cluster # 506

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Schistosoma mansoni
cluster # 506 cluster # 506 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_506#0 length = 413 sequences # 1

consensus_506#1 length = 157 sequences # 1

consensusID : consensus_506#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 413
fasta sequence

                              [ACCCTTTTTATTTTGTTTTATGGAGATGGGAACCTTGCTATGTAGTTCAGGCTAGCTCAGACTCGCAGCAATCCCTCTGCTTTAGCCTCCCAAGTGTCAAGATTAGCATGTGCCACCACACCTGGCTGGTATCTCTCTCTTTTTTTTAAATGATAGACAGCATTTCTCTGTATAGCTTTGGCTGTCCTGAAACTGGCTTTGTAAACCAGGCTGGCCTCGAACTCACAGAGATCCACCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGCGTGCACCACCACTGCTGCCACCTGGTTTATCTCTTTCATTTTTAAAGATCAGAAAATGAAGCCCAGCAACAATAATATTTTTACATGTTTATTTATGTATGCATGTGTTTTGTCTGCTTGTATGTCTGCATGCCAGAAGACNT]

[+] EMBL AI764884             [ACCCTTTTTATTTTGTTTTATGGAGATGGGAACCTTGCTATGTAGTTCAGGCTAGCTCAGACTCGCAGCAATCCCTCTGCTTTAGCCTCCCAAGTGTCAAGATTAGCATGTGCCACCACACCTGGCTGGTATCTCTCTCTTTTTTTTAAATGATAGACAGCATTTCTCTGTATAGCTTTGGCTGTCCTGAAACTGGCTTTGTAAACCAGGCTGGCCTCGAACTCACAGAGATCCACCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGCGTGCACCACCACTGCTGCCACCTGGTTTATCTCTTTCATTTTTAAAGATCAGAAAATGAAGCCCAGCAACAATAATATTTTTACATGTTTATTTATGTATGCATGTGTTTTGTCTGCTTGTATGTCTGCATGCCAGAAGACNT]




>consensus_506#0
ACCCTTTTTATTTTGTTTTATGGAGATGGGAACCTTGCTATGTAGTTCAGGCTAGCTCAG
ACTCGCAGCAATCCCTCTGCTTTAGCCTCCCAAGTGTCAAGATTAGCATGTGCCACCACA
CCTGGCTGGTATCTCTCTCTTTTTTTTAAATGATAGACAGCATTTCTCTGTATAGCTTTG
GCTGTCCTGAAACTGGCTTTGTAAACCAGGCTGGCCTCGAACTCACAGAGATCCACCTGC
CTCTGCCTCCCGAGTGCTGGGATTAAAGGCGTGCACCACCACTGCTGCCACCTGGTTTAT
CTCTTTCATTTTTAAAGATCAGAAAATGAAGCCCAGCAACAATAATATTTTTACATGTTT
ATTTATGTATGCATGTGTTTTGTCTGCTTGTATGTCTGCATGCCAGAAGACNT

consensusID : consensus_506#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 157
fasta sequence

                              [ATTCGGCACGACTTGGGAACTAGCTCTTGTAGACCAGGCTGGTCTTGAACTCACGGAGATCCGCCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGCGTTCACCAACACCGCCAGGCTCGCTTCTCGTGCCGAATTCGGCACGAGGGGACCCACCC]

[+] EMBL AI764821             [ATTCGGCACGACTTGGGAACTAGCTCTTGTAGACCAGGCTGGTCTTGAACTCACGGAGATCCGCCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGCGTTCACCAACACCGCCAGGCTCGCTTCTCGTGCCGAATTCGGCACGAGGGGACCCACCC]




>consensus_506#1
ATTCGGCACGACTTGGGAACTAGCTCTTGTAGACCAGGCTGGTCTTGAACTCACGGAGAT
CCGCCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGCGTTCACCAACACCGCCAGGCTC
GCTTCTCGTGCCGAATTCGGCACGAGGGGACCCACCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_506#0      ACCCTTTTTATTTTGTTTTATGGAGATGGGAACCTTGCTATGTAGTTCAGGCTAGCTCAG 60
consensus_506#1      ------------------------------------------------------------
                                                                                 

consensus_506#0      ACTCGCAGCAATCCCTCTGCTTTAGCCTCCCAAGTGTCAAGATTAGCATGTGCCACCACA 120
consensus_506#1      ------------------------------------------------------------
                                                                                 

consensus_506#0      CCTGGCTGGTATCTCTCTCTTTTTTTTAAATGATAGACAGCATTTCTCTGTATAGCTTTG 180
consensus_506#1      -------------------------------------------------------ATTCG 5
                                                                             ** *

consensus_506#0      GC-TGTCCTGA-AACTGGCT-TTGTAAACCAGGCTGGCCTCGAACTCACAGAGATCCACC 237
consensus_506#1      GCACGACTTGGGAACTAGCTCTTGTAGACCAGGCTGGTCTTGAACTCACGGAGATCCGCC 65
                     **  * * **  **** *** ***** ********** ** ******** ******* **

consensus_506#0      TGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGCGTGCACCACCACTGCTGCCACCTGGTT 297
consensus_506#1      TGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGCGTTCACCAACACCGCCA--GGCTCGCT 123
                     *********************************** ***** *** **      ** * *

consensus_506#0      TATCTCTTTCATTTTTAAAGATCAGAAAATGAAGCCCAGCAACAATAATATTTTTACATG 357
consensus_506#1      --TCTCGTGCCGAATTCGGCACGAGGGGACCCACCC------------------------ 157
                       **** * *    **    *  **   *   * **                        

consensus_506#0      TTTATTTATGTATGCATGTGTTTTGTCTGCTTGTATGTCTGCATGCCAGAAGACNT 413
consensus_506#1      --------------------------------------------------------