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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4902#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 671 fasta sequence
[CTCGAGGCCAAAAATTCGGCACGAGGGTTGATCGGAAACCCATTCCATGTTCCGAAAGAAATCTTTCGTCTTGTAAATCATATAAATGAATATATAACAGAGCCTGATCTATTTCGTCAAATGGGTCCATCTTCTGACATTGGTATTATACGTGATATATTGGATACAACTCCAGCTAATTGTCCTTTTCCTGAAACAATTTCTGTACATTCAATTACATCGTGTTTATTATTGTTTTTGAATACACTCCCGGAATCTGTGATACCACAAGAATTTCATGAGAAATGTTTTAATTCATTAGCAAATTTCGAATCTGCTGTACAGGCTTTACAGCATCTTCCTATTTGTAATCAGAATTTATTTTATTATTTAATTACATTTATGCAACGTTGTTTGACTTTCAAAGAACAGAATGGTACAGATATTGATCTACTTGCTCCATGTTTTGGTGAGATATTCTTTTTTGAATCGTCGTCGAACACAACAACAGCTCAAAAACATGCTGTTGCGATGAAACAGCTTAAGCGAGCCGCTTTTATTAGCATTTTTCTCCGTCAAAATTATTTCATATCTAATCCTTCACTAATGTCAACATCTCAACACTAGTTTATGATAATATTATTATTATTACTTTNTCTAAACACAGCCTTTNTTCTGTCAATATGACAAAT]
[+] EMBL CD080567 [CTCGAGGCCAAAAATTCGGCACGAGGGTTGATCGGAAACCCATTCCATGTTCCGAAAGAAATCTTTCGTCTTGTAAATCATATAAATGAATATATAACAGAGCCTGATCTATTTCGTCAAATGGGTCCATCTTCTGACATTGGTATTATACGTGATATATTGGATACAACTCCAGCTAATTGTCCTTTTCCTGAAACAATTTCTGTACATTCAATTACATCGTGTTTATTATTGTTTTTGAATACACTCCCGGAATCTGTGATACCACAAGAATTTCATGAGAAATGTTTTAATTCATTAGCAAATTTCGAATCTGCTGTACAGGCTTTACAGCATCTTCCTATTTGTAATCAGAATTTATTTTATTATTTAATTACATTTATGCAACGTTGTTTGACTTTCAAAGAACAGAATGGTACAGATATTGATCTACTTGCTCCATGTTTTGGTGAGATATTCTTTTTTGAATCGTCGTCGAACACAACAACAGCTCAAAAACATGCTGTTGCGATGAAACAGCTTAAGCGAGCCGCTTTTATTAGCATTTTTCTCCGTCAAAATTATTTCATATCTAATCCTTCACTAATGTCAACATCTCAACACTAGTTTATGATAATATTATTATTATTACTTTNTCTAAACACAGCCTTTNTTCTGTCAATATGACAAAT]
[+] EMBL CD059578 [ ATTTCATGAGAAATGTTTTAATTCATTAGCAAATTTCGAATCTGCTGTACAGGCTTTACAGCATCTTCCTATTTGTAATCAGAATTTATTTTATTATTTAATTACATTTATGCAACGTTGTTTGACTTTCAAAGAACAGAATGGTACAGATATTGATCTACTTGCTCCATGTTTTGGTGAGATATTCTTTTTTGAATCGTCGT ]
consensusID : consensus_4902#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 537 fasta sequence
[ATATACGTAATGAATTTTCTTATTTGATATTTACTTATCATCAATATGTTGTGACTTTTGTGAAAAAAATTATTTTTCTTCATTCCTTTTAAATATCCAGGCTTTACAGCATCTTCCTATTTGTAATCAGAATTTATTTTATTATTTAATTACATTTATGCAACGTTGTTTGACTTTCAAAGAACAGAATGGTACAGATATTGATCTACTTGGTAAGCTAAGTGAAGACTTATTATTACCATAGGAAGTTCATAAAAATTATTATATATTAATTTTAATTAGATAATCATTTCAAACCAGAAAGCATTAAACAATTTTATACCAGTTCCATAGTTGAAAGGTTAATTGTTCATTGCAAAATCCGAAAATGCATACTGTTGAAGAGTTCGATACCAAAATGAAATAGCTGTCCAATGCTTCCTGTATTATAGTGACTGCCTGACAAAGTGTCAGTCTGTATGGTTTATACTATTTATGTTGATAGATATAAGTAGTTTGTATCAGAGATTAAAAGTAGAATTTTTACGGACAGAAGAG]
[+] EMBL CD133901 [ATATACGTAATGAATTTTCTTATTTGATATTTACTTATCATCAATATGTTGTGACTTTTGTGAAAAAAATTATTTTTCTTCATTCCTTTTAAATATCCAGGCTTTACAGCATCTTCCTATTTGTAATCAGAATTTATTTTATTATTTAATTACATTTATGCAACGTTGTTTGACTTTCAAAGAACAGAATGGTACAGATATTGATCTACTTGGTAAGCTAAGTGAAGACTTATTATTACCATAGGAAGTTCATAAAAATTATTATATATTAATTTTAATTAGATAATCATTTCAAACCAGAAAGCATTAAACAATTTTATACCAGTTCCATAGTTGAAAGGTTAATTGTTCATTGCAAAATCCGAAAATGCATACTGTTGAAGAGTTCGATACCAAAATGAAATAGCTGTCCAATGCTTCCTGTATTATAGTGACTGCCTGACAAAGTGTCAGTCTGTATGGTTTATACTATTTATGTTGATAGATATAAGTAGTTTGTATCAGAGATTAAAAGTAGAATTTTTACGGACAGAAGAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4902#0 CTCGAGGCCAAAAATTCGGCACGAGGGTTGATCGGAAACCCATTCCATGTTCCGAAAGAA 60
consensus_4902#1 ------------------------------------------------------------
consensus_4902#0 ATCTTTCGTCTTGTAAATCATATAAATGAATATATAACAGAGCCTGATCTATTTCGTCAA 120
consensus_4902#1 -------------------ATATACGT-AATGAATTTTCTTATTTGATAT-TTACTTATC 39
***** * *** ** **** * ** * *
consensus_4902#0 ATGGGTCCATCTTCTGACATTGGTATTATACGTGATATATTGGATACAACTCCAGCTAAT 180
consensus_4902#1 ATCAAT--ATGTTGTGACTTTTGTGAAAAAAATTATTTTTCT----TCATTCCTTTTAAA 93
** * ** ** **** ** ** * * * ** * * * *** ***
consensus_4902#0 TGTCCTTTTCCTGAAACAATTTCTGTACATTCAATTACATCGTGTTTATTATTGTTTTTG 240
consensus_4902#1 TATCCAGGCTTTACAGCATCTTCC-TATTTGTAATCAGA----ATTTATTTTATTATTTA 148
* *** * * ** *** ** * *** * * ****** * * ***
consensus_4902#0 AATACACTCCCGGAATCTGTGATACCACAAGAATTTCATGAGAAATGTTTTAATTCATTA 300
consensus_4902#1 ATTACATT-------TATGCAACGTTGTTTGACTTTCA--AAGAACAGAATGGT------ 193
* **** * * ** * ** ***** * ** * *
consensus_4902#0 GCAAATTTCGAATCTGCTGTACAGGCTTTACAGCATCTTCCTATTTGTAATCAGAATTTA 360
consensus_4902#1 ACAGATATTGA-TCTACTTGGTAAGCTAAGTGAAGACTTATTATTACCATAGGAAGTTCA 252
** ** * ** *** ** * *** *** **** * * ** *
consensus_4902#0 TTTTATTATTTAATTACATTTATGCAACGTTGTTTGACTTTCAAAGAACAGAATGGTACA 420
consensus_4902#1 TAAAAATTATTA--TATATTAATTTTA-ATTAGATAATCATTTCAAACCAGAAAGCATTA 309
* * * *** ** *** ** * ** * * * * * ***** * *
consensus_4902#0 GATATTGATCTACTTGCTCCATGTTTTGGTGAGATATTCTTTTTTGAATCGTCGTCGAAC 480
consensus_4902#1 AACAATTTTATACCAGTTCCATAGTTGAAAGGTTAATTGTTCATTGCAAAATC--CGAAA 367
* * * * *** * ***** ** * *** ** *** * ** ****
consensus_4902#0 ACAACAACAGCTCAAAAACATGCTGTTGCGATGAAACAGCTTAAGCGAGCCGCTTTTATT 540
consensus_4902#1 ATGCATACTGTTGAAGAGTTCGATACCAAAATGAAATAGCTGTCCAATGCTTCCTGTATT 427
* ** * * ** * * * ****** **** ** * * ****
consensus_4902#0 AGCATTTTTCTCCGTCAAAAT--TATTTCATATCTAATCCTTCACTAATGTCAACATCTC 598
consensus_4902#1 ATAGTGACTGCCTGACAAAGTGTCAGTCTGTATGGTTTATACTATTTATGTTGATAGAT- 486
* * * * * **** * * * *** * * * **** * * *
consensus_4902#0 AACACTAGTTTATGATA-ATATTATTATTATTACTTTNTCTAAACACAGCCTTTNTTCTG 657
consensus_4902#1 ATAAGTAGTTTGTATCAGAGATTAAAAGTAGAATTTTTACGGACAGAAGAG--------- 537
* * ****** * * * **** * ** * *** * * **
consensus_4902#0 TCAATATGACAAAT 671
consensus_4902#1 --------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||