These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_503#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 643 fasta sequence [ATGATACATACATAGATTAGTGAACGTTGGTTGATTATATTTTGAAGATAACTACTAACCAGTTAATACGAAACATGATTCAATGTTCAGTTTTTACGATATGATAAACATATTATTATTACTATTATTAATTTGCAACGATCAAAAAGCTTTTGAGTATAAAATAGGACGAAAGATAAGAACAATACAAATTAAAATTGTTACAATTTTACGTTACGAAGATGAAAATAAAAGGGTAGACAAGTGTAAACGGATGTTTTTGTAAAACAACAAAACTCATAAAATTACAGATGATACTAAAAAAATATATATGTATATTATATTTTAAATAGAAAAATCAACAGTTTGAGCCAAATATAAATCGAAAACTGTTATTAAAACTAATTATTAAATCATTTACATATTGTTTTAGGTTGATAAGTAGTTGCGGTTAAAAACTACCCCTATTTTAATCACAGTTGTCACCTCTTGAGTACAGAAAGCTTAAATATTTTTGCTCAATGTCAAAATAGATAACAACGTTGTCAATTTAAAGAGAATATAAATCGACAAACCGGCAGAATGGTAAAATCAACTTTGATAAATAAGCAACGATGATATTACTTTTTTTTTCAGAAACACGAGCATACAGTATGAAAATTGA] [+] EMBL CD074845 [ATGATACATACATAGATTAGTGAACGTTGGTTGATTATATTTTGAAGATAACTACTAACCAGTTAATACGAAACATGATTCAATGTTCAGTTTTTACGATATGATAAACATATTATTATTACTATTATTAATTTGCAACGATCAAAAAGCTTTTGAGTATAAAATAGGACGAAAGATAAGAACAATACAAATTAAAATTGTTACAATTTTACGTTACGAAGATGAAAATAAAAGGGTAGACAAGTGTAAACGGATGTTTTTGTAAAACAACAAAACTCATAAAATTACAGATGATACTAAAAAAATATATATGTATATTATATTTTAAATAGAAAAATCAACAGTTTGAGCCAAATATAAATCGAAAACTGTTATTAAAACTAATTATTAAATCATTTACATATTGTTTTAGGTTGATAAGTAGTTGCGGTTAAAAACTACCCCTATTTTAATCACAGTTGTCACCTCTTGAGTACAGAAAGCTTAAATATTTTTGCTCAATGTCAAAATAGATAACAACGTTGTCAATTTAAAGAGAATATAAATCGACAAACCGGCAGAATGGTAAAATCAACTTTGATAAATAAGCAACGATGATATTACTTTTTTTTTCAGAAACACGAGCATACAGTATGAAAATTGA] consensusID : consensus_503#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 613 fasta sequence [ACTAAAAAAATNNNNNNNNNNNNNNNNNNTAAATAGAAAAATCAACAGTNTGAGCCAAATATAAATCGAAAACTGTTATTAAAACTAATTATTAAATCATTTACATATTGTTTTAGGTTGATAAGTAGTTGCGGTTAAAAACTACCCCTATTTTAATCACAGTTGTCACCTCTTGAGTACAGAAAGCTTATAACAACGTTGTCAATTTAAAGAGAATATAAATCGACAAACCGGCAGAATGGTAAAATCAACTTTGATAAATAAGCAACGATGATATTACTTTTTTTTTCAGAAAACACGAGCATACAGTATGAAAATTGNNNNNNNNNNNNNNNCTAGCGAAGCATTTCGACACAATCTCTTTGAAATCTTGCTTAGGATTGGAAAATCCTGAATAACCATTTCTGACTTTAAGCATCAGGTGCATTCGACAGTGATGAAAATGATGGTAATGATGATTGTTCAGCACTGAAGCAACATTGACGACTTTCACTGGCTACCATGCGAAAAAGCAAGATTGCGGCCAGAGCTAACGCAACCATAAGCATAATAATAATGACAGACCAACCATAGGTTTCATGAGACCACATAGTAAAGGTCCAAGTGCAGCACC] [-] EMBL CD081019 [ACTAAAAAAATNNNNNNNNNNNNNNNNNNTAAATAGAAAAATCAACAGTNTGAGCCAAATATAAATCGAAAACTGTTATTAAAACTAATTATTAAATCATTTACATATTGTTTTAGGTTGATAAGTAGTTGCGGTTAAAAACTACCCCTATTTTAATCACAGTTGTCACCTCTTGAGTACAGAAAGCTTATAACAACGTTGTCAATTTAAAGAGAATATAAATCGACAAACCGGCAGAATGGTAAAATCAACTTTGATAAATAAGCAACGATGATATTACTTTTTTTTTCAGAAAACACGAGCATACAGTATGAAAATTGNNNNNNNNNNNNNNNCTAGCGAAGCATTTCGACACAATCTCTTTGAAATCTTGCTTAGGATTGGAAAATCCTGAATAACCATTTCTGACTTTAAGCATCAGGTGCATTCGACAGTGATGAAAATGATGGTAATGATGATTGTTCAGCACTGAAGCAACATTGACGACTTTCACTGGCTACCATGCGAAAAAGCAAGATTGCGGCCAGAGCTAACGCAACCATAAGCATAATAATAATGACAGACCAACCATAGGTTTCATGAGACCACATAGTAAAGGTCCAAGTGCAGCACC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_503#0 ATGATACATACATAGATTAGTGAACGTTGGTTGATTATATTTTGAAGATAACTACTAACC 60 consensus_503#1 --------------------------------------ACTAAAAAAATNNNNNNNNNNN 22 * * ** ** consensus_503#0 AGTTAATACGAAACATGATTCAATGTTCAGTTTTTACGATATGATAAACATATTATTATT 120 consensus_503#1 NNNNNNNTAAATAGAAAAATCAA----CAGTNTGAGCCAAAT-ATAAATCGAAAACTGTT 77 * * * * **** **** * * * ** ***** * * * ** consensus_503#0 ACTATTATTAATTTGCAA--CGATCAAAAAGCTTTTGAGTATAAAATAGGACGAAAGATA 178 consensus_503#1 ATTAAAACTAATTATTAAATCATTTACATATTGTTTTAGGTTGATAAGTAGTTGCGGTTA 137 * ** * ***** ** * * * * * *** ** * * * * ** consensus_503#0 AGAACAATACAAATTAAAATTGTTACAATTTTACGTTACGAAGATGAAA---ATAAAAGG 235 consensus_503#1 AAAACTACCCCTATTTTAATCACAGTTGTCACCTCTTGAGTACAGAAAGCTTATAACAAC 197 * *** * * *** *** * ** * * * ** **** * consensus_503#0 GTAGACAAGTGTAAACGGATGTT--TTTGTAAAACAACAAAACTCATAAAATTACAGATG 293 consensus_503#1 GTTGTCAATTTAAAGAGAATATAAATCGACAAACCGGCAGAA-TGGTAAAATCAACTTTG 256 ** * *** * ** * ** * * *** * ** ** * ****** * ** consensus_503#0 ATACTAAAAAAATATATATGT-ATATTATATTTTAAATAGAAAAATCA-ACAGTTTGAG- 350 consensus_503#1 ATAAATAAGCAACGATGATATTACTTTTTTTTTCAGAAAACACGAGCATACAGTATGAAA 316 *** ** ** ** * * ** * *** * * * * * ** ***** *** consensus_503#0 -CCAAATATAAATCGAAAACTGTTATTAAAACTAATTATTAAATCATTTACATATTGTTT 409 consensus_503#1 ATTGNNNNNNNNNNNNNNNCTAGCGAAGCATTTCGACACAATCTCTTTGAAATCTTGCTT 376 ** * * * * ** ** * ** *** ** consensus_503#0 TAGGTTGATAAGTAGTTGCGGTTAAAAACTACCCCT-ATTTTAATCA-CAGTTGTCACCT 467 consensus_503#1 AGGATTGGAAAATCCT------GAATAACCATTTCTGACTTTAAGCATCAGGTGCA--TT 428 * *** ** * * ** *** * ** * ***** ** *** ** * consensus_503#0 CTTGAGTACAGAAAGCTTAAATATTTTTGCTCAATGTCAAAATAGATAACAACGTTGTCA 527 consensus_503#1 CGACAGTGATGAAAAT---GATGGTAATGATGATTGTTCAGCACTGAAGCAACATTGACG 485 * *** **** ** * ** * * *** * * **** *** * consensus_503#0 ATTTAAAGAGAATATAAATCGACAAACCGGCAGAATGGT-AAAATCAACTTTGATAAATA 586 consensus_503#1 ACTTTCACTGGCTACCATGCGAAAAAGCAAGATTGCGGCCAGAGCTAACGCAACCATAAG 545 * ** * * ** * *** *** * * ** * * *** * * consensus_503#0 AGCAACGATGATATTACTTTTTTTTTCAGAAACACGAGCATACAGTATGAAAATTGA--- 643 consensus_503#1 CATAATAATAATGACAGACCAACCATAGGTTTCATGAGACCACATAGTAAAGGTCCAAGT 605 ** ** ** * * * ** *** *** * ** * * consensus_503#0 -------- consensus_503#1 GCAGCACC 613 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||