These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4935#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 227 fasta sequence [TAACCAAAGACATAATCACTTATACATTCTGTAAATGATACCTACATACTGAACTGCGATGGATAAGTATACAACTGATCAGTTTTACTCGTCGGTCAGTTTTCCTTTTTCATTGTTTTAATCAGCTATCCTCGAAGTGATCTACAACTACACCTAGACCTTCCCCATCAATTTATTTGGTGGTCATTTACTCACATAAGTCATGATTTGATTATTTTCATGNCTTT] [+] EMBL CD199242 [TAACCAAAGACATAATCACTTATACATTCTGTAAATGATACCTACATACTGAACTGCGATGGATAAGTATACAACTGATCAGTTTTACTCGTCGGTCAGTTTTCCTTTTTCATTGTTTTAATCAGCTATCCTCGAAGTGATCTACAACTACACCTAGACCTTCCCCATCAATTTATTTGGTGGTCATTTACTCACATAAGTCATGATTTGATTATTTTCATGNCTT ] [+] EMBL CD070573 [TAACCTGAGACATAATCACTTATACATTCTGTAAATGATACCTACATACTGAACTGCGATGGATAAGTATACTACTGATCAGTTTTACTCGTCGGGCAGCTTTCCTTTTTCATTGTATTAATCAGCTATCCTCGTAGTGATCTACAACTACACCTAGACCTTCCCCATCAATTTATTTGGTGGTCATTTACTCACATAAGTCATGATTCGACTATTTTCATG CTTT] consensusID : consensus_4935#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 226 fasta sequence [TAACCAAAGACATAATCACTTATACATTCTGTAGATGATACCTACATACTGAACTGCGATGGATAAGTATACGACTGATCAGTTTTACTCGTCGGCCAGTTTTCCTTTTTCATTGCTTTAATCAGCTATCCTCGAAGTGATCTACAACTACACCTAGACCTTCGCCATCAATTTATTTGTGGGTCATTTACTCACATGAGACATGACTTGACTATTTTCATGCTTG] [+] EMBL CD199316 [TAACCAAAGACATAATCACTTATACATTCTGTAGATGATACCTACATACTGAACTGCGATGGATAAGTATACGACTGATCAGTTTTACTCGTCGGCCAGTTTTCCTTTTTCATTGCTTTAATCAGCTATCCTCGAAGTGATCTACAACTACACCTAGACCTTCGCCATCAATTTATTTGTGGGTCATTTACTCACATGAGACATGACTTGACTATTTTCATGCTTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4935#0 TAACCAAAGACATAATCACTTATACATTCTGTAAATGATACCTACATACTGAACTGCGAT 60 consensus_4935#1 TAACCAAAGACATAATCACTTATACATTCTGTAGATGATACCTACATACTGAACTGCGAT 60 ********************************* ************************** consensus_4935#0 GGATAAGTATACAACTGATCAGTTTTACTCGTCGGTCAGTTTTCCTTTTTCATTGTTTTA 120 consensus_4935#1 GGATAAGTATACGACTGATCAGTTTTACTCGTCGGCCAGTTTTCCTTTTTCATTGCTTTA 120 ************ ********************** ******************* **** consensus_4935#0 ATCAGCTATCCTCGAAGTGATCTACAACTACACCTAGACCTTCCCCATCAATTTATTTGG 180 consensus_4935#1 ATCAGCTATCCTCGAAGTGATCTACAACTACACCTAGACCTTCGCCATCAATTTATTTGT 180 ******************************************* *************** consensus_4935#0 TGGTCATTTACTCACATAAGTCATGATTTGATTATTTTCATGNCTTT 227 consensus_4935#1 GGGTCATTTACTCACATGAGACATGACTTGACTATTTTCATGCTTG- 226 **************** ** ***** **** ********** * |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||