|
These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4970#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 810 fasta sequence
[CCTGCGGCCCAAATGTTACCATCAAATAAATATTCTTCAAGTAATATTTTACCTCATATTCAGTCTCAGGTCCTTCCTGGATCACTGACAACAAACTGTTTACTTCCTGGAACAGCGAATTCTGCATTATCTCAAGCTAATTCAATACATTCCATTCCGAATGATCAATTGTCTCATTCTATCCCATCTCTTAGCTCAGCGAATTTATCTACGTATTTACCAAATAATAATACATCCGGACTTTTATATCCTTTGACGGCAAATGCAGCTTTATCTGCAGCCGTCAGTACAGGATCAGCTACAAATAATGGACAACTTAATCTAACTCTTCCTTTAAGCCAAATCGCTGGCGGTATTACTGGGAATGGACTCTCTGGTTTATCCTTGCCAATTGGTTCTACGTTGCATGCAGCCAGCCATGACCAGTTAGCTGCT-GTTGCAGCTGCTCTCCTTAGAGGAAGTGGAGCATGAGGTATTGGTGCAAGCAATCCAAATCTACCGGTATGCAATGGTAACGCGAATAATCCTGTATGTAATATAAACTCAGGTGCTCA-TAGTTACCCTATCACTTCACATACATCACTCTGCACATGCTGTAAATATTTCTGGAATTCAACAGCGCCATCGAATACACAAGACACTGGTTCAGGACCACTTAAATTACGTTCCCTTGCAAGCCACGATATCCAACAGTTTCTAGAATGCCTTCATACCCTGAGCCAGTAATCAATGAATGACGTCACCGCTTGCAAATACACATAATTTGCTTGTATCCATGACAACTCGCGCTGTTTATTATTGGGATTTTAA]
[+] EMBL CD160422 [CCTGCGGCCCAAATGTTACCATCAAATAAATATTCTTCAAGTAATATTTTACCTCATATTCAGTCTCAGGTCCTTCCTGGATCACTGACAACAAACTGTTTACTTCCTGGAACAGCGAATTCTGCATTATCTCAAGCTAATTCAATACATTCCATTCCGAATGATCAATTGTCTCATTCTATCCCATCTCTTAGCTCAGCGAATTTATCTACGTATTTACCAAATAATAATACATCCGGACTTTTATATCCTTTGACGGCAAATGCAGCTTTATCTGCAGCCGTCAGTACAGGATCAGCTACAAATAATGGACAACTTAATCTAACTCTTCCTTTAAGCCAAATCGCTGGCGGTATTACTGGGAATGGACTCTCTGGTTTATCCTTGCCAATTGGTTCTACGTTGCATGCAGCCAGCCATGACCAGTTAGCTGCT GTTGCAGCTGCTCTCCTTAGAGGAAGTGGAGCATGAGGTATTGGTGCAAGCAATCCAAATCTACCGGTATGCAATGGTAACGCGAATAATCCTGTATGTAATATAAACTCAGGTGCTCA TAGTTACCCTATCACTTCACATACATCACTCTGCACATGCTGTAAATATTTCTGGAATTCAACAGCGCCATCGAATACACAAGACACTGGTTCAGGACCACTTAAATTACGTTCCCTTGCAAGCCACGATATCCAACAGTTTCTAGAATGCCTTCATACCCTGAGCCAGTAATCAATGAATGACGTCACCGCTTGCAAATACACATAATTTGCTTGTATCCATGACAACTCGCGCTGTTTATTATTGGGATTTTAA]
[-] EMBL CD194410 [ TAATAATACATCCGGACTTTTATATCCTTTGACGGCAAATGCAGCTTTATCTGCAGCCGTCAGTACAGGATCAGCTACAAATAATGGACAACTTAATCTAACTCTTCCTTTAAGCCAAATCGCTGGCAGTATTACTGGGAATGGACTTTCTGGTTTATCCTTGCCAATTGGTTCTACGTTGCATGCAGCCAGCCATGACCAGTTAGCTGCTCGTTGCAGCTGCTCTCCTTAGTGGAAGTGGAGCAGGAGGTATTGGTGCAAGCAATTCCAATTTGCAGTTATGCAATGGTAACGTGAATAATCCTGTATTTAATATAATCTCAGGTGATGATTAGTTTCCGTATCACTT ]
consensusID : consensus_4970#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 622 fasta sequence
[TACCTTTGAGAGATGAGGATTTACACCAACAATATATAAATGGACATGTGATAAGGTGTTCTCACAGTCCGATCGATAATTCAGACATAGCGTCCAATCATAAAGATCGTCAGCAAGCACATATTCAACAAGTTCAACAACATCAACAGCTCATATTACAACATCAGTCACTTACTGTATTAAATCATCAAGCGGCTGCAGCAGCGGCAGCTGCAGCAGCTGCAGCCCAAATATTACCATCAAATAAATATTCTTCAAGTAATATTTTACCTCAGATTCAGTCTCAGGTACTTCCTGGATCACTGACAACAAACTGTTTACTTCCTGGAACAGTGAATTCTGCATTATCTCAAGCTAATTCAATACATTCCATTCCGAATGATCAATTGTCTCATTCTATCCCATCTCTTAGCTCAGCGAATTTATCTACGTATTTACCAAATAATAATATATCCGGACTTTTATATCCTTTGACGGCAAATGCAGCTTTATCTGCAGCCGTCAGTACAGGATCAGCTACAAATAATGGACAACTTAATCTAACTCTTCCTTTAAGCCAAATCGCTGGCGGTATTACTGGGAATGGACTTTCCTGATTTTCCACCCTTGCNCAGGGTACCGA]
[-] EMBL CD168049 [TACCTTTGAGAGATGAGGATTTACACCAACAATATATAAATGGACATGTGATAAGGTGTTCTCACAGTCCGATCGATAATTCAGACATAGCGTCCAATCATAAAGATCGTCAGCAAGCACATATTCAACAAGTTCAACAACATCAACAGCTCATATTACAACATCAGTCACTTACTGTATTAAATCATCAAGCGGCTGCAGCAGCGGCAGCTGCAGCAGCTGCAGCCCAAATATTACCATCAAATAAATATTCTTCAAGTAATATTTTACCTCAGATTCAGTCTCAGGTACTTCCTGGATCACTGACAACAAACTGTTTACTTCCTGGAACAGTGAATTCTGCATTATCTCAAGCTAATTCAATACATTCCATTCCGAATGATCAATTGTCTCATTCTATCCCATCTCTTAGCTCAGCGAATTTATCTACGTATTTACCAAATAATAATATATCCGGACTTTTATATCCTTTGACGGCAAATGCAGCTTTATCTGCAGCCGTCAGTACAGGATCAGCTACAAATAATGGACAACTTAATCTAACTCTTCCTTTAAGCCAAATCGCTGGCGGTATTACTGGGAATGGACTTTCCTGATTTTCCACCCTTGCNCAGGGTACCGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4970#0 ------------------------------------------------------------
consensus_4970#1 TACCTTTGAGAGATGAGGATTTACACCAACAATATATAAATGGACATGTGATAAGGTGTT 60
consensus_4970#0 ------------------------------------------------------------
consensus_4970#1 CTCACAGTCCGATCGATAATTCAGACATAGCGTCCAATCATAAAGATCGTCAGCAAGCAC 120
consensus_4970#0 ------------------------------------------------------------
consensus_4970#1 ATATTCAACAAGTTCAACAACATCAACAGCTCATATTACAACATCAGTCACTTACTGTAT 180
consensus_4970#0 --------------------------------------CCTGCGGCCCAAATGTTACCAT 22
consensus_4970#1 TAAATCATCAAGCGGCTGCAGCAGCGGCAGCTGCAGCAGCTGCAGCCCAAATATTACCAT 240
**** ******** *******
consensus_4970#0 CAAATAAATATTCTTCAAGTAATATTTTACCTCATATTCAGTCTCAGGTCCTTCCTGGAT 82
consensus_4970#1 CAAATAAATATTCTTCAAGTAATATTTTACCTCAGATTCAGTCTCAGGTACTTCCTGGAT 300
********************************** ************** **********
consensus_4970#0 CACTGACAACAAACTGTTTACTTCCTGGAACAGCGAATTCTGCATTATCTCAAGCTAATT 142
consensus_4970#1 CACTGACAACAAACTGTTTACTTCCTGGAACAGTGAATTCTGCATTATCTCAAGCTAATT 360
********************************* **************************
consensus_4970#0 CAATACATTCCATTCCGAATGATCAATTGTCTCATTCTATCCCATCTCTTAGCTCAGCGA 202
consensus_4970#1 CAATACATTCCATTCCGAATGATCAATTGTCTCATTCTATCCCATCTCTTAGCTCAGCGA 420
************************************************************
consensus_4970#0 ATTTATCTACGTATTTACCAAATAATAATACATCCGGACTTTTATATCCTTTGACGGCAA 262
consensus_4970#1 ATTTATCTACGTATTTACCAAATAATAATATATCCGGACTTTTATATCCTTTGACGGCAA 480
****************************** *****************************
consensus_4970#0 ATGCAGCTTTATCTGCAGCCGTCAGTACAGGATCAGCTACAAATAATGGACAACTTAATC 322
consensus_4970#1 ATGCAGCTTTATCTGCAGCCGTCAGTACAGGATCAGCTACAAATAATGGACAACTTAATC 540
************************************************************
consensus_4970#0 TAACTCTTCCTTTAAGCCAAATCGCTGGCGGTATTACTGGGAATGGACTCTCTGGTTTAT 382
consensus_4970#1 TAACTCTTCCTTTAAGCCAAATCGCTGGCGGTATTACTGGGAATGGACTTTCCTGATTTT 600
************************************************* ** * ** *
consensus_4970#0 CCTTGCCAATTGGTTCTACGTTGCATGCAGCCAGCCATGACCAGTTAGCTGCTGTTGCAG 442
consensus_4970#1 CCACCCTTGCNCAGGGTACCGA-------------------------------------- 622
** * ***
consensus_4970#0 CTGCTCTCCTTAGAGGAAGTGGAGCATGAGGTATTGGTGCAAGCAATCCAAATCTACCGG 502
consensus_4970#1 ------------------------------------------------------------
consensus_4970#0 TATGCAATGGTAACGCGAATAATCCTGTATGTAATATAAACTCAGGTGCTCATAGTTACC 562
consensus_4970#1 ------------------------------------------------------------
consensus_4970#0 CTATCACTTCACATACATCACTCTGCACATGCTGTAAATATTTCTGGAATTCAACAGCGC 622
consensus_4970#1 ------------------------------------------------------------
consensus_4970#0 CATCGAATACACAAGACACTGGTTCAGGACCACTTAAATTACGTTCCCTTGCAAGCCACG 682
consensus_4970#1 ------------------------------------------------------------
consensus_4970#0 ATATCCAACAGTTTCTAGAATGCCTTCATACCCTGAGCCAGTAATCAATGAATGACGTCA 742
consensus_4970#1 ------------------------------------------------------------
consensus_4970#0 CCGCTTGCAAATACACATAATTTGCTTGTATCCATGACAACTCGCGCTGTTTATTATTGG 802
consensus_4970#1 ------------------------------------------------------------
consensus_4970#0 GATTTTAA 810
consensus_4970#1 --------
|
| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||