These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5044#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 940 fasta sequence [GGAAAAAAATGCATTAAATTGGTATGTAGTCTTTATACCAATTTATTGTTTATGCGTTTTAGGATTTTTGACATTCACAAAAGCGTTTTGTGAGTTAACTGTTTATGATTGTGAGAAATTTCTTGCATTAAATCTTCCATGTGTCATTCTAATTGCCTTACGTTTAGATAATTATATTAATTGGACATGGGTTGTAGTGTTAATACCATTCTGGATTATAATGGGATTTTTGATTGTATTGCTGCTATTTTTAGTTTGTATGTTGTGCGGATTGAGTCGTTTCACTCAGAAAGATCTTCATGATATTGTTTCAATGATTGGATGCACATCAATTGCATTTACTTTTCTCATATTCGTTGTTCTTTTGATCTGCCGATTAGATAATATTAAACTGTTTACATATAATGAAATATTCTTACCATTATTTANTTTGTGTTTTTTTTCTGATGATTATGACGATTTCTACAAACTGGTTAGTCAGCAAATTTTGCGGAAATATCAATAGTTCTAGTGGAAGAAATTGTTTAATGGAATATACCTCCGGATCTCGGTTATCAGCAAATACCTTCGTTGGACCCTATTGAAGGAGGAAATACACTTGTTGCTAATATAAATGTTTCACGTGATAAGTATTTCAGAAGTTCATCAGAATCTTACAAAGAACACTGCTTCCGAACCGCTTGAAAATAGTNGTCGAAACGGTTATCTCACTTCATACAGAAACTNCCTTGCAGNTATTTACTAAAATAAAGACAACATTNTCTTCATTCGAATAAACANACCACGTATGATTAAGATGACTCTTATCACTTCGGATAGAGTACTAATCTATGACATCGATATTGATTTACAACATATTCTACATTGNATCCAAACTGCTTATATGAGTGCATGGNNAGCATGTATTACTGATTGTAAACCTTCTTATTATTTTTTTAAA] [+] EMBL CD080098 [GGAAAAAAATGCATTAAATTGGTATGTAGTCTTTATACCAATTTATTGTTTATGCGTTTTAGGATTTTTGACATTCACAAAAGCGTTTTGTGAGTTAACTGTTTATGATTGTGAGAAATTTCTTGCATTAAATCTTCCATGTGTCATTCTAATTGCCTTACGTTTAGATAATTATATTAATTGGACATGGGTTGTAGTGTTAATACCATTCTGGATTATAATGGGATTTTTGATTGTATTGCTGCTATTTTTAGTTTGTATGTTGTGCGGATTGAGTCGTTTCACTCAGAAAGATCTTCATGATATTGTTTCAATGATTGGATGCACATCAATTGCATTTACTTTTCTCATATTCGTTGTTCTTTTGATCTGCCGATTAGATAATATTAAACTGTTTACATATAATGAAATATTCTTACCATTATTTANTTTGTGTTTTTTTTCTGATGATTATGACGATTTCTACAAACTGGTTAGTCAGCAAATTTTGCGGAAATATCAATAGTTCTAGTGGAAGAAATTGTTTAATGGAATATACCTCCGGATCTCGGTTATCAGCAAATACCTTCGTTGGACCCTATTGAAGGAGGAAATACACTTGTTGCTAATATAAATGTTTCACGTGATAAGTATTTCAGAAGTTCATCAGAATCTTACAAAGAACACTGCTTCCGAACCGCTTGAAAATAGTNGTCGAAACGGTTATCTCACTTCATACAGAAACTNCCTTGCAGNTATTTACTAAAATAAAGACAACATTNTCTTCATTCGAATAAACANACCACGTATGATTAAGATGACTCTTATCACTTCGGATAGAGTACTAATCTATGACATCGATATTGATTTACAACATATTCTACATTGNATCCAAACTGCTTATATGAGTGCATGGNNAGCATGTATTACTGATTGTAAACCTTCTTATTATTTTTTTAAA] consensusID : consensus_5044#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 842 fasta sequence [CTCGAGGCCANAATTCGGCACGAGGCACATCAATTGCATTTACTTTTCTCATATTCGTTGTTCTTTTGATCTGCCGATTAGATAATATTAAACTGTTTACATATAATGAAATATTCTTACCATTATTTATTTGTGTTTTTTTTCTGATGATTATGACGATTTCTACAAACTGGTTAGTCAGCAAATTTTGCGGAAATATCAATAGTTCTAGTGGAAGAAATTGTTTAATGGAATATACCTCCGGATCTCGGTTATCAGCAAATACTTCGTTGGACCCTATTGAAGGAGGAAATACACTTGTTGCTAATATAAATGTTTCACGTGATAAGTATTCAGAAGTTCATCAGAATCTTACAAAGAACACTGCTTCCGAACCGCTTGAAAATAGTGTCGAAACGGTTATCTCACTCAATACAGAAACTCCTTGCAGTAATTTACTAATAAAAGACAAACATTTTCTTCATTCGAATAAACCAAACCAACGTATGATTAAAGATGACTCTTTATCACTTCCGGATTAGAGTACCTAAATCTAATGAACATCGTATATTGATTNTACAAACAATATTCTTACATTTGTAATCTCAAATACTGCTTATTTATGAAGTGCAATTGTAGAGGACAATGTTATTTAAACGTAATTTGTAAAACACGTTTTCATTATTTATTTTTTTTGTAAAAAAGACGTTTATTACAATGAATCGGCTTAATTTGTATTGAGATTAACAGATTTTGAGCGATTATTTAATTCATTATTCATGTTTGTGAAATAAGTGATAAATTCTACTATTCACAAAGTTCATTTATGACTGATACAACTATGAAATAAATCCCCGAGAAAA] [+] EMBL CD082715 [CTCGAGGCCANAATTCGGCACGAGGCACATCAATTGCATTTACTTTTCTCATATTCGTTGTTCTTTTGATCTGCCGATTAGATAATATTAAACTGTTTACATATAATGAAATATTCTTACCATTATTTATTTGTGTTTTTTTTCTGATGATTATGACGATTTCTACAAACTGGTTAGTCAGCAAATTTTGCGGAAATATCAATAGTTCTAGTGGAAGAAATTGTTTAATGGAATATACCTCCGGATCTCGGTTATCAGCAAATACTTCGTTGGACCCTATTGAAGGAGGAAATACACTTGTTGCTAATATAAATGTTTCACGTGATAAGTATTCAGAAGTTCATCAGAATCTTACAAAGAACACTGCTTCCGAACCGCTTGAAAATAGTGTCGAAACGGTTATCTCACTCAATACAGAAACTCCTTGCAGTAATTTACTAATAAAAGACAAACATTTTCTTCATTCGAATAAACCAAACCAACGTATGATTAAAGATGACTCTTTATCACTTCCGGATTAGAGTACCTAAATCTAATGAACATCGTATATTGATTNTACAAACAATATTCTTACATTTGTAATCTCAAATACTGCTTATTTATGAAGTGCAATTGTAGAGGACAATGTTATTTAAAC ] [-] EMBL CD076305 [ ATGGAATATACTCCCGGATCTCGGTTATCAGCAAATACTTCGTTGGACCCTATTGAAGGAGGAAATACACTTGTTGCTAATATAAATGTTTCACGTGATAAGTATTCAGAAGTTCATCAGAATCTTACAAAGAACACTGCTTCCGAACCGCTTGAAAATAGTGTCGAAACGGTTATCTCACTCAATACAGAAACTCCTTGCAGTAATTTACTAATAAAAGACAAACATTTTCTTCATTCGAATAAACCAAACCAACGTATGATTAAAGATGACTCTTTATCACTTCCGGATTAGAGTACCTAAATCTAATGAACATCGTATATTGATTTTACAAACAATATTCTTACATTTGTAATCTCAAATACTGCTTATTTATGAAGTGCAATTGTAGAGGACAATGTTATTTAACTGTAATTTGTAAAACACGTTTTCATTATTTATTTTTTTTGTAAAAAAGACGTTTATTACAATGAATCGGCTTAATTTGTATTGAGATTAACAGATTTTGAGCGATTATTTAATTCATTATTCATGTTTGTGAAATAAGTGATAAATTCTACTATTCACAAAGTTCATTTATGACTGATACAACTATGAAATAAATCCCCGAGAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5044#0 GGAAAAAAATGCATTAAATTGGTATGTAGTCTTTATACCAATTTATTGTTTATGCGTTTT 60 consensus_5044#1 ------------------------------------------------------------ consensus_5044#0 AGGATTTTTGACATTCACAAAAGCGTTTTGTGAGTTAACTGTTTATGATTGTGAGAAATT 120 consensus_5044#1 ------------------------------------------------------------ consensus_5044#0 TCTTGCATTAAATCTTCCATGTGTCATTCTAATTGCCTTACGTTTAGATAATTATATTAA 180 consensus_5044#1 ------------------------------------------------------------ consensus_5044#0 TTGGACATGGGTTGTAGTGTTAATACCATTCTGGATTATAATGGGATTTTTGATTGTATT 240 consensus_5044#1 ------------------------------------------------------------ consensus_5044#0 GCTGCTATTTTTAGTTTGTATGTTGTGCGGATTGAGTCGTTTCACTCAGAAAGATCTTCA 300 consensus_5044#1 -------------------------------------------------------CTCGA 5 ** * consensus_5044#0 TGATATTGTTTCAATGATTGGATGCACATCAATTGCATTTACTTTTCTCATATTCGTTGT 360 consensus_5044#1 GGCCANAATT----CGGCACGAGGCACATCAATTGCATTTACTTTTCTCATATTCGTTGT 61 * * ** * ** ************************************* consensus_5044#0 TCTTTTGATCTGCCGATTAGATAATATTAAACTGTTTACATATAATGAAATATTCTTACC 420 consensus_5044#1 TCTTTTGATCTGCCGATTAGATAATATTAAACTGTTTACATATAATGAAATATTCTTACC 121 ************************************************************ consensus_5044#0 ATTATTTANTTTGTGTTTTTTTTCTGATGATTATGACGATTTCTACAAACTGGTTAGTCA 480 consensus_5044#1 ATTATTTATTT-GTGTTTTTTTTCTGATGATTATGACGATTTCTACAAACTGGTTAGTCA 180 ******** ** ************************************************ consensus_5044#0 GCAAATTTTGCGGAAATATCAATAGTTCTAGTGGAAGAAATTGTTTAATGGAATATACCT 540 consensus_5044#1 GCAAATTTTGCGGAAATATCAATAGTTCTAGTGGAAGAAATTGTTTAATGGAATATACCT 240 ************************************************************ consensus_5044#0 CCGGATCTCGGTTATCAGCAAATACCTTCGTTGGACCCTATTGAAGGAGGAAATACACTT 600 consensus_5044#1 CCGGATCTCGGTTATCAGCAAATAC-TTCGTTGGACCCTATTGAAGGAGGAAATACACTT 299 ************************* ********************************** consensus_5044#0 GTTGCTAATATAAATGTTTCACGTGATAAGTATTTCAGAAGTTCATCAGAATCTTACAAA 660 consensus_5044#1 GTTGCTAATATAAATGTTTCACGTGATAAGTATT-CAGAAGTTCATCAGAATCTTACAAA 358 ********************************** ************************* consensus_5044#0 GAACACTGCTTCCGAACCGCTTGAAAATAGTNGTCGAAACGGTTATCTCACTTCATACAG 720 consensus_5044#1 GAACACTGCTTCCGAACCGCTTGAAAATAGTG-TCGAAACGGTTATCTCACTCAATACAG 417 ******************************* ******************* ****** consensus_5044#0 AAACTNCCTTGCAGNTATTTACTAAAATAAAGACAACATTNTCTTCATTCGAATAAAC-A 779 consensus_5044#1 AAACTCC-TTGCAGTAATTTACTAATAAAAGACAAACATTTTCTTCATTCGAATAAACCA 476 ***** * ****** ********* * ** ****** ***************** * consensus_5044#0 NACCA-CGTATGATTAA-GATGACTCTT-ATCACTTCGGA--TAGAGTACT--AATCTAT 832 consensus_5044#1 AACCAACGTATGATTAAAGATGACTCTTTATCACTTCCGGATTAGAGTACCTAAATCTAA 536 **** *********** ********** ******** * ******** ****** consensus_5044#0 --GACATCG-ATATTGATTT-ACAAC--ATATTCT-ACATTGN--ATCCAAA---CTGCT 880 consensus_5044#1 TGAACATCGTATATTGATTNTACAAACAATATTCTTACATTTGTAATCTCAAATACTGCT 596 ****** ********* **** ******* ***** *** ** ***** consensus_5044#0 TATATG---AGTGCA--TGGNNAGCATG-TATTACTGA--------TTGTAAACC---TT 923 consensus_5044#1 TATTTATGAAGTGCAATTGTAGAGGACAATGTTATTTAAACGTAATTTGTAAAACACGTT 656 *** * ****** ** ** * * *** * * ******* * ** consensus_5044#0 CTTATTATTTTTTTAAA------------------------------------------- 940 consensus_5044#1 TTCATTATTTATTTTTTTTGTAAAAAAGACGTTTATTACAATGAATCGGCTTAATTTGTA 716 * ******* *** consensus_5044#0 ------------------------------------------------------------ consensus_5044#1 TTGAGATTAACAGATTTTGAGCGATTATTTAATTCATTATTCATGTTTGTGAAATAAGTG 776 consensus_5044#0 ------------------------------------------------------------ consensus_5044#1 ATAAATTCTACTATTCACAAAGTTCATTTATGACTGATACAACTATGAAATAAATCCCCG 836 consensus_5044#0 ------ consensus_5044#1 AGAAAA 842 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||