These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4887#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 721 fasta sequence [ATATACCGTCACAGATTCGAGATTTATTGGTTTACATTGCTCGTGAGGGAGTAGCTGTAACGGATTTGTTCAGAAGACCTGGAAACCAACAAGATATGAAAAAGATTATCTCTGACCTTGAAGCCGGGAGACCAATTAGATGGACAGATTACAACTTTTATACCCTTGCAAATATTGCCAAACGGTATTTGCTGCATATTGAGGGCGGGATTTTGGGTCCTGAATCTGAAGAGCAACTGCTTTCTACTCTTGACATTCCAGATGATCAAGCTCGCATCGAAGCAATGCACTGAACGGTCCTTCAAGTTTGGTGATACCGTCACTACGTCTACTGCCCTGGTATATGGTCTGATAGTTTCATCTTTCTGATTGACTAACTCAGTTTAGTGTTATGGTCATTTACAGCTTCAACTGAATCAAGTTCACAAATTCTAGCTATCGAGCATATCAACAGAGCCGTTGATATTGTTGCCACAATGTGGAGTCAGTTACTTACCAATGGCGTCCATACGAAGAAACTCGGAGATTCTGGTTTCGCACGTGCATGTGCAATAGGTATTACCAGTGTGATTGTTTCCCAACCAAGGCCTGTTTCAGCAGTTACTTGCTCTACTATTCGGCATCTGGTTTCGAATGATCTAACATACTGAAGTTAATGCTATGTCTGTGGAAGCTGTTGCTAAATCTGTTGCCGGGTCTGTTTTCCCCAGCCCCCCCCACC] [+] EMBL CD165365 [ATATACCGTCACAGATTCGAGATTTATTGGTTTACATTGCTCGTGAGGGAGTAGCTGTAACGGATTTGTTCAGAAGACCTGGAAACCAACAAGATATGAAAAAGATTATCTCTGACCTTGAAGCCGGGAGACCAATTAGATGGACAGATTACAACTTTTATACCCTTGCAAATATTGCCAAACGGTATTTGCTG ] [+] EMBL CD200548 [ AGATGGACAGATTACAACTTTTATACCCTTGCAAATATTGCCAAACGGTATTTGCTGCATATTGAGGGCGGGATTTTGGGTCCTGAATCTGAAGAGCAACTGCTTTCTACTCTTGACATTCCAGATGATCAAGCTCGCATCGAAGCAATGCACTGAACGGTCCTTCAAGTTTGGTGATACCGTCACTACGTCTACTGCCCTGGTATATGGTCTGATAGTTTCATCTTTCTGATTGACTAACTCAGTTTAGTGTTATGGTCATTTACAGCTTCAACTGAATCAAGTTCACAAATTCTAGCTATCGAGCATATCAACAGAGCCGTTGATATTGTTGCCACAATGTGGAGTCAGTTACTTACCAATGGCGTCCATACGAAGAAACTCGGAGATTCTGGTTTCGCACGTGCATGTGCAATAGGTATTACCAGTGTGATTGTTTCCCAACCAAGGCCTGTTTCAGCAGTTACTTGCTCTACTATTCGGCATCTGGTTTCGAATGATCTAACATACTGAAGTTAATGCTATGTCTGTGGAAGCTGTTGCTAAATCTGTTGCCGGGTCTGTTTTCCCCAGCCCCCCCCACC] consensusID : consensus_4887#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 437 fasta sequence [TGCTCGTGAGGGAGTAGCTGTAACGGATTTGTTCAGAAGACCTGGAAACCAACAAGATATGAAAAAGATTATCTCTGACCTTGAAGCCGGGAGACCAATTAGATGGACAGATTACAACTTTTATACCCTTGCAAATATTGCCAAACGGTATTTGCTGCATATTGAGGGCGGGATTTTGGGTCCTGAATCTGAAGAGCGACTGCTTTCTACTCTTGACATTCCAGATGATCAAGCTCGCATCGAAGCAATGCACTGGTTAGTATAATTCTGAAGATTCGTATCGTTTAATGAAACGTTGTGCTTTATGTCGTAGTGCGGTTCATAGTAATATCGTTTTCCTAATCGTTCCAGCAGGCGTTTATGCAAAACCACGGGCTCTAGTTAATGTTTATCTGTCAGTCTTCAGGCATAGATACCAATCCTGCTTTTTTAATAGT] [+] EMBL CD161295 [TGCTCGTGAGGGAGTAGCTGTAACGGATTTGTTCAGAAGACCTGGAAACCAACAAGATATGAAAAAGATTATCTCTGACCTTGAAGCCGGGAGACCAATTAGATGGACAGATTACAACTTTTATACCCTTGCAAATATTGCCAAACGGTATTTGCTGCATATTGAGGGCGGGATTTTGGGTCCTGAATCTGAAGAGCGACTGCTTTCTACTCTTGACATTCCAGATGATCAAGCTCGCATCGAAGCAATGCACTGGTTAGTATAATTCTGAAGATTCGTATCGTTTAATGAAACGTTGTGCTTTATGTCGTAGTGCGGTTCATAGTAATATCGTTTTCCTAATCGTTCCAGCAGGCGTTTATGCAAAACCACGGGCTCTAGTTAATGTTTATCTGTCAGTCTTCAGGCATAGATACCAATCCTGCTTTTTTAATAGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4887#0 ATATACCGTCACAGATTCGAGATTTATTGGTTTACATTGCTCGTGAGGGAGTAGCTGTAA 60 consensus_4887#1 -------------------------------------TGCTCGTGAGGGAGTAGCTGTAA 23 *********************** consensus_4887#0 CGGATTTGTTCAGAAGACCTGGAAACCAACAAGATATGAAAAAGATTATCTCTGACCTTG 120 consensus_4887#1 CGGATTTGTTCAGAAGACCTGGAAACCAACAAGATATGAAAAAGATTATCTCTGACCTTG 83 ************************************************************ consensus_4887#0 AAGCCGGGAGACCAATTAGATGGACAGATTACAACTTTTATACCCTTGCAAATATTGCCA 180 consensus_4887#1 AAGCCGGGAGACCAATTAGATGGACAGATTACAACTTTTATACCCTTGCAAATATTGCCA 143 ************************************************************ consensus_4887#0 AACGGTATTTGCTGCATATTGAGGGCGGGATTTTGGGTCCTGAATCTGAAGAGCAACTGC 240 consensus_4887#1 AACGGTATTTGCTGCATATTGAGGGCGGGATTTTGGGTCCTGAATCTGAAGAGCGACTGC 203 ****************************************************** ***** consensus_4887#0 TTTCTACTCTTGACATTCCAGATGATCAAGCTCGCATCGAAGCAATGCACTGAACGGTCC 300 consensus_4887#1 TTTCTACTCTTGACATTCCAGATGATCAAGCTCGCATCGAAGCAATGCACTGGTTAGTAT 263 **************************************************** ** consensus_4887#0 TTCAAGTTTGGTGATAC-CGTCACTACGTCTACTGCCCTGGTATATGGTCTGATA-GTTT 358 consensus_4887#1 ---AATTCTGAAGATTCGTATCGTTTAATGAAACGTTGTGCTTTATGTCGTAGTGCGGTT 320 ** * ** *** * ** * * * * ** * **** * * * ** consensus_4887#0 CATCTT--TCTGATTGACTAACTCAGTTTAGTGTTATGGTCATTTACAGCTTCAACTGAA 416 consensus_4887#1 CATAGTAATATCGTTTTCCTAATCGTTCCAGCAG-GCGTTTATGCAAAACC---ACGGGC 376 *** * * * ** * * ** * ** * * ** * * * ** * consensus_4887#0 TCAAGTTCACAAATTCTAGCTATCGAGCATATCAACAGAGCCGTTGATATTGTTGCCACA 476 consensus_4887#1 TCTAGTTAATG---TTTATCTGTC-AGTCTTCAGGCATAGATACCAATCCTGCTTTTTTA 432 ** **** * * ** ** ** ** * ** ** ** ** * * consensus_4887#0 ATGTGGAGTCAGTTACTTACCAATGGCGTCCATACGAAGAAACTCGGAGATTCTGGTTTC 536 consensus_4887#1 ATAGT------------------------------------------------------- 437 ** consensus_4887#0 GCACGTGCATGTGCAATAGGTATTACCAGTGTGATTGTTTCCCAACCAAGGCCTGTTTCA 596 consensus_4887#1 ------------------------------------------------------------ consensus_4887#0 GCAGTTACTTGCTCTACTATTCGGCATCTGGTTTCGAATGATCTAACATACTGAAGTTAA 656 consensus_4887#1 ------------------------------------------------------------ consensus_4887#0 TGCTATGTCTGTGGAAGCTGTTGCTAAATCTGTTGCCGGGTCTGTTTTCCCCAGCCCCCC 716 consensus_4887#1 ------------------------------------------------------------ consensus_4887#0 CCACC 721 consensus_4887#1 ----- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||