These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4943#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 749 fasta sequence [GCTACTTAGCTGCCCAACAATATGCTGACGCTCAGGCTTTCCTAGCTAAATACGATGATATCAACTATCCGAAATCAGCTACTATATGTTACACTGCAGCTTTGCTTAAAGCCAGACAAGTATCTGAAAAATTTTCTCCGGACTTAGCGTCACGTAGGGGTTTGAATGCAGCTGAACTGAGTGCTGTTGAAGCTATTCATCGGGCTGTTGAATTTAATCCACATGTGCCAAAATATCTTCTTGAAATGAAACCTCTAATATTGCCTACAGAGCACATTTTAAAACGTGGCGATTCTGAAGCCATTGCCTATGCATTTTTTCATTTAGCTCATTGGAAGGCTGTAGAAGGTGCAATTAATTTATTATATTGTACATGGGAGGGAACTTTTCGACTCATTCCATATCCTCTAGAAAAAGGAAACCTCTTTTATCCATATCCCCATTCAACTACAGCAACTGATCGAGAACTTTTACCAAGTTTTCATACACTATCTGTGTATCCGAAAAAAGATGTGCCATTTTTTATTCTATTTATTGCAACTCTATGCTCTTTAACAGCTATACTTACATGTTTAACTCATGTTTATCCTGAACAAATGGGATCACTTTCTAGTAAGACTCTCAACTGGTTTTTCAGTCCAATCAATTATCTATTGGAAAAACTAGAAGGATTACTACTTTTGCTAGCTCCAACGTCTGCTCGAAAGCTTTTAACTTAAACAACTTAATAATAATTCACGTTCAAAAAA] [+] EMBL CD078488 [GCTACTTAGCTGCCCAACAATATGCTGACGCTCAGGCTTTCCTAGCTAAATACGATGATATCAACTATCCGAAATCAGCTACTATATGTTACACTGCAGCTTTGCTTAAAGCCAGACAAGTATCTGAAAAATTTTCTCCGGACTTAGCGTCACGTAGGGGTTTGAATGCAGCTGAACTGAGTGCTGTTGAAGCTATTCATCGGGCTGTTGAATTTAATCCACATGTGCCAAAATATCTTCTTGAAATGAAACCTCTAATATTGCCTACAGAGCACATTTTAAAACGTGGCGATTCTGAAGCCATTGCCTATGCATTTTTTCATTTAGCTCATTGGAAGGCTGTAGAAGGTGCAATTAATTTATTATATTGTACATGGGAGGGAACTTTTCGACTCATTCCATATCCTCTAGAAAAAGGAAACCTCTTTTATCCATATCCCCATTCAACTACAGCAACTGATCGAGAACTTTTACCAAGTTTTCATACACTATCTGTGTATCCGAAAAAAGATGTGCCATTTTTTATTCTATTTATTGCAACTCTATGCTCTTTAACAGCTATACTTACATGTTTAACTCATGTTTATCCTGAAC ] [+] EMBL CD178672 [ gatgGAAGGTGCAATTAATTTATTATATTGTACATGGGAGGGAACTTTTCGACTCATTCCATATCCTCTAGAAAAAGGAAACCTCTTTTATCCATATCCCCATTCAACTACAGCAACTGATCGAGAACTTTTACCAAGTTTTCATACACTATCTGTGTATCCGAAAAAAGATGTGCCATTTTTTATTCTATTTATTGCAACTCTATGCTCTTTAACAGCTATACTTACATGTTTAACTCATGTTTATCCTGAACAAATGGGATCACTTTCTAGTAAGACTCTCAACTGGTTTTTCAGTCCAATCAATTATCTATTGGAAAAACTAGAAGGATTACTACTTTTGCTAGCTCCAACGTCTGCTCGAAAGCTTTTAACTTAAACAACTTAATAATAATTCACGTTCAAAAAA] consensusID : consensus_4943#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 212 fasta sequence [CGGCCAGAATTCGGTCCGAGGCTTGAAATGAAACCTCTAATATTGCCTACAGAGCACATTTTAAAACGTGGCGATTCTGAAGCCATTGCCTATGCATTTTTTCATTTAGCTCATTGGAAGGCTGTAGAAGGTGCAATTAATTTATTATATTGTACATGGGAGGGAACTTTTCGACTCATTTCCATATCCTCTAGAAAAAGGAAACCNTTTTT] [+] EMBL CD078216 [CGGCCAGAATTCGGTCCGAGGCTTGAAATGAAACCTCTAATATTGCCTACAGAGCACATTTTAAAACGTGGCGATTCTGAAGCCATTGCCTATGCATTTTTTCATTTAGCTCATTGGAAGGCTGTAGAAGGTGCAATTAATTTATTATATTGTACATGGGAGGGAACTTTTCGACTCATTTCCATATCCTCTAGAAAAAGGAAACCNTTTTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4943#0 GCTACTTAGCTGCCCAACAATATGCTGACGCTCAGGCTTTCCTAGCTAAATACGATGATA 60 consensus_4943#1 ------------------------------------------------------------ consensus_4943#0 TCAACTATCCGAAATCAGCTACTATATGTTACACTGCAGCTTTGCTTAAAGCCAGACAAG 120 consensus_4943#1 ------------------------------------------------------------ consensus_4943#0 TATCTGAAAAATTTTCTCCGGACTTAGCGTCACGTAGGGGTTTGAATGCAGCTGAACTGA 180 consensus_4943#1 ------------------------------------------------------------ consensus_4943#0 GTGCTGTTGAAGCTATTCATCGGGCTGTTGAATTTAATCCACATGTGCCAAAATATCTTC 240 consensus_4943#1 ----------------------------------CGGCCAGAATTCGGTCCGAGG----C 22 * ** * * * consensus_4943#0 TTGAAATGAAACCTCTAATATTGCCTACAGAGCACATTTTAAAACGTGGCGATTCTGAAG 300 consensus_4943#1 TTGAAATGAAACCTCTAATATTGCCTACAGAGCACATTTTAAAACGTGGCGATTCTGAAG 82 ************************************************************ consensus_4943#0 CCATTGCCTATGCATTTTTTCATTTAGCTCATTGGAAGGCTGTAGAAGGTGCAATTAATT 360 consensus_4943#1 CCATTGCCTATGCATTTTTTCATTTAGCTCATTGGAAGGCTGTAGAAGGTGCAATTAATT 142 ************************************************************ consensus_4943#0 TATTATATTGTACATGGGAGGGAACTTTTCGACTCATT-CCATATCCTCTAGAAAAAGGA 419 consensus_4943#1 TATTATATTGTACATGGGAGGGAACTTTTCGACTCATTTCCATATCCTCTAGAAAAAGGA 202 ************************************** ********************* consensus_4943#0 AACCTCTTTTATCCATATCCCCATTCAACTACAGCAACTGATCGAGAACTTTTACCAAGT 479 consensus_4943#1 AACCNTTTTT-------------------------------------------------- 212 **** **** consensus_4943#0 TTTCATACACTATCTGTGTATCCGAAAAAAGATGTGCCATTTTTTATTCTATTTATTGCA 539 consensus_4943#1 ------------------------------------------------------------ consensus_4943#0 ACTCTATGCTCTTTAACAGCTATACTTACATGTTTAACTCATGTTTATCCTGAACAAATG 599 consensus_4943#1 ------------------------------------------------------------ consensus_4943#0 GGATCACTTTCTAGTAAGACTCTCAACTGGTTTTTCAGTCCAATCAATTATCTATTGGAA 659 consensus_4943#1 ------------------------------------------------------------ consensus_4943#0 AAACTAGAAGGATTACTACTTTTGCTAGCTCCAACGTCTGCTCGAAAGCTTTTAACTTAA 719 consensus_4943#1 ------------------------------------------------------------ consensus_4943#0 ACAACTTAATAATAATTCACGTTCAAAAAA 749 consensus_4943#1 ------------------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||