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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4928#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 614 fasta sequence
[TTCACAATATAGATCAAAGTCTACAGATGATGATCCTGGCAAACTGGCACATAGAAAGCATCAAATTACTTGGCTAGCTCATCAGGTATAATTCTTTTTCGTTTAACAGAATTATTTTGTATGTTGTTACTTGGCTATTTGTCATATATTTTGGTGAGATTGTTAGTTACCAATTTTGTAGTTATTATGTACGTTTGTTTTGACAAAGACCGTGAATTGTTCGGAGTGTGTTGGCTGGCTTCATGCTAGTTGCCACTTACCAACAACGGATACTTTGAAGGAACTATATTTCCCATGAAATTTCGAACTTGCTTCATCTAGTGTCAATCAGCAATGTTGCTAAAAAACTGGGCATCGAAAGTAGTACGTACGATACAAAATAAAATTTGTTTATTGCTTGGGGCACTGTGTAGGCGAGGCACGTGGTTTTTTTAAGGTGCCTTTTCTCAGATCTTAATCCATATAGTAGTGAAACAAAGTCAGGAGATGCAGTACCATGATCGCCGGTGACCAAAATGGTTTCATATGCCACTCGTTTCATCAGGATCATAGAATTAAAGTTCTCCGAATCCCCTTGGTAGACTCTCCTTATCCACCAACGTGGTTTAAACACT]
[+] EMBL CD078264 [TTCACAATATAGATCAAAGTCTACAGATGATGATCCTGGCAAACTGGCACATAGAAAGCATCAAATTACTTGGCTAGCTCATCAGGTATAATTCTTTTTCGTTTAACAGAATTATTTTGTATGTTGTTACTTGGCTATTTGTCATATATTTTGGTGAGATTGTTAGTTACCAATTTTGTAGTTATTATGTACGTTTGTTTTGACAAAGACCGTGAATTGTTCGGAGTGTGTTGGCTGGCTTCATGCTAGTTGCCACTTACCAACAACGGATACTTTGAAGGAACTATATTTCCCATGAAATTTCGAACTTGCTTCATCTAGTGTCAATCAGCAATGTTGCTAAAAAACTGGGCATCGAAAGTAGTACGTACGATACAAAATAAAATTTGTTTATTGCTTGGGGCACTGTGTAGGCGAGGCACGTGGTTTTTTTAAGGTGCCTTTTCTCAGATCTTAATCCATATAGTAGTGAAACAAAGTCAGGAGATGCAGTACCATGATCGCCGGTGACCAAAATGGTTTCATATGCCACTCGTTTCATCAGGATCATAGAATTAAAGTTCTCCGAATCCCCTTGGTAGACTCTCCTTATCCACCAACGTGGTTTAAACACT]
[+] EMBL CD078346 [TTCACAATATAGATCAAAGTCTACAGATGATGATCCTGGCAAACTGGCACATAGAAAGCATCAAATTACTTGGCTAGCTCATCAGGTATAATTCTTTTTCGTTTAACAGAATTATTTTGTATGTTGTTACTTGGCTATTTGTCATATATTTTGGTGAGATTGTTAGTTACCAATTTTGTAGTTATTATGTACGTTTGTTTTGACAAAGACCGTGAATTGTTCGGAGTGTGTTGGCTGGCTTCATGCTAGTTGCCACTTACCAACAACGGATACTTTGAAGGAACTATATTTCCCATGAAATTTCGAACTTGCTTCATCTAGTGTCAATCAGCAATGTTGCTAAAAAACTGGGCATCGAAAGTAGTACGTACGATACAAAATAAAATTTGTTTATTGCTTGGGGCACTGTGTAGGCGAGGCACGTGGTTTTTTTAAGGTGCCTTTTCTCAGATCTTAATCCATATAGTAGTGAAACAAAGTCAGGAGATGCAGTACCATGATCGCCGGTGACCAAAATGGTTTCATATGCCACTCGTTTCATCAGGATCATAGAATTAAAGTTCTCCGAATCCCCTTGGTAGACTCTCCT ]
consensusID : consensus_4928#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 476 fasta sequence
[TGAAAACTCAACTACTAATCGACTCACTGCAAAATCATGGGAAGAATGTTTACCAAAGGTTACTATAAATGATCCGGAAATTCTACGCCAAATGTCTTCTGTTCAAAAAGAAATCACTGAACAAGAAAAAGAAGATGACAAGGAGGATGTTGAAGAAAAAGTCTTTTGGACAGAAGAAAATTTCGTTCCAGGTCCAGAGCGTAAACGTGCACGTCTTGTTATGCCTGGTACAAAATCTAATCATATTGCTGTAAATGAATTATTACAATCAACAAATACAGAAGTAATATCAATCAATCAATCTGATTTAACAGCTGGTGCTCAATTAGAATTAATTAAATCTGTTACAAGTGATGATTCACAATATAGATCAAAGTCTACAGATGATGATCCTGGCAAACTGGCACATAGAAAGCATCAAATTACTTGGCTAGCTCATCAGGCTCAAGAAAATGAAATGGAATTGGAAAAACGTT]
[+] EMBL CD083803 [TGAAAACTCAACTACTAATCGACTCACTGCAAAATCATGGGAAGAATGTTTACCAAAGGTTACTATAAATGATCCGGAAATTCTACGCCAAATGTCTTCTGTTCAAAAAGAAATCACTGAACAAGAAAAAGAAGATGACAAGGAGGATGTTGAAGAAAAAGTCTTTTGGACAGAAGAAAATTTCGTTCCAGGTCCAGAGCGTAAACGTGCACGTCTTGTTATGCCTGGTACAAAATCTAATCATATTGCTGTAAATGAATTATTACAATCAACAAATACAGAAGTAATATCAATCAATCAATCTGATTTAACAGCTGGTGCTCAATTAGAATTAATTAAATCTGTTACAAGTGATGATTCACAATATAGATCAAAGTCTACAGATGATGATCCTGGCAAACTGGCACATAGAAAGCATCAAATTACTTGGCTAGCTCATCAGGCTCAAGAAAATGAAATGGAATTGGAAAAACGTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4928#0 TTCACAATATAGATCAAAGTCTACAGATGATGATCCTGGCAAACTGGCACATAGAAAGCA 60
consensus_4928#1 ------------------------------------------------------------
consensus_4928#0 TCAAATTACTTGGCTAGCTCATCAGGTATAATTCTTTTTCGTTTAACAGAATTATTTTGT 120
consensus_4928#1 ----------------------------TGAAAACTCAACTACTAATCGACTCACTGCA- 31
* * * * *** ** * * *
consensus_4928#0 ATGTTGTTACTTGGCTATTTGTCATATATTTTGGTGAGATTGTTAGTTACCAATTTTGTA 180
consensus_4928#1 AAATCATGGGAAGAATGTTTACCAAAGGTTACTATAAA----TGATCCGGAAATTCTACG 87
* * * * * *** ** * ** * * * * **** *
consensus_4928#0 GTTATTATGTACGTTTGTTTTGACAAAGACCGTGAATTGTTCGGAGTGTGTTGGCTGGCT 240
consensus_4928#1 CCAAATGT---CTTCTGTTCAAAAAGAAATCACTGAACAAGAAAAAGAAGATGACAAGGA 144
* * * * * **** * * * * * * * * ** * *
consensus_4928#0 TCATGCTAGTTGCCA---CTTACCAACA-ACGGATACTTTGAAGGAACTATATTTCCCAT 296
consensus_4928#1 GGATGTTGAAGAAAAAGTCTTTTGGACAGAAGAAAATTTCGTTCCAGGTCCAGAGCGTA- 203
*** * * *** *** * * * * ** * * * * * *
consensus_4928#0 GAAATTTCGAACTTGCTTCATCTAGTGTCAA--TCAGCAATGTTGCTAAAAAACTGGGCA 354
consensus_4928#1 AACGTGCACGTCTTGTTATGCCTGGTACAAAATCTAATCATATTGCTGTAAA-TGAATTA 262
* * **** * ** ** ** * ** ***** *** *
consensus_4928#0 TCGAAAGTAGTACGTACGATACAAAATAAAATTTGTTTATTGCTTGGGGCACTGTGTAGG 414
consensus_4928#1 TTACAATCAACAAATACAG----AAGTAATATCAATCAATCAATCTGATTTAACAGCTGG 318
* ** * * *** ** *** ** * ** * * * **
consensus_4928#0 CGAGGCACGTGGTTTTTTTAAGGTGCCTTTTCTCAGATCTTAATCCATATAGTAGTGAAA 474
consensus_4928#1 TGCTCAATTAGAATTAATTAAA----TCTGTTACAAGTGATGATTCACAATATAG---AT 371
* * * ** **** * * ** * * ** ** * *** *
consensus_4928#0 CAAAGTCAGGAGATGCAGTACCATGATCGCCGGTGACCAAAATGGTTTCATATGCC-ACT 533
consensus_4928#1 CAAAGTCTACAGATGATGATCCTGGCAAACTGGCACATAGAAAGCATCAAATTACTTGGC 431
******* ***** * ** * * ** * ** * * * * *
consensus_4928#0 CGTTTCATCAGGATCATAGAATTAAAGTTCTCCGAATCCCCTTGGTAGACTCTCCTTATC 593
consensus_4928#1 TAGCTCATCAGGCTCAAGAAAATGAAAT----GGAAT----TGGAAAAACGTT------- 476
******** *** ** * ** * **** * * * ** *
consensus_4928#0 CACCAACGTGGTTTAAACACT 614
consensus_4928#1 ---------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||