cluster # 4865

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Schistosoma mansoni
cluster # 4865 cluster # 4865 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4865#0 length = 300 sequences # 1

consensus_4865#1 length = 163 sequences # 2

consensusID : consensus_4865#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 300
fasta sequence

                              [GGTGTAGTCCTACTTTCGAACAGTCAGCAGTATTCGTTCACACATTGTTTGGTTCATATAAATTACAACCGAATCACAAACCAGAAGTATCTTCCGGACCACAAAATAATCTATATATAGCAAGCTCAAAGAAATCAATCGGTTTGTACAAGATCTTGACCAGAATATTAAATATCGGATCACAAGGCAAACAAATTTGGAGTTATATGTATATATCGTAATCCTGAATACTCAGTAAACAGCATTGATTGCTTGCTAATGGCTCAAGAAAAAGAGTCTCTTGTGGAGTCTCATTGGTCT]

[+] EMBL CD059256             [GGTGTAGTCCTACTTTCGAACAGTCAGCAGTATTCGTTCACACATTGTTTGGTTCATATAAATTACAACCGAATCACAAACCAGAAGTATCTTCCGGACCACAAAATAATCTATATATAGCAAGCTCAAAGAAATCAATCGGTTTGTACAAGATCTTGACCAGAATATTAAATATCGGATCACAAGGCAAACAAATTTGGAGTTATATGTATATATCGTAATCCTGAATACTCAGTAAACAGCATTGATTGCTTGCTAATGGCTCAAGAAAAAGAGTCTCTTGTGGAGTCTCATTGGTCT]




>consensus_4865#0
GGTGTAGTCCTACTTTCGAACAGTCAGCAGTATTCGTTCACACATTGTTTGGTTCATATA
AATTACAACCGAATCACAAACCAGAAGTATCTTCCGGACCACAAAATAATCTATATATAG
CAAGCTCAAAGAAATCAATCGGTTTGTACAAGATCTTGACCAGAATATTAAATATCGGAT
CACAAGGCAAACAAATTTGGAGTTATATGTATATATCGTAATCCTGAATACTCAGTAAAC
AGCATTGATTGCTTGCTAATGGCTCAAGAAAAAGAGTCTCTTGTGGAGTCTCATTGGTCT

consensusID : consensus_4865#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 163
fasta sequence

                              [AATCAATCGGTTTGTACAAGATCTTGACCAGAATATTAAATATCGGATCACAAGGCAAACAAATTTGGAGTTATATGTATATATCTGAATCCTGAATACTCATGAAACAGCATTGATTCGTTCGTAATGGCTCAAGAATTTGATGCTCTTCCTGTGGATGCTC]

[+] EMBL AA952858             [AATCAATCGGTTTGTACAAGATCTTGACCAGAATATTAAATATCGGATCACAAGGCAAACAAATTTGGAGTTATATGTATATATCTGAATCCTGAATACTCATGAAACAGCATTGATTCGTTCGTAATGGCTCAAGAATTTGATGCTCTTCCTGTGGATGCTC]
[+] EMBL SMAA98615            [AATCAATCGGTTTGTACAAGATCTTGACCAGAATATTAAATATCGGATCACAAGGCAAACAAATTTGGAGTTATATGTATATATCTGAATCCTGAATACTCATGAAACAGCATTGATTCGTTCGTAATGGCTCAAGAAAAAGATGCTCTTCCTGTGGATGCTC]




>consensus_4865#1
AATCAATCGGTTTGTACAAGATCTTGACCAGAATATTAAATATCGGATCACAAGGCAAAC
AAATTTGGAGTTATATGTATATATCTGAATCCTGAATACTCATGAAACAGCATTGATTCG
TTCGTAATGGCTCAAGAATTTGATGCTCTTCCTGTGGATGCTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4865#0      GGTGTAGTCCTACTTTCGAACAGTCAGCAGTATTCGTTCACACATTGTTTGGTTCATATA 60
consensus_4865#1      ------------------------------------------------------------
                                                                                  

consensus_4865#0      AATTACAACCGAATCACAAACCAGAAGTATCTTCCGGACCACAAAATAATCTATATATAG 120
consensus_4865#1      ------------------------------------------------------------
                                                                                  

consensus_4865#0      CAAGCTCAAAGAAATCAATCGGTTTGTACAAGATCTTGACCAGAATATTAAATATCGGAT 180
consensus_4865#1      ------------AATCAATCGGTTTGTACAAGATCTTGACCAGAATATTAAATATCGGAT 48
                                  ************************************************

consensus_4865#0      CACAAGGCAAACAAATTTGGAGTTATATGTATATATCGTAATCCTGAATACTCAGTAAAC 240
consensus_4865#1      CACAAGGCAAACAAATTTGGAGTTATATGTATATATCTGAATCCTGAATACTCATGAAAC 108
                      *************************************  ***************  ****

consensus_4865#0      AGCATTGATTGCTTGCTAATGGCTCAAGAAAAAGAGTCTCTT---GTGGAGTCTCATTGG 297
consensus_4865#1      AGCATTGATTCGTTCGTAATGGCTCAAGAATTTGATGCTCTTCCTGTGGATGCTC----- 163
                      **********  **  **************   **  *****   *****  ***     

consensus_4865#0      TCT 300
consensus_4865#1      ---