These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5042#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 369 fasta sequence [NTCTTTTTTTTTTTTCATTTTTTTAAAATATTCTTATTGCATTTTTATTTTGAAATCGATTTACAAATATTTCTTGTTGTTGTTGGTAATTATTGTTACATCACTATATATTACTTTAAAACTGTATAAATCTTCCCCCTAATATTAGTAATAATAAGTAGTAAGTGTTAATTAAGTTTCATTTTTAAAATGGTTCAGATACAAGTCTAATATTATTATTATTATTGTTATTATTATTATTCATTACATTGAAATTGAACTTTTTGACTTCAATATTTGATTTATGCTCAACAGGATCATAAATATTATGATTTGATGAATCTTCTTTATTAATATTATTACTATGATTATTATTATTATTATCAATAT] [-] EMBL SMRAP167 [NTCTTTTTTTTTTTTCATTTTTTTAAAATATTCTTATTGCATTTTTATTTTGAAATCGATTTACAAATATTTCTTGTTGTTGTTGGTAATTATTGTTACATCACTATATATTA ] [+] EMBL AW017187 [ TTATTGCATTTTTATTTTGAAATCGATTTACAAATATTTCTTGTTGTTGTTGGTAATTATTGTTACATCACTATATATTACTTTAAAACTGTATAAATCTTCCCCCTAATATTAGTAATAATAAGTAGTAAGTGTTAATTAAGTTTCATTTTTAAAATGGTTCAGATACAAGTCTAATATTATTATTATTATTGTTATTATTATTATTCATTACATTGAAATTGAACTTTTTGACTTCAATATTTGATTTATGCTCAACAGGATCATAAATATTATGATTTGATGAATCTTCTTTATTAATATTATTACTATGATTATTATTATTATTATCAATAT] consensusID : consensus_5042#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 145 fasta sequence [TNATATATAGTGATGTAACACTAATTACCAACAACAACAAGAAATATTTGTAANTCGATTTCAAAATAAAAATGCAATAAGANTATTTCAAANCAATAGGTGAGAGGAAAATGATTATTTATTANTGAGTGAAATACATGANTAG] [+] EMBL SMRAP172 [TNATATATAGTGATGTAACACTAATTACCAACAACAACAAGAAATATTTGTAANTCGATTTCAAAATAAAAATGCAATAAGANTATTTCAAANCAATAGGTGAGAGGAAAATGATTATTTATTANTGAGTGAAATACATGANTAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5042#0 NTCTTTTTTTTTTTTCATTTTTTTAAAATATTCTTATTGCATTTTTATTTTGAAATCGAT 60 consensus_5042#1 ------------------------------------------------------------ consensus_5042#0 TTACAAATATTTCTTGTTGTTGTTGGTAATTATTGTTACATCACTATATATTACTTTAAA 120 consensus_5042#1 --------------------------------------------------------TNAT 4 * * consensus_5042#0 ACTGTATAAATCTTCCCCCTAATATTAGTAATAATAAGTAGTAAGTGTTAATTAAGTTTC 180 consensus_5042#1 A-TATAGTGATGTAACACTAATTACCAACAACAACAAGAAATATTTGT-AANTCGATTTC 62 * * ** ** * * * * ** * ** ** *** * ** *** ** * **** consensus_5042#0 ATTTTTAAAATGGTTCAGATACAAGTCTAATATTATTATTATTATTGTTATTATTATTAT 240 consensus_5042#1 AAAATAAAAATGC----AATAAGANTATTTCAAANCAATAGGTGAGAGGAAAATGATTAT 118 * * ****** *** * * * * ** * * ** ***** consensus_5042#0 TCATTACATTGAAATTGAACTTTTTGACTTCAATATTTGATTTATGCTCAACAGGATCAT 300 consensus_5042#1 TTATTAN--TGAG--TGAAATACATGANTAG----------------------------- 145 * **** *** **** * *** * consensus_5042#0 AAATATTATGATTTGATGAATCTTCTTTATTAATATTATTACTATGATTATTATTATTAT 360 consensus_5042#1 ------------------------------------------------------------ consensus_5042#0 TATCAATAT 369 consensus_5042#1 --------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||