Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 5044 cluster # 5044       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5044#0 length = 940 sequences # 1  
consensus_5044#1 length = 842 sequences # 2  

consensusID : consensus_5044#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 940
fasta sequence
                              [GGAAAAAAATGCATTAAATTGGTATGTAGTCTTTATACCAATTTATTGTTTATGCGTTTTAGGATTTTTGACATTCACAAAAGCGTTTTGTGAGTTAACTGTTTATGATTGTGAGAAATTTCTTGCATTAAATCTTCCATGTGTCATTCTAATTGCCTTACGTTTAGATAATTATATTAATTGGACATGGGTTGTAGTGTTAATACCATTCTGGATTATAATGGGATTTTTGATTGTATTGCTGCTATTTTTAGTTTGTATGTTGTGCGGATTGAGTCGTTTCACTCAGAAAGATCTTCATGATATTGTTTCAATGATTGGATGCACATCAATTGCATTTACTTTTCTCATATTCGTTGTTCTTTTGATCTGCCGATTAGATAATATTAAACTGTTTACATATAATGAAATATTCTTACCATTATTTANTTTGTGTTTTTTTTCTGATGATTATGACGATTTCTACAAACTGGTTAGTCAGCAAATTTTGCGGAAATATCAATAGTTCTAGTGGAAGAAATTGTTTAATGGAATATACCTCCGGATCTCGGTTATCAGCAAATACCTTCGTTGGACCCTATTGAAGGAGGAAATACACTTGTTGCTAATATAAATGTTTCACGTGATAAGTATTTCAGAAGTTCATCAGAATCTTACAAAGAACACTGCTTCCGAACCGCTTGAAAATAGTNGTCGAAACGGTTATCTCACTTCATACAGAAACTNCCTTGCAGNTATTTACTAAAATAAAGACAACATTNTCTTCATTCGAATAAACANACCACGTATGATTAAGATGACTCTTATCACTTCGGATAGAGTACTAATCTATGACATCGATATTGATTTACAACATATTCTACATTGNATCCAAACTGCTTATATGAGTGCATGGNNAGCATGTATTACTGATTGTAAACCTTCTTATTATTTTTTTAAA]

[+] EMBL CD080098             [GGAAAAAAATGCATTAAATTGGTATGTAGTCTTTATACCAATTTATTGTTTATGCGTTTTAGGATTTTTGACATTCACAAAAGCGTTTTGTGAGTTAACTGTTTATGATTGTGAGAAATTTCTTGCATTAAATCTTCCATGTGTCATTCTAATTGCCTTACGTTTAGATAATTATATTAATTGGACATGGGTTGTAGTGTTAATACCATTCTGGATTATAATGGGATTTTTGATTGTATTGCTGCTATTTTTAGTTTGTATGTTGTGCGGATTGAGTCGTTTCACTCAGAAAGATCTTCATGATATTGTTTCAATGATTGGATGCACATCAATTGCATTTACTTTTCTCATATTCGTTGTTCTTTTGATCTGCCGATTAGATAATATTAAACTGTTTACATATAATGAAATATTCTTACCATTATTTANTTTGTGTTTTTTTTCTGATGATTATGACGATTTCTACAAACTGGTTAGTCAGCAAATTTTGCGGAAATATCAATAGTTCTAGTGGAAGAAATTGTTTAATGGAATATACCTCCGGATCTCGGTTATCAGCAAATACCTTCGTTGGACCCTATTGAAGGAGGAAATACACTTGTTGCTAATATAAATGTTTCACGTGATAAGTATTTCAGAAGTTCATCAGAATCTTACAAAGAACACTGCTTCCGAACCGCTTGAAAATAGTNGTCGAAACGGTTATCTCACTTCATACAGAAACTNCCTTGCAGNTATTTACTAAAATAAAGACAACATTNTCTTCATTCGAATAAACANACCACGTATGATTAAGATGACTCTTATCACTTCGGATAGAGTACTAATCTATGACATCGATATTGATTTACAACATATTCTACATTGNATCCAAACTGCTTATATGAGTGCATGGNNAGCATGTATTACTGATTGTAAACCTTCTTATTATTTTTTTAAA]


>consensus_5044#0 GGAAAAAAATGCATTAAATTGGTATGTAGTCTTTATACCAATTTATTGTTTATGCGTTTT AGGATTTTTGACATTCACAAAAGCGTTTTGTGAGTTAACTGTTTATGATTGTGAGAAATT TCTTGCATTAAATCTTCCATGTGTCATTCTAATTGCCTTACGTTTAGATAATTATATTAA TTGGACATGGGTTGTAGTGTTAATACCATTCTGGATTATAATGGGATTTTTGATTGTATT GCTGCTATTTTTAGTTTGTATGTTGTGCGGATTGAGTCGTTTCACTCAGAAAGATCTTCA TGATATTGTTTCAATGATTGGATGCACATCAATTGCATTTACTTTTCTCATATTCGTTGT TCTTTTGATCTGCCGATTAGATAATATTAAACTGTTTACATATAATGAAATATTCTTACC ATTATTTANTTTGTGTTTTTTTTCTGATGATTATGACGATTTCTACAAACTGGTTAGTCA GCAAATTTTGCGGAAATATCAATAGTTCTAGTGGAAGAAATTGTTTAATGGAATATACCT CCGGATCTCGGTTATCAGCAAATACCTTCGTTGGACCCTATTGAAGGAGGAAATACACTT GTTGCTAATATAAATGTTTCACGTGATAAGTATTTCAGAAGTTCATCAGAATCTTACAAA GAACACTGCTTCCGAACCGCTTGAAAATAGTNGTCGAAACGGTTATCTCACTTCATACAG AAACTNCCTTGCAGNTATTTACTAAAATAAAGACAACATTNTCTTCATTCGAATAAACAN ACCACGTATGATTAAGATGACTCTTATCACTTCGGATAGAGTACTAATCTATGACATCGA TATTGATTTACAACATATTCTACATTGNATCCAAACTGCTTATATGAGTGCATGGNNAGC ATGTATTACTGATTGTAAACCTTCTTATTATTTTTTTAAA



consensusID : consensus_5044#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 842
fasta sequence
                              [CTCGAGGCCANAATTCGGCACGAGGCACATCAATTGCATTTACTTTTCTCATATTCGTTGTTCTTTTGATCTGCCGATTAGATAATATTAAACTGTTTACATATAATGAAATATTCTTACCATTATTTATTTGTGTTTTTTTTCTGATGATTATGACGATTTCTACAAACTGGTTAGTCAGCAAATTTTGCGGAAATATCAATAGTTCTAGTGGAAGAAATTGTTTAATGGAATATACCTCCGGATCTCGGTTATCAGCAAATACTTCGTTGGACCCTATTGAAGGAGGAAATACACTTGTTGCTAATATAAATGTTTCACGTGATAAGTATTCAGAAGTTCATCAGAATCTTACAAAGAACACTGCTTCCGAACCGCTTGAAAATAGTGTCGAAACGGTTATCTCACTCAATACAGAAACTCCTTGCAGTAATTTACTAATAAAAGACAAACATTTTCTTCATTCGAATAAACCAAACCAACGTATGATTAAAGATGACTCTTTATCACTTCCGGATTAGAGTACCTAAATCTAATGAACATCGTATATTGATTNTACAAACAATATTCTTACATTTGTAATCTCAAATACTGCTTATTTATGAAGTGCAATTGTAGAGGACAATGTTATTTAAACGTAATTTGTAAAACACGTTTTCATTATTTATTTTTTTTGTAAAAAAGACGTTTATTACAATGAATCGGCTTAATTTGTATTGAGATTAACAGATTTTGAGCGATTATTTAATTCATTATTCATGTTTGTGAAATAAGTGATAAATTCTACTATTCACAAAGTTCATTTATGACTGATACAACTATGAAATAAATCCCCGAGAAAA]

[+] EMBL CD082715             [CTCGAGGCCANAATTCGGCACGAGGCACATCAATTGCATTTACTTTTCTCATATTCGTTGTTCTTTTGATCTGCCGATTAGATAATATTAAACTGTTTACATATAATGAAATATTCTTACCATTATTTATTTGTGTTTTTTTTCTGATGATTATGACGATTTCTACAAACTGGTTAGTCAGCAAATTTTGCGGAAATATCAATAGTTCTAGTGGAAGAAATTGTTTAATGGAATATACCTCCGGATCTCGGTTATCAGCAAATACTTCGTTGGACCCTATTGAAGGAGGAAATACACTTGTTGCTAATATAAATGTTTCACGTGATAAGTATTCAGAAGTTCATCAGAATCTTACAAAGAACACTGCTTCCGAACCGCTTGAAAATAGTGTCGAAACGGTTATCTCACTCAATACAGAAACTCCTTGCAGTAATTTACTAATAAAAGACAAACATTTTCTTCATTCGAATAAACCAAACCAACGTATGATTAAAGATGACTCTTTATCACTTCCGGATTAGAGTACCTAAATCTAATGAACATCGTATATTGATTNTACAAACAATATTCTTACATTTGTAATCTCAAATACTGCTTATTTATGAAGTGCAATTGTAGAGGACAATGTTATTTAAAC                                                                                                                                                                                                             ]
[-] EMBL CD076305             [                                                                                                                                                                                                                                   ATGGAATATACTCCCGGATCTCGGTTATCAGCAAATACTTCGTTGGACCCTATTGAAGGAGGAAATACACTTGTTGCTAATATAAATGTTTCACGTGATAAGTATTCAGAAGTTCATCAGAATCTTACAAAGAACACTGCTTCCGAACCGCTTGAAAATAGTGTCGAAACGGTTATCTCACTCAATACAGAAACTCCTTGCAGTAATTTACTAATAAAAGACAAACATTTTCTTCATTCGAATAAACCAAACCAACGTATGATTAAAGATGACTCTTTATCACTTCCGGATTAGAGTACCTAAATCTAATGAACATCGTATATTGATTTTACAAACAATATTCTTACATTTGTAATCTCAAATACTGCTTATTTATGAAGTGCAATTGTAGAGGACAATGTTATTTAACTGTAATTTGTAAAACACGTTTTCATTATTTATTTTTTTTGTAAAAAAGACGTTTATTACAATGAATCGGCTTAATTTGTATTGAGATTAACAGATTTTGAGCGATTATTTAATTCATTATTCATGTTTGTGAAATAAGTGATAAATTCTACTATTCACAAAGTTCATTTATGACTGATACAACTATGAAATAAATCCCCGAGAAAA]


>consensus_5044#1 CTCGAGGCCANAATTCGGCACGAGGCACATCAATTGCATTTACTTTTCTCATATTCGTTG TTCTTTTGATCTGCCGATTAGATAATATTAAACTGTTTACATATAATGAAATATTCTTAC CATTATTTATTTGTGTTTTTTTTCTGATGATTATGACGATTTCTACAAACTGGTTAGTCA GCAAATTTTGCGGAAATATCAATAGTTCTAGTGGAAGAAATTGTTTAATGGAATATACCT CCGGATCTCGGTTATCAGCAAATACTTCGTTGGACCCTATTGAAGGAGGAAATACACTTG TTGCTAATATAAATGTTTCACGTGATAAGTATTCAGAAGTTCATCAGAATCTTACAAAGA ACACTGCTTCCGAACCGCTTGAAAATAGTGTCGAAACGGTTATCTCACTCAATACAGAAA CTCCTTGCAGTAATTTACTAATAAAAGACAAACATTTTCTTCATTCGAATAAACCAAACC AACGTATGATTAAAGATGACTCTTTATCACTTCCGGATTAGAGTACCTAAATCTAATGAA CATCGTATATTGATTNTACAAACAATATTCTTACATTTGTAATCTCAAATACTGCTTATT TATGAAGTGCAATTGTAGAGGACAATGTTATTTAAACGTAATTTGTAAAACACGTTTTCA TTATTTATTTTTTTTGTAAAAAAGACGTTTATTACAATGAATCGGCTTAATTTGTATTGA GATTAACAGATTTTGAGCGATTATTTAATTCATTATTCATGTTTGTGAAATAAGTGATAA ATTCTACTATTCACAAAGTTCATTTATGACTGATACAACTATGAAATAAATCCCCGAGAA AA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5044#0      GGAAAAAAATGCATTAAATTGGTATGTAGTCTTTATACCAATTTATTGTTTATGCGTTTT 60
consensus_5044#1      ------------------------------------------------------------
                                                                                  

consensus_5044#0      AGGATTTTTGACATTCACAAAAGCGTTTTGTGAGTTAACTGTTTATGATTGTGAGAAATT 120
consensus_5044#1      ------------------------------------------------------------
                                                                                  

consensus_5044#0      TCTTGCATTAAATCTTCCATGTGTCATTCTAATTGCCTTACGTTTAGATAATTATATTAA 180
consensus_5044#1      ------------------------------------------------------------
                                                                                  

consensus_5044#0      TTGGACATGGGTTGTAGTGTTAATACCATTCTGGATTATAATGGGATTTTTGATTGTATT 240
consensus_5044#1      ------------------------------------------------------------
                                                                                  

consensus_5044#0      GCTGCTATTTTTAGTTTGTATGTTGTGCGGATTGAGTCGTTTCACTCAGAAAGATCTTCA 300
consensus_5044#1      -------------------------------------------------------CTCGA 5
                                                                             **  *

consensus_5044#0      TGATATTGTTTCAATGATTGGATGCACATCAATTGCATTTACTTTTCTCATATTCGTTGT 360
consensus_5044#1      GGCCANAATT----CGGCACGAGGCACATCAATTGCATTTACTTTTCTCATATTCGTTGT 61
                       *  *   **     *    ** *************************************

consensus_5044#0      TCTTTTGATCTGCCGATTAGATAATATTAAACTGTTTACATATAATGAAATATTCTTACC 420
consensus_5044#1      TCTTTTGATCTGCCGATTAGATAATATTAAACTGTTTACATATAATGAAATATTCTTACC 121
                      ************************************************************

consensus_5044#0      ATTATTTANTTTGTGTTTTTTTTCTGATGATTATGACGATTTCTACAAACTGGTTAGTCA 480
consensus_5044#1      ATTATTTATTT-GTGTTTTTTTTCTGATGATTATGACGATTTCTACAAACTGGTTAGTCA 180
                      ******** ** ************************************************

consensus_5044#0      GCAAATTTTGCGGAAATATCAATAGTTCTAGTGGAAGAAATTGTTTAATGGAATATACCT 540
consensus_5044#1      GCAAATTTTGCGGAAATATCAATAGTTCTAGTGGAAGAAATTGTTTAATGGAATATACCT 240
                      ************************************************************

consensus_5044#0      CCGGATCTCGGTTATCAGCAAATACCTTCGTTGGACCCTATTGAAGGAGGAAATACACTT 600
consensus_5044#1      CCGGATCTCGGTTATCAGCAAATAC-TTCGTTGGACCCTATTGAAGGAGGAAATACACTT 299
                      ************************* **********************************

consensus_5044#0      GTTGCTAATATAAATGTTTCACGTGATAAGTATTTCAGAAGTTCATCAGAATCTTACAAA 660
consensus_5044#1      GTTGCTAATATAAATGTTTCACGTGATAAGTATT-CAGAAGTTCATCAGAATCTTACAAA 358
                      ********************************** *************************

consensus_5044#0      GAACACTGCTTCCGAACCGCTTGAAAATAGTNGTCGAAACGGTTATCTCACTTCATACAG 720
consensus_5044#1      GAACACTGCTTCCGAACCGCTTGAAAATAGTG-TCGAAACGGTTATCTCACTCAATACAG 417
                      *******************************  *******************  ******

consensus_5044#0      AAACTNCCTTGCAGNTATTTACTAAAATAAAGACAACATTNTCTTCATTCGAATAAAC-A 779
consensus_5044#1      AAACTCC-TTGCAGTAATTTACTAATAAAAGACAAACATTTTCTTCATTCGAATAAACCA 476
                      ***** * ******  ********* * **    ****** ***************** *

consensus_5044#0      NACCA-CGTATGATTAA-GATGACTCTT-ATCACTTCGGA--TAGAGTACT--AATCTAT 832
consensus_5044#1      AACCAACGTATGATTAAAGATGACTCTTTATCACTTCCGGATTAGAGTACCTAAATCTAA 536
                       **** *********** ********** ******** *   ********   ****** 

consensus_5044#0      --GACATCG-ATATTGATTT-ACAAC--ATATTCT-ACATTGN--ATCCAAA---CTGCT 880
consensus_5044#1      TGAACATCGTATATTGATTNTACAAACAATATTCTTACATTTGTAATCTCAAATACTGCT 596
                         ****** *********  ****   ******* *****    ***  **   *****

consensus_5044#0      TATATG---AGTGCA--TGGNNAGCATG-TATTACTGA--------TTGTAAACC---TT 923
consensus_5044#1      TATTTATGAAGTGCAATTGTAGAGGACAATGTTATTTAAACGTAATTTGTAAAACACGTT 656
                      *** *    ******  **   ** *   * *** * *        ******* *   **

consensus_5044#0      CTTATTATTTTTTTAAA------------------------------------------- 940
consensus_5044#1      TTCATTATTTATTTTTTTTGTAAAAAAGACGTTTATTACAATGAATCGGCTTAATTTGTA 716
                       * ******* ***                                              

consensus_5044#0      ------------------------------------------------------------
consensus_5044#1      TTGAGATTAACAGATTTTGAGCGATTATTTAATTCATTATTCATGTTTGTGAAATAAGTG 776
                                                                                  

consensus_5044#0      ------------------------------------------------------------
consensus_5044#1      ATAAATTCTACTATTCACAAAGTTCATTTATGACTGATACAACTATGAAATAAATCCCCG 836
                                                                                  

consensus_5044#0      ------
consensus_5044#1      AGAAAA 842
                            




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)