These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5057#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 400 fasta sequence [GTTATTTAGACTAGCGCTCGTAACATTAGCAACACGATTTAGTTCCTTAGACTGGTGCTGTGAAAATTTATTTGGATCAATTTCGAGCGTCCACGTATGCGATTACTTTGATTTACGATCGGATTACTGGGAAACGGCATTTTTACTAGTCATCAAGTCCTTTTTTAATGCCCAGAATATGCACACTAAACTATTTCATTCTCTGCTCAGGAGTTGTCATAACTATTGCGCTGATATTCCTTGTTAGGTCGAACCAGTTGGATGAGAAACTTTTTCCTTACTCAAAGAGGTTTAATGGTTCAGCTTGCGTAACGAAGGATGGGAAAGTAACATGTACAGAAAGTACACATCAAAGTTTGTCAGATTCATTTCGTCGCTTTATGATTTTTAAATGTTCACT] [+] EMBL CD116328 [GTTATTTAGACTAGCGCTCGTAACATTAGCAACACGATTTAGTTCCTTAGACTGGTGCTGTGAAAATTTATTTGGATCAATTTCGAGCGTCCACGTATGCGATTACTTTGATTTACGATCGGATTACTGGGAAACGGCATTTTTACTAGTCATCAAGTCCTTTTTTAATGCCCAGAATATGCACACTAAACTATTTCATTCTCTGCTCAGGAGTTGTCATAACTATTGCGCTGATATTCCTTGTTAGGTCGAACCAGTTGGATGAGAAACTTTTTCCTTACTCAAAGAGGTTTAATGGTTCAGCTTGCGTAACGAAGGATGGGAAAGTAACATGTACAGAAAGTACACATCAAAGTTTGTCAGATTCATTTCGTCGCTTTATGATTTTTAAATGTTCACT] [+] EMBL SMAA25633 [ TAGCAACACGATTTAGTTCCTTAAACTGGTGCTGTGAAAATTTA TTGGATCAATTTCGAGCGTCCACGTATGCGATTACTTTGATTTACGATCGGATTACTGGG AACGGCA TTTTACTAGTCATCAAGTCC TTTTTAATG CCAGAATATGCACACTAAACTATTTCA TCTCTGCTCAGGAG ] consensusID : consensus_5057#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 304 fasta sequence [TAGCAACACGATTTAGTTCCTTAAACTGGTGCTGTGAAAATTTATTTGGACTCAATTTCGAGCGTCCACGTATGCGATTACTTTGATTTACGATCGGATTACTGGGAAACGGCATTTTTACTAGTCATCAAGTCCTTTTTTCATGCCCAGAATATGCACACTAAACTATTTCATTCTCTGCTCAGGAGTTGTCATAACGTGAGAATCATCTTTTGATATAAAAAGCAGTATTGCGCTGATATTCCTTGTTAGGTCGAAACAGTTGGATGAGAAACTTTTTCCTTACTCAAAGAGGTTTAATGGT] [+] EMBL AA958288 [TAGCAACACGATTTAGTTCCTTAAACTGGTGCTGTGAAAATTTATTTGGACTCAATTTCGAGCGTCCACGTATGCGATTACTTTGATTTACGATCGGATTACTGGGAAACGGCATTTTTACTAGTCATCAAGTCCTTTTTTCATGCCCAGAATATGCACACTAAACTATTTCATTCTCTGCTCAGGAGTTGTCATAACGTGAGAATCATCTTTTGATATAAAAAGCAGTATTGCGCTGATATTCCTTGTTAGGTCGAAACAGTTGGATGAGAAACTTTTTCCTTACTCAAAGAGGTTTAATGGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5057#0 GTTATTTAGACTAGCGCTCGTAACATTAGCAACACGATTTAGTTCCTTAGACTGGTGCTG 60 consensus_5057#1 --------------------------TAGCAACACGATTTAGTTCCTTAAACTGGTGCTG 34 *********************** ********** consensus_5057#0 TGAAAATTTATTTGGA-TCAATTTCGAGCGTCCACGTATGCGATTACTTTGATTTACGAT 119 consensus_5057#1 TGAAAATTTATTTGGACTCAATTTCGAGCGTCCACGTATGCGATTACTTTGATTTACGAT 94 **************** ******************************************* consensus_5057#0 CGGATTACTGGGAAACGGCATTTTTACTAGTCATCAAGTCCTTTTTTAATGCCCAGAATA 179 consensus_5057#1 CGGATTACTGGGAAACGGCATTTTTACTAGTCATCAAGTCCTTTTTTCATGCCCAGAATA 154 *********************************************** ************ consensus_5057#0 TGCACACTAAACTATTTCATTCTCTGCTCAGGAGTTGTCATAAC---------------- 223 consensus_5057#1 TGCACACTAAACTATTTCATTCTCTGCTCAGGAGTTGTCATAACGTGAGAATCATCTTTT 214 ******************************************** consensus_5057#0 --------------TATTGCGCTGATATTCCTTGTTAGGTCGAACCAGTTGGATGAGAAA 269 consensus_5057#1 GATATAAAAAGCAGTATTGCGCTGATATTCCTTGTTAGGTCGAAACAGTTGGATGAGAAA 274 ****************************** *************** consensus_5057#0 CTTTTTCCTTACTCAAAGAGGTTTAATGGTTCAGCTTGCGTAACGAAGGATGGGAAAGTA 329 consensus_5057#1 CTTTTTCCTTACTCAAAGAGGTTTAATGGT------------------------------ 304 ****************************** consensus_5057#0 ACATGTACAGAAAGTACACATCAAAGTTTGTCAGATTCATTTCGTCGCTTTATGATTTTT 389 consensus_5057#1 ------------------------------------------------------------ consensus_5057#0 AAATGTTCACT 400 consensus_5057#1 ----------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||