These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4822#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 443 fasta sequence [ACCAACTTCCACCATTCATGCATATAACTACAAAATCAATCATAACACATCATCTTCAGACACTAACGAAACAGGCACAACATGTACATCAAATCTGATACGTCGAGTACAATTACAGATTAATCAATAATACAAATCTGTTCTCTCTTTTATTATTAGAATAAAATAAGCAGCAATTATTATTCGATGAAATTTTTTCACTTACTTTACTTACGCCTGTTACTCCCAACGGAGCATAGGCCGCCGACCACCATTCTCCAACCCAATTCGATGAAATACACATATATATATACATATGAATGATCAGATTTCAATAGTTTCAATATATATATATATATATATACGGTCCTTATATTGGATCCAATGTTTCAGTCTTCTTCTTCTCTGGAAGGTTCTTTTCTCTCTCTCTTCCCAGTAACTTTGTCTTCTGATCCAACTTATTT] [+] EMBL CD064046 [ACCAACTTCCACCATTCATGCATATAACTACAAAATCAATCATAACACATCATCTTCAGACACTAACGAAACAGGCACAACATGTACATCAAATCTGATACGTCGAGTACAATTACAGATTAATCAATAATACAAATCTGTTCTCTCTTTTATTATTAGAATAAAATAAGCAGCAATTATTATTCGATGAAATTTTTTCACTTACTTTACTTACGCCTGTTACTCCCAACGGAGCATAGGCCGCCGACCACCATTCTCCAACCCAATTCGATGAAATACACATATATATATACATATGAATGATCAGATTTCAATAGTTTCAATATATATATATATATATATACGGTCCTTATATTGGATCCAATGTTTCAGTCTTCTTCTTCTCTGGAAGGTTCTTTTCTCTCTCTCTTCCCAGTAACTTTGTCTTCTGATCCAACTTATTT] consensusID : consensus_4822#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 309 fasta sequence [AACTACTACTACTACTACTACTGTCAACACGAATTCTCCGCCTTCTTATTCTGAAGTTGTTTTATCACGTTCCAATCATGCATATAACTACAAAATCAATCATAACACATCATCTTCAGACACTAACGAAACAGGCACAACATGTACATCAAATCTTGATACGTCGAGTACAATTACAGATTAATCAATAATACAAATCTTGTTCTCTCTTTTATTATTAGAATAAAATAAGCAGCAATTATTATTCGATGAAATTTTTTCACTTACTTTACTTACGCCTGTTACTCCCAACGGAGCATAGGCCGCCGA] [-] EMBL CD088278 [AACTACTACTACTACTACTACTGTCAACACGAATTCTCCGCCTTCTTATTCTGAAGTTGTTTTATCACGTTCCAATCATGCATATAACTACAAAATCAATCATAACACATCATCTTCAGACACTAACGAAACAGGCACAACATGTACATCAAATCTTGATACGTCGAGTACAATTACAGATTAATCAATAATACAAATCTTGTTCTCTCTTTTATTATTAGAATAAAATAAGCAGCAATTATTATTCGATGAAATTTTTTCACTTACTTTACTTACGCCTGTTACTCCCAACGGAGCATAG ] [+] EMBL BG931000 [ TTATTCTGAAGTAGTGTTATCACGTTCCAATCATGCATATAACTACAAAATCAATCATAACACATCATCTTCAGACACTAACTAAACAGGCACAACATGTACATCAAATCTTGATACGTCGAGTACAATTACAGATTAATCAATAATACAAATCTTGTTCTCTCTTTTATTATTAGAATAAAATAAGCAGCAATTATTATTCGATGAAATTTTTTCACTTACTTTACTTACGCCTGTTACTCCCAACGGAGCATAGGCCGCCGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4822#0 ------------------------------------------------------------ consensus_4822#1 AACTACTACTACTACTACTACTGTCAACACGAATTCTCCGCCTTCTTATTCTGAAGTTGT 60 consensus_4822#0 ACCAACTTCCACCATTCATGCATATAACTACAAAATCAATCATAACACATCATCTTCAGA 60 consensus_4822#1 TTTATCACGTTCCAATCATGCATATAACTACAAAATCAATCATAACACATCATCTTCAGA 120 * * *** ********************************************* consensus_4822#0 CACTAACGAAACAGGCACAACATGTACATCAAATCT-GATACGTCGAGTACAATTACAGA 119 consensus_4822#1 CACTAACGAAACAGGCACAACATGTACATCAAATCTTGATACGTCGAGTACAATTACAGA 180 ************************************ *********************** consensus_4822#0 TTAATCAATAATACAAATCT-GTTCTCTCTTTTATTATTAGAATAAAATAAGCAGCAATT 178 consensus_4822#1 TTAATCAATAATACAAATCTTGTTCTCTCTTTTATTATTAGAATAAAATAAGCAGCAATT 240 ******************** *************************************** consensus_4822#0 ATTATTCGATGAAATTTTTTCACTTACTTTACTTACGCCTGTTACTCCCAACGGAGCATA 238 consensus_4822#1 ATTATTCGATGAAATTTTTTCACTTACTTTACTTACGCCTGTTACTCCCAACGGAGCATA 300 ************************************************************ consensus_4822#0 GGCCGCCGACCACCATTCTCCAACCCAATTCGATGAAATACACATATATATATACATATG 298 consensus_4822#1 GGCCGCCGA--------------------------------------------------- 309 ********* consensus_4822#0 AATGATCAGATTTCAATAGTTTCAATATATATATATATATATATACGGTCCTTATATTGG 358 consensus_4822#1 ------------------------------------------------------------ consensus_4822#0 ATCCAATGTTTCAGTCTTCTTCTTCTCTGGAAGGTTCTTTTCTCTCTCTCTTCCCAGTAA 418 consensus_4822#1 ------------------------------------------------------------ consensus_4822#0 CTTTGTCTTCTGATCCAACTTATTT 443 consensus_4822#1 ------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||