These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5034#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 530 fasta sequence [CAAAAGAGAATGTAAATATGAAAATGGACTGACATTTATCAGTATAGAACATGATTTTGTGGCATGCTTTTCAGAAACATTTAACAAGAATTCATGTTTGGGGACTCTATTGAAATTGAAGGATTCGGACGAAAGTTGATCATTAATACTTTTAAATGGTTGTGGTTTACGCCGCTGGCTGAATCGATCATTATTAGGTAAAATTAAGATATTTACATTTCCAGAACAAATTTTCTTTGCTGAACTCAATGATGTGTCAATTTTGTAACGAAAGTAATTGGATTCATAAGCGAGAGTCCATAAGGAATCCAAAGTTTTATCGAATTTCGAAGCAGTATTAGTTGACCGCAATATAAGGTCTTCATTTGTATACTCGAAGTTCATGCAGTGGAAGATTTCAATATACGGAAGAAGGTTCTGAAAAATTAAAAATTGGAGTTACGTAGTTGAAGTACACTTGAAAGATAGATATCTATATTACGTATAGAGGAAACAAGTTTCGACCTTCAGTTCGAAAAAGCACAAGGTCA] [+] EMBL CD156505 [CAAAAGAGAATGTAAATATGAAAATGGACTGACATTTATCAGTATAGAACATGATTTTGTGGCATGCTTTTCAGAAACATTTAACAAGAATTCATGTTTGGGGACTCTATTGAAATTGAAGGATTCGGACGAAAGTTGATCATTAATACTTTTAAATGGTTGTGGTTTACGCCGCTGGCTGAATCGATCATTATTAGGTAAAATTAAGATATTTACATTTCCAGAACAAATTTTCTTTGCTGAACTCAATGATGTGTCAATTTTGTAACGAAAGTAATTGGATTCATAAGCGAGAGTCCATAAGGAATCCAAAGTTTTATCGAATTTCGAAGCAGTATTAGTTGACCGCAATATAAGGTCTTCATTTGTATACTC ] [-] EMBL CD090372 [ AATCGATCA TATTAGGTAAAATTAAGATATTTACATTTCCAGAACAAATTTTCTTTGCTGAACTCAATGATGTGTCAATNTTGTAACGAAAGTAATTGGATTCATAAGCGAGAGTCCATAAGGAATCCAAAGTTTTATCGAATTTCGAAGCAGTATTAGTTGACCGCAATATAAGGTCTTCATTTGTATACTCGAAGTTCATGCAGTGGAAGATTTCAATATACGGAAGAAGGTTCTGAAAAATTAAAAATTGGAGTTACGTAGTTGAAGTACACTTGAAAGATAGATATCTATATTACGTATAGAGGAAACAAGTTTCGACCTTCAGTTCGAAAAAGCACAAGGTCA] consensusID : consensus_5034#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 341 fasta sequence [AAAGTTGATCATTAATACTTTTAAATGGTTGTGGTTTACGCCGCTGGCTGAATCGATCATTATTAGGCTAGGGTTACATAGTTAACAGACTTTACTTACTAAAATTAAGATATTTACATTTCCAGAACAAATTTTCTTTGCTGAACTCAATGATGTGTCAATTTTGTAACGAAAGTAATTGGATTCATAAGCGAGAGTCCATAAGGAATCCAAAGTTTTATCGAATTTCGAAGCAGTATTAGTTGACCGCAATATAAGGTCTTCATTTGTATACTCGAAGTTCATGCAGTGGAAGATTTCAATATACGGAAGAAGGTTAGATAAAATTCTGGAAATATCTC] [+] EMBL CD179161 [AAAGTTGATCATTAATACTTTTAAATGGTTGTGGTTTACGCCGCTGGCTGAATCGATCATTATTAGGCTAGGGTTACATAGTTAACAGACTTTACTTACTAAAATTAAGATATTTACATTTCCAGAACAAATTTTCTTTGCTGAACTCAATGATGTGTCAATTTTGTAACGAAAGTAATTGGATTCATAAGCGAGAGTCCATAAGGAATCCAAAGTTTTATCGAATTTCGAAGCAGTATTAGTTGACCGCAATATAAGGTCTTCATTTGTATACTCGAAGTTCATGCAGTGGAAGATTTCAATATACGGAAGAAGGTTAGATAAAATTCTGGAAATATCTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5034#0 CAAAAGAGAATGTAAATATGAAAATGGACTGACATTTATCAGTATAGAACATGATTTTGT 60 consensus_5034#1 ------------------------------------------------------------ consensus_5034#0 GGCATGCTTTTCAGAAACATTTAACAAGAATTCATGTTTGGGGACTCTATTGAAATTGAA 120 consensus_5034#1 ------------------------------------------------------------ consensus_5034#0 GGATTCGGACGAAAGTTGATCATTAATACTTTTAAATGGTTGTGGTTTACGCCGCTGGCT 180 consensus_5034#1 -----------AAAGTTGATCATTAATACTTTTAAATGGTTGTGGTTTACGCCGCTGGCT 49 ************************************************* consensus_5034#0 GAATCGATCATTATTAGG--------------------------------TAAAATTAAG 208 consensus_5034#1 GAATCGATCATTATTAGGCTAGGGTTACATAGTTAACAGACTTTACTTACTAAAATTAAG 109 ****************** ********** consensus_5034#0 ATATTTACATTTCCAGAACAAATTTTCTTTGCTGAACTCAATGATGTGTCAATTTTGTAA 268 consensus_5034#1 ATATTTACATTTCCAGAACAAATTTTCTTTGCTGAACTCAATGATGTGTCAATTTTGTAA 169 ************************************************************ consensus_5034#0 CGAAAGTAATTGGATTCATAAGCGAGAGTCCATAAGGAATCCAAAGTTTTATCGAATTTC 328 consensus_5034#1 CGAAAGTAATTGGATTCATAAGCGAGAGTCCATAAGGAATCCAAAGTTTTATCGAATTTC 229 ************************************************************ consensus_5034#0 GAAGCAGTATTAGTTGACCGCAATATAAGGTCTTCATTTGTATACTCGAAGTTCATGCAG 388 consensus_5034#1 GAAGCAGTATTAGTTGACCGCAATATAAGGTCTTCATTTGTATACTCGAAGTTCATGCAG 289 ************************************************************ consensus_5034#0 TGGAAGATTTCAATATACGGAAGAAGGTTCTGAAAAATTAAAAATTGGAGTTACGTAGTT 448 consensus_5034#1 TGGAAGATTTCAATATACGGAAGAAGGTT-----AGATAAAATTCTGGAAATATCTC--- 341 ***************************** * ** *** **** ** * consensus_5034#0 GAAGTACACTTGAAAGATAGATATCTATATTACGTATAGAGGAAACAAGTTTCGACCTTC 508 consensus_5034#1 ------------------------------------------------------------ consensus_5034#0 AGTTCGAAAAAGCACAAGGTCA 530 consensus_5034#1 ---------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||