cluster # 4935

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Schistosoma mansoni
cluster # 4935 cluster # 4935 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4935#0 length = 227 sequences # 2

consensus_4935#1 length = 226 sequences # 1

consensusID : consensus_4935#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 227
fasta sequence

                              [TAACCAAAGACATAATCACTTATACATTCTGTAAATGATACCTACATACTGAACTGCGATGGATAAGTATACAACTGATCAGTTTTACTCGTCGGTCAGTTTTCCTTTTTCATTGTTTTAATCAGCTATCCTCGAAGTGATCTACAACTACACCTAGACCTTCCCCATCAATTTATTTGGTGGTCATTTACTCACATAAGTCATGATTTGATTATTTTCATGNCTTT]

[+] EMBL CD199242             [TAACCAAAGACATAATCACTTATACATTCTGTAAATGATACCTACATACTGAACTGCGATGGATAAGTATACAACTGATCAGTTTTACTCGTCGGTCAGTTTTCCTTTTTCATTGTTTTAATCAGCTATCCTCGAAGTGATCTACAACTACACCTAGACCTTCCCCATCAATTTATTTGGTGGTCATTTACTCACATAAGTCATGATTTGATTATTTTCATGNCTT ]
[+] EMBL CD070573             [TAACCTGAGACATAATCACTTATACATTCTGTAAATGATACCTACATACTGAACTGCGATGGATAAGTATACTACTGATCAGTTTTACTCGTCGGGCAGCTTTCCTTTTTCATTGTATTAATCAGCTATCCTCGTAGTGATCTACAACTACACCTAGACCTTCCCCATCAATTTATTTGGTGGTCATTTACTCACATAAGTCATGATTCGACTATTTTCATG CTTT]




>consensus_4935#0
TAACCAAAGACATAATCACTTATACATTCTGTAAATGATACCTACATACTGAACTGCGAT
GGATAAGTATACAACTGATCAGTTTTACTCGTCGGTCAGTTTTCCTTTTTCATTGTTTTA
ATCAGCTATCCTCGAAGTGATCTACAACTACACCTAGACCTTCCCCATCAATTTATTTGG
TGGTCATTTACTCACATAAGTCATGATTTGATTATTTTCATGNCTTT

consensusID : consensus_4935#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 226
fasta sequence

                              [TAACCAAAGACATAATCACTTATACATTCTGTAGATGATACCTACATACTGAACTGCGATGGATAAGTATACGACTGATCAGTTTTACTCGTCGGCCAGTTTTCCTTTTTCATTGCTTTAATCAGCTATCCTCGAAGTGATCTACAACTACACCTAGACCTTCGCCATCAATTTATTTGTGGGTCATTTACTCACATGAGACATGACTTGACTATTTTCATGCTTG]

[+] EMBL CD199316             [TAACCAAAGACATAATCACTTATACATTCTGTAGATGATACCTACATACTGAACTGCGATGGATAAGTATACGACTGATCAGTTTTACTCGTCGGCCAGTTTTCCTTTTTCATTGCTTTAATCAGCTATCCTCGAAGTGATCTACAACTACACCTAGACCTTCGCCATCAATTTATTTGTGGGTCATTTACTCACATGAGACATGACTTGACTATTTTCATGCTTG]




>consensus_4935#1
TAACCAAAGACATAATCACTTATACATTCTGTAGATGATACCTACATACTGAACTGCGAT
GGATAAGTATACGACTGATCAGTTTTACTCGTCGGCCAGTTTTCCTTTTTCATTGCTTTA
ATCAGCTATCCTCGAAGTGATCTACAACTACACCTAGACCTTCGCCATCAATTTATTTGT
GGGTCATTTACTCACATGAGACATGACTTGACTATTTTCATGCTTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4935#0      TAACCAAAGACATAATCACTTATACATTCTGTAAATGATACCTACATACTGAACTGCGAT 60
consensus_4935#1      TAACCAAAGACATAATCACTTATACATTCTGTAGATGATACCTACATACTGAACTGCGAT 60
                      ********************************* **************************

consensus_4935#0      GGATAAGTATACAACTGATCAGTTTTACTCGTCGGTCAGTTTTCCTTTTTCATTGTTTTA 120
consensus_4935#1      GGATAAGTATACGACTGATCAGTTTTACTCGTCGGCCAGTTTTCCTTTTTCATTGCTTTA 120
                      ************ ********************** ******************* ****

consensus_4935#0      ATCAGCTATCCTCGAAGTGATCTACAACTACACCTAGACCTTCCCCATCAATTTATTTGG 180
consensus_4935#1      ATCAGCTATCCTCGAAGTGATCTACAACTACACCTAGACCTTCGCCATCAATTTATTTGT 180
                      ******************************************* *************** 

consensus_4935#0      TGGTCATTTACTCACATAAGTCATGATTTGATTATTTTCATGNCTTT 227
consensus_4935#1      GGGTCATTTACTCACATGAGACATGACTTGACTATTTTCATGCTTG- 226
                       **************** ** ***** **** **********  *