These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5047#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 421 fasta sequence [TTTTCGATTATCGGCATACGATTAAACTGGAGTCAAATACAGGGTACTAAATAGATGAGCACGTCGATAACTCCATCTTCAATGTCGTCACACGATTACAAGAAGTATATAATGATCTGAAAATATTTCCTCCCCCACCAAGATAATAGATTTGCATTTGTTGATTATGAGGAGAAAACGTTATTTACTTCCATGACATCCTGATTACTACATTACACAGCACCCAAGGTCACACACGTCCGCGTTTAATTAACTATAATCCCCGTTCCCGTGAAAACCTTAAAAACAATTCATTGAAGAATTGCAAATCAGTAAACAGACATTTTGACAAGTTCCATAAAAATACCAGTGATTCAAGGACACACAAACGACATGTTGATCAAATACAATCTCAGGAACCAGGTGTGTTGTTCCAATTTCA] [+] EMBL CD188343 [TTTTCGATTATCGGCATACGATTAAACTGGAGTCAAATACAGGGTACTAAATAGATGAGCACGTCGATAACTCCATCTTCAATGTCGTCACACGATTACAAGAAGTATATAATGATCTGAAAATATTTCCTCCCCCACCAAGATAATAGATTTGCATTTGTTGATTATGAGGAGAAAACGTTATTTACTTCCATGACATCCTGATTACTACATTACACAGCACCCAAGGTCACACACGTCCGCGTTTAATTAACTATAATCCCCGTTCCCGTGAAAACCTTAAAAACAATTCATTGAAGAATTGCAAATCAGTAAACAGACATTTTGACAAGTTCCATAAAAATACCAGTGATTCAAGGACACACAAACGACATGTTGATCAAATACAATCTCAGGAACCAGGTGTGTTGTTCCAATTTCA] consensusID : consensus_5047#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 350 fasta sequence [CGTTTAATTAACTATAATCCCCGTTCCCGTGAAAACCTTAAAAACAATTCATTGAAGAATTGCAAATCAGTAAACAGACATTTTGACAAGTTCCATAAAAGTAAGTCATGTTGTAAAGTTCATTAACATAATTTCTGTGCGTTTCGACATACTGTATGCTACAAGTTTGGTAATTACCTTCAAGTCCATTTGTGTAACGACTGTTTGTTTCTCCTCTAGAGATGATAAACGTAGCGGTTCGTATTTTATTAGGTAGGGTGTGTCTAACCATCATCATCTTTATTCACGATTTCGAAAGGTTATTTCCATGTTAAAATGGAAATTCAGAAGCCAGTATGCTGCTTCTCTTC] [-] EMBL CD159690 [CGTTTAATTAACTATAATCCCCGTTCCCGTGAAAACCTTAAAAACAATTCATTGAAGAATTGCAAATCAGTAAACAGACATTTTGACAAGTTCCATAAAAGTAAGTCATGTTGTAAAGTTCATTAACATAATTTCTGTGCGTTTCGACATACTGTATGCTACAAGTTTGGTAATTACCTTCAAGTCCATTTGTGTAACGACTGTTTGTTTCTCCTCTAGAGATGATAAACGTAGCGGTTCGTATTTTATTAGGTAGGGTGTGTCTAACCATCATCATCTTTATTCACGATTTCGAAAGGTTATTTCCATGTTAAAATGGAAATTCAGAAGCCAGTATGCTGCTTCTCTTC] [-] EMBL CD159621 [CGTTTAATTAACTATAATCCCCGTTCCCGTGAAAACCTTAAAAACAATTCATTGAAGAATTGCAAATCAGTAAACAGACATTTTGACAAGTTCCATAAAAGTAAGTCATGTTGTAAAGTTCATTAACATAATTTCTGTGCGTTTCGACATACTGTATGCTACAAGTTTGGTAATTACCTTCAAGTCCATTTGTGTAACGACTGTTCGTTTCTCCTCTAGAGATGATAAACGTAGCGGTTCGTATTTTATTAGGTAGGGTGTGTCTAACCATCATCATCTTTATTCACGATTTTGAAAGGTTATTTCCATGTTAAAATGGAAATTCAGAAGCCAGTATGCTGCTTCTCTTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5047#0 TTTTCGATTATCGGCATACGATTAAACTGGAGTCAAATACAGGGTACTAAATAGATGAGC 60 consensus_5047#1 -----------------------------------------------------------C 1 * consensus_5047#0 ACGTCGATAACTCCA-TCTTCAATGTCGTCACACGATTACAAGAAGTATAT-AATGATCT 118 consensus_5047#1 GTTTAATTAACTATAATCCCCGTTCCCGTGAAAACCTTAAAAACAATTCATTGAAGAATT 61 * ***** * ** * * *** * * *** ** * * ** * ** * consensus_5047#0 GAAAATATTTCCTCCCCCACCAAGATAATAGATTTGCATTTGTTGATTATGAGGAGAAAA 178 consensus_5047#1 GCAAATCAGTAAACAGACATTTTGACA--AGTTCCATAAAAGTAAGTCATGTTGTAAAGT 119 * **** * * ** ** * ** * * ** * *** * ** consensus_5047#0 -CGTTAT--TTACTTCCATGACATCCTGATTACTACATTACACAGCACCCAAGGTCACAC 235 consensus_5047#1 TCATTAACATAATTTCTGTGCGTTTCGACATACTGTATGCTACAAGTTTGGTAATTACCT 179 * *** * * *** ** * * **** ** *** * ** consensus_5047#0 ACGTCCGCGTTTAATTAACTATAATCCCCGTTCCCGTGAAAACCTTAAAAACAATTCATT 295 consensus_5047#1 TCAAGTCCATTTGTGTAACGACTGTTTGT-TTCTCCTCTAGAGATGATAAACG------T 232 * * *** **** * * *** * * * * * * **** * consensus_5047#0 GAAGAATTGCAAATCAGTAAACAGACATTTTGACAAGTTCCATAAAAATACCAGTGATTC 355 consensus_5047#1 AGCGGTTCGTATTTTATTAGGTAGGGTGTGTCTAACCATCATCATCTTTATTCACGATTT 292 * * * * * * ** ** * * * ** * ** **** consensus_5047#0 AAGGACACACAAACGACATGTTGATCAAATACAATCTCAGGAACCAGGTGTGTTGTTCCA 415 consensus_5047#1 --CGAAAGGTTATTTCCATGTTA---AAATGGAAATTCAGAAGCCAG-TATGCTGCTTCT 346 ** * * ****** **** ** **** * **** * ** ** * * consensus_5047#0 ATTTCA 421 consensus_5047#1 CTTC-- 350 ** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||