These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4940#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 616 fasta sequence [CAGAGGAACCTTTAAAAAGCAAAATGAAAAAATCAGCTAATACAATTGATGTGTCGGATAGTGTTGACTCACTTCCTAATGCTGATAAATCTTTGTCATCTGGACAATTCCCGAACGGGATTAATGAGAAACTTTTAAAGCAACTCACTAACGTCATGTTGGTCTCTGGATCTGGTAGTTCTAGTGGTGGGACAGAAAAGAAGTCTAAGAGTGATTATCGATTCTGGAGAACACAGCCAGTTCCTGACCTCACTGAAGAGATTACTGACAATGGTCCAATTGAACCAGATTCAAAACATGAAGATATTCGCTCACAGCCTTATACATTACCTGAGGGATTTTATTGGTGTGAAGTTTCTTTGGATGATGAAACTGAGCTACAAGAATTGTATGATCTTCTGTATGAAAATTATGTTGAAGACGATGATCATCTCTTCCGATTTGATTATTCTAAACATTTCTTACAATGGATCCTAAAGTCACCTGGTTGGCATAAAGATTGGCATGTTGGACTTCGTGTAACTAAAAGTAAAAAGCTGGTTGGATTTATTGCAGCTATTCCATGCCATCTACAGATATATGATAAAGCAAAACAGCTTGTTGAAGTCAACTATCT] [+] EMBL CD147695 [CAGAGGAACCTTTAAAAAGCAAAATGAAAAAATCAGCTAATACAATTGATGTGTCGGATAGTGTTGACTCACTTCCTAATGCTGATAAATCTTTGTCATCTGGACAATTCCCGAACGGGATTAATGAGAAACTTTTAAAGCAACTCACTAACGTCATGTTGGTCTCTGGATCTGGTAGTTCTAGTGGTGGGACAGAAAAGAAGTCTAAGAGTGATTATCGATTCTGGAGAACAC ] [+] EMBL AW017038 [ TAAATCTTTGTCATCTGGACAATTCCCGAACGGGATTAATGAGAAACTTTTAAAGCAACTCACTAACGTCATGTTGGTCTCTGGATCTGGTAGTTCTAGTGGTGGGACAGAAAAGAAGTCTAAGAGTGATTATCGATTCTGGAGAACACAGCCAGTTCCTGACCTCACTGAAGAGATTACTGACAATGGTCCAATTGAACCAGATTCAAAACATGAAGATATTCGCTCACAGCCTTATACATTACCTGAGGGATTTTATTGGTGTGAAGTTTCTTTGGATGATGAAACTGAGCTACAAGAATTGTATGATCTTCTGTATGAAAATTATGTTGAAGACGATGATCATCTCTTCCGATTTGATTATTCTAAACATTTCTTACAATGGATCCTAAAGTCACCTGGTTGGCATAAAGATTGGCATGTTGGACTTCGTGTAACTAAAAGTAAAAAGCTGGTTGGATTTATTGCAGCTATTCCATGCCATCTACAGATATATGATAAAGCAAAACAGCTTGTTGAAGTCAACTATCT] consensusID : consensus_4940#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 509 fasta sequence [CAGTTCCTGACCTCACTGAAGAGATTACTGACAATGGTCCAATTGAACCAGATTCAAAACATAAAGATATTCGCTCACAGCCTTATACATTACCTGAGGGATTTTATTGGTGTGAAGTTTCTTTGGATGATGAAACTGAGCTACAAGAATTGTATGATCTTCTGTATGAAAATTATGTTGAAGACGATGATCATCTCTTCCGATTTGATTATTCTAAACATTTCTTACAATGCCGATCATTATACTGGCTGATGCTTGATTGACGGAGGAAATTGAACTACCCCTTCTTGTTACATATTTCTGCTAAGATCCTAAAGTCACCTGGTTGGCATAAAGATTGGCATGTTGGACTTCGTGTAACTAAAAGTAAAAAGCTGGTTGGATTTATTGCAGCTATTCCATGCCATCTACAGATATATGATAAAGCANAACAGCTTGTTGAAGTCAACTATCTTTGTGTCCATAAAAAATTACGTTCTAAACGTATGGCCCCTGTATTAATTCGAGAA] [+] EMBL CD200483 [CAGTTCCTGACCTCACTGAAGAGATTACTGACAATGGTCCAATTGAACCAGATTCAAAACATAAAGATATTCGCTCACAGCCTTATACATTACCTGAGGGATTTTATTGGTGTGAAGTTTCTTTGGATGATGAAACTGAGCTACAAGAATTGTATGATCTTCTGTATGAAAATTATGTTGAAGACGATGATCATCTCTTCCGATTTGATTATTCTAAACATTTCTTACAATGCCGATCATTATACTGGCTGATGCTTGATTGACGGAGGAAATTGAACTACCCCTTCTTGTTACATATTTCTGCTAAGATCCTAAAGTCACCTGGTTGGCATAAAGATTGGCATGTTGGACTTCGTGTAACTAAAAGTAAAAAGCTGGTTGGATTTATTGCAGCTATTCCATGCCATCTACAGATATATGATAAAGCANAACAGCTTGTTGAAGTCAACTATCTTTGTGTCCATAAAAAATTACGTTCTAAACGTATGGCCCCTGTATTAATTCGAGAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4940#0 CAGAGGAACCTTTAAAAAGCAAAATGAAAAAATCAGCTAATACAATTGATGTGTCGGATA 60 consensus_4940#1 ------------------------------------------------------------ consensus_4940#0 GTGTTGACTCACTTCCTAATGCTGATAAATCTTTGTCATCTGGACAATTCCCGAACGGGA 120 consensus_4940#1 ------------------------------------------------------------ consensus_4940#0 TTAATGAGAAACTTTTAAAGCAACTCACTAACGTCATGTTGGTCTCTGGATCTGGTAGTT 180 consensus_4940#1 ------------------------------------------------------------ consensus_4940#0 CTAGTGGTGGGACAGAAAAGAAGTCTAAGAGTGATTATCGATTCTGGAGAACACAGCCAG 240 consensus_4940#1 ---------------------------------------------------------CAG 3 *** consensus_4940#0 TTCCTGACCTCACTGAAGAGATTACTGACAATGGTCCAATTGAACCAGATTCAAAACATG 300 consensus_4940#1 TTCCTGACCTCACTGAAGAGATTACTGACAATGGTCCAATTGAACCAGATTCAAAACATA 63 *********************************************************** consensus_4940#0 AAGATATTCGCTCACAGCCTTATACATTACCTGAGGGATTTTATTGGTGTGAAGTTTCTT 360 consensus_4940#1 AAGATATTCGCTCACAGCCTTATACATTACCTGAGGGATTTTATTGGTGTGAAGTTTCTT 123 ************************************************************ consensus_4940#0 TGGATGATGAAACTGAGCTACAAGAATTGTATGATCTTCTGTATGAAAATTATGTTGAAG 420 consensus_4940#1 TGGATGATGAAACTGAGCTACAAGAATTGTATGATCTTCTGTATGAAAATTATGTTGAAG 183 ************************************************************ consensus_4940#0 ACGATGATCATCTCTTCCGATTTGATTATTCTAAACATTTCTTACAATG----------- 469 consensus_4940#1 ACGATGATCATCTCTTCCGATTTGATTATTCTAAACATTTCTTACAATGCCGATCATTAT 243 ************************************************* consensus_4940#0 ------------------------------------------------------------ consensus_4940#1 ACTGGCTGATGCTTGATTGACGGAGGAAATTGAACTACCCCTTCTTGTTACATATTTCTG 303 consensus_4940#0 ----GATCCTAAAGTCACCTGGTTGGCATAAAGATTGGCATGTTGGACTTCGTGTAACTA 525 consensus_4940#1 CTAAGATCCTAAAGTCACCTGGTTGGCATAAAGATTGGCATGTTGGACTTCGTGTAACTA 363 ******************************************************** consensus_4940#0 AAAGTAAAAAGCTGGTTGGATTTATTGCAGCTATTCCATGCCATCTACAGATATATGATA 585 consensus_4940#1 AAAGTAAAAAGCTGGTTGGATTTATTGCAGCTATTCCATGCCATCTACAGATATATGATA 423 ************************************************************ consensus_4940#0 AAGCAAAACAGCTTGTTGAAGTCAACTATCT----------------------------- 616 consensus_4940#1 AAGCANAACAGCTTGTTGAAGTCAACTATCTTTGTGTCCATAAAAAATTACGTTCTAAAC 483 ***** ************************* consensus_4940#0 -------------------------- consensus_4940#1 GTATGGCCCCTGTATTAATTCGAGAA 509 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||