These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_506#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 413 fasta sequence [ACCCTTTTTATTTTGTTTTATGGAGATGGGAACCTTGCTATGTAGTTCAGGCTAGCTCAGACTCGCAGCAATCCCTCTGCTTTAGCCTCCCAAGTGTCAAGATTAGCATGTGCCACCACACCTGGCTGGTATCTCTCTCTTTTTTTTAAATGATAGACAGCATTTCTCTGTATAGCTTTGGCTGTCCTGAAACTGGCTTTGTAAACCAGGCTGGCCTCGAACTCACAGAGATCCACCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGCGTGCACCACCACTGCTGCCACCTGGTTTATCTCTTTCATTTTTAAAGATCAGAAAATGAAGCCCAGCAACAATAATATTTTTACATGTTTATTTATGTATGCATGTGTTTTGTCTGCTTGTATGTCTGCATGCCAGAAGACNT] [+] EMBL AI764884 [ACCCTTTTTATTTTGTTTTATGGAGATGGGAACCTTGCTATGTAGTTCAGGCTAGCTCAGACTCGCAGCAATCCCTCTGCTTTAGCCTCCCAAGTGTCAAGATTAGCATGTGCCACCACACCTGGCTGGTATCTCTCTCTTTTTTTTAAATGATAGACAGCATTTCTCTGTATAGCTTTGGCTGTCCTGAAACTGGCTTTGTAAACCAGGCTGGCCTCGAACTCACAGAGATCCACCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGCGTGCACCACCACTGCTGCCACCTGGTTTATCTCTTTCATTTTTAAAGATCAGAAAATGAAGCCCAGCAACAATAATATTTTTACATGTTTATTTATGTATGCATGTGTTTTGTCTGCTTGTATGTCTGCATGCCAGAAGACNT] consensusID : consensus_506#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 157 fasta sequence [ATTCGGCACGACTTGGGAACTAGCTCTTGTAGACCAGGCTGGTCTTGAACTCACGGAGATCCGCCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGCGTTCACCAACACCGCCAGGCTCGCTTCTCGTGCCGAATTCGGCACGAGGGGACCCACCC] [+] EMBL AI764821 [ATTCGGCACGACTTGGGAACTAGCTCTTGTAGACCAGGCTGGTCTTGAACTCACGGAGATCCGCCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGCGTTCACCAACACCGCCAGGCTCGCTTCTCGTGCCGAATTCGGCACGAGGGGACCCACCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_506#0 ACCCTTTTTATTTTGTTTTATGGAGATGGGAACCTTGCTATGTAGTTCAGGCTAGCTCAG 60 consensus_506#1 ------------------------------------------------------------ consensus_506#0 ACTCGCAGCAATCCCTCTGCTTTAGCCTCCCAAGTGTCAAGATTAGCATGTGCCACCACA 120 consensus_506#1 ------------------------------------------------------------ consensus_506#0 CCTGGCTGGTATCTCTCTCTTTTTTTTAAATGATAGACAGCATTTCTCTGTATAGCTTTG 180 consensus_506#1 -------------------------------------------------------ATTCG 5 ** * consensus_506#0 GC-TGTCCTGA-AACTGGCT-TTGTAAACCAGGCTGGCCTCGAACTCACAGAGATCCACC 237 consensus_506#1 GCACGACTTGGGAACTAGCTCTTGTAGACCAGGCTGGTCTTGAACTCACGGAGATCCGCC 65 ** * * ** **** *** ***** ********** ** ******** ******* ** consensus_506#0 TGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGCGTGCACCACCACTGCTGCCACCTGGTT 297 consensus_506#1 TGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGCGTTCACCAACACCGCCA--GGCTCGCT 123 *********************************** ***** *** ** ** * * consensus_506#0 TATCTCTTTCATTTTTAAAGATCAGAAAATGAAGCCCAGCAACAATAATATTTTTACATG 357 consensus_506#1 --TCTCGTGCCGAATTCGGCACGAGGGGACCCACCC------------------------ 157 **** * * ** * ** * * ** consensus_506#0 TTTATTTATGTATGCATGTGTTTTGTCTGCTTGTATGTCTGCATGCCAGAAGACNT 413 consensus_506#1 -------------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||