensus_4816#0 CTCTAATGTTCAGTCAGGGCAGAATTTTACAAATTATCTACATCAACCAGGGCATTCTTC 142 consensus_4816#1 TTGTGGCGG-CGGCGGTGGCGGCGGCGGTGGCGGCGACAAGAGTGGTTGGTTGATGAGTT 179 * * * * * *** * * * * * ** * consensus_4816#0 TTCATCTTTAAGACGGTGGTGTTGGTTTGGCGATGGAGAGAGTGGACTGTGAAGAGGTGT 202 consensus_4816#1 TCAGGAGCGAAGACGGTGGTGTTGGTTTGGCGATGGAGAGAGTGGACTGTGAAGAGGTGT 239 * *************************************************** consensus_4816#0 AGTTGTATCGAGAGATGTGAGTGAGCGAGTGTATTTTTGAGTTGGAGTGTACTGACTAGA 262 consensus_4816#1 AGTTGTATCGAGAGATGTGAGTGAGCGAGTGTATTTTTGAGTTGGAGTGTACTGACTAGA 299 ************************************************************ consensus_4816#0 CGGGAGTATAGTTTTTGTGGCGGCGGCGGTGGCGGCGACAAGAGTGGTTGGTTGATGAGT 322 consensus_4816#1 CGGGAGTATAGTTTTTGTGGCGGTGGCGGTGGCGGCGACAAGAGTGGTTGGTTGATGAGT 359 *********************** ************************************ consensus_4816#0 TTCAGGAGCGAAGACGGTGGTGTTGGTTTGGCTTACCCTTTCCCCCATTCATTCTCTGTT 382 consensus_4816#1 TTCAGGAGCGAAGACGGTGGTGTTGGTTTGG----CGATGGAGAGAGTGGACTGTGAAGA 415 ******************************* * * * * * * consensus_4816#0 GGTACCAACCAGTCGCTTGAACCTGCTATTACTGGGCGTCAATTTCCCAATGCTTCCATA 442 consensus_4816#1 GGTGT-----AGTTGTATCGAGA-GATGTGAGTGAGCG--AGTGTATTTTTGAGTTGGAG 467 *** *** * * * * * * * ** *** * * * ** * consensus_4816#0 AATCCTTCTTACCACCTACAACAGTTCCAACAATCGGCTTCCCAGCCCTTACCCTTGCCT 502 consensus_4816#1 TGTACTGACTAGACGGGAGTATAGTTTTTGTGGCG------------------------- 502 * ** ** * * **** consensus_4816#0 CATCCACCTGTTCCATATGGTCAGTCGTTGTCTTACTTAGCACCTTCCCTAGTAACAGCT 562 consensus_4816#1 ------------------------------------------------------------ consensus_4816#0 ATGGGTAATG 572 consensus_4816#1 ---------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||