These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4854#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 467 fasta sequence [AATGTGCTGATGATAAATGACAAATACGTGAGTTTTTGGACGATAATAATTTGCGCTTGCGTAAATGGGAATTTCTTGTCTGTGATGGCGGACACTTGGGTGGTTTTACGGTTAGTTGATTGGATTGAGTGCTAAGCTTAGATGTGTTAGGTGTAGGGCGATTTATAGGCTCCAATGGCTGAAGGCAAGTTGGTTTGTCCCGCGGTTGTACACAATGCACTGTGGATTTATGGGGTCGGAAATGAATTGATGAATGTGCAGCGAGACGGGATTCTAAACGAAGACCTAATTGGACATCTCCTGGAATTGACAATTTAGGATGAATATGACTACTTAACGAGTGGGCTGACATAAGTAAATCACGTTCATCTGATTTATTTGCCGACTCCATGTGACTGGTACTTGGTTCAGAACCACCACAGCATAAGATGCATGGTCCAATAAATGGGGGAATGCCAGAGCATTTA] [+] EMBL CD114375 [AATGTGCTGATGATAAATGACAAATACGTGAGTTTTTGGACGATAATAATTTGCGCTTGCGTAAATGGGAATTTCTTGTCTGTGATGGCGGACACTTGGGTGGTTTTACGGTTAGTTGATTGGATTGAGTGCTAAGCTTAGATGTGTTAGGTGTAGGGCGATTTATAGGCTCCAATGGCTGAAGGCAAGTTGGTTTGTCCCGCGGTTGTACACAATGCACTGTGGATTTATGGGGTCGGAAATGAATTGATGAATGTGCAGCGAGACGGGATTCTAAACGAAGACCTAATTG ] [+] EMBL CD069672 [ ACAAATACGTGAGTTTTTGGACGATAATAATTTGCGCTTGCGTAAATGGGAATTTCTTGTCTGTGATGGCGGACACTTGGGTGGTTTTACGGTTAGTTGATTGGATTGAGTGCTAAGCTTAGATGTGTTAGGTGTAGGGCGATTTATAGGCTCCAATGGCTGAAGGCAAGTTGGTTTGTCCCGCGGTTGTACACAATGCACTGTGGATTTATGGGGTCGGAAATGAATTGATGAATGTGCAGCGAGACGGGATTCTAAACGAAGACCTAATTGGACATCTCCTGGAATTGACAATTTAGGATGAATATGACTACTTAACGAGTGGGCTGACATAAGTAAATCACGTTCATCTGATTTATTTGCCGACTCCATGTGACTGGTACTTGGTTCAGAACCACCACAGCATAAGATGCATGGTCCAATAAATGGGGGAATGCCAGAGCATTTA] consensusID : consensus_4854#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 459 fasta sequence [TTAGTTGATTGGATTGAGTGCTAAGCTTAGATGTGTTAGGTGTAGGGCGATTTATAGGCTCCAATGGCTGAAGGCAAGTTGGTTTGTCCAGCTCTAAACAGTCTTGGTTATACACTCGTTCTGTAACGCATTCAAACTGGCATTGGTTATGTACAGAAATAAAACATGCTGAAAAATGTTTACAAAATCTTTATATGTTAAAAAATAACTCCGATCCGGAAAAGTTATCTCAGTATCAATGTAATACTAATAACGCTGAAAATGATGCAGAAGTTAGCTGTTCTCGTACATCTCCATACATAAATACCAAACGGAAACGACATACTTATCACAATCTCTCATCACCTAAATGCGCTAGTATAATACAGGAACTACACAAACATTCTCGTGGTGATCCTCACATTAAATGCTCTTGCNTTCCCCCATTTATTGGACCATGCATCTTATGCTGTGGTGGTT] [+] EMBL CD114382 [TTAGTTGATTGGATTGAGTGCTAAGCTTAGATGTGTTAGGTGTAGGGCGATTTATAGGCTCCAATGGCTGAAGGCAAGTTGGTTTGTCCAGCTCTAAACAGTCTTGGTTATACACTCGTTCTGTAACGCATTCAAACTGGCATTGGTTATGTACAGAAATAAAACATGCTGAAAAATGTTTACAAAATCTTTATATGTTAAAAAATAACTCCGATCCGGAAAAGTTATCTCAGTATCAATGTAATACTAATAACGCTGAAAATGATGCAGAAGTTAGCTGTTCTCGTACATCTCCATACATAAATACCAAACGGAAACGACATACTTATCACAATCTCTCATCACCTAAATGCGCTAGTATAATACAGGAACTACACAAACATTCTCGTGGTGATCCTCACATTAAATGCTCTTGCNTTCCCCCATTTATTGGACCATGCATCTTATGCTGTGGTGGTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4854#0 -------AATGTGCTGATGATAAATGACAAATACGTGAGTTTTTGGACGATA-ATAATTT 52 consensus_4854#1 TTAGTTGATTGGATTGAGTGCTAAGCTTAGATGTGTTAGGTGTAGGGCGATTTATAGGCT 60 * ** *** ** * ** ** ** * * ** **** *** * consensus_4854#0 GCGCTTGCGTAAATGGGAATTTCTTGTCTGTGATGGCGGACACTTGGGTGGTTTTACGGT 112 consensus_4854#1 CCAATGGCTGAA--GGCAAGTTGGTTTGTCCAGCTCTAAACAGTC--TTGGTTATACACT 116 * * ** ** ** ** ** * * * *** * ***** *** * consensus_4854#0 TAGTTGATTGGATTGAGTGCTAAGCTTAGATGTGTTAGGTGTAGGGCGATTTATAGGCTC 172 consensus_4854#1 CGTT---CTGTAACGCAT-TCAAACTGGCATTGGTTATGTACAG---AAATAAAACATGC 169 * ** * * * ** ** ** **** ** ** * * * * * consensus_4854#0 CAATGGCTGAAGGCAAGTTGGTTTGTCCCGCGGTTGTACACAA-TGCACTGTGGATTTAT 231 consensus_4854#1 TGAAAAATGTTTACAAAATC-TTTAT---ATGTTAAAAAATAACTCCGATCCGGAAAAGT 225 * ** *** * *** * * * * * ** * * * *** * consensus_4854#0 GGGGTCGGAAATGAATTGATGAATGTGCAGCGAGACGGGATTCTAAACGAAGACCTAATT 291 consensus_4854#1 TATCTCAGTATCAATGTAATACTAATAACGCTGAAAATGATGCAGAAGTTAGCTGTTCTC 285 ** * * * * ** * ** * *** * ** ** * * consensus_4854#0 GGACATCTCCTGGAATTGACAATTTAGGATGAATATGAC-TACTTAACGAGTGGGCTGAC 350 consensus_4854#1 GTACATCTCCATACATAAATA---CCAAACGGAAACGACATACTTATC--ACAATCTCTC 340 * ******** ** * * * * * * *** ****** * ** * consensus_4854#0 ATAAGTAAATCACGTTCATCTGATTTA-----TTTGCCGAC-TCCATGTGACTGGTACTT 404 consensus_4854#1 ATCACCTAAATGCGCTAGTATAATACAGGAACTACACAAACATTCTCGTGG-TGATCCTC 399 ** * ** ** * * * ** * * * ** * * *** ** * ** consensus_4854#0 GGTTCAGA-ACCACCACAGCATAAGATGCATGGTCCAATAAATGGGGGAATGCCAGAGCA 463 consensus_4854#1 ACATTAAATGCTCTTGCNTTCCCCCATTTATTGGACCATGCATCTT---ATGCTGTGGTG 456 * * * * * ** ** * * ** ** **** * consensus_4854#0 TTTA 467 consensus_4854#1 GTT- 459 ** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||