These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5068#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 596 fasta sequence [CAATCCATGACACCTTTTTTTGGCTTTGCTTTATTGGCTTCTGTACATGTTGTGTATGAGCACGACTAGTTTGTAAACTGTTTTTAGGAATATTTTGCACTTTTGGGCACATATTACGTGGTTTCACTTCATATGGTTTCTCATTATTAAAATTACCCCCTGGACCGTAATTACACACGATTGATAGACCGTACCGTGGACAATTCGCAACTCCACATCCAATGTCTGTGGTCTTGGCCCAAGCCATTTGTGTGTAATGCAAACATTGAGGACAGTTGTTTGTATTGCAATTGTATAATTTGTGTTCATTGAACCAAGCATCCACTCCTGACTTAATGGTTGGATGGAGAGCGATATTTTGTCCAACCCAAATGAATTGTTTCGAATATCGTTTGTCGTGTTGTAGGGTGCAATTTATCGCCAATGATTGTGCTTGTCGAGCTAAATCGTGATTCCACTTCAATGGTGACATATATTTATCTGGAGGTTGTCCATCAACTGTACAATCAACTAAATCTTGACTGTATTCTCTATGCAGTTCAAGTAATTCTTCACTGTTTTTATCTAATTTTTTCGTTAGGATTAGCACCATAGAC] [+] EMBL CD116244 [CAATCCATGACACCTTTTTTTGGCTTTGCTTTATTGGCTTCTGTACATGTTGTGTATGAGCACGACTAGTTTGTAAACTGTTTTTAGGAATATTTTGCACTTTTGGGCACATATTACGTGGTTTCACTTCATATGGTTTCTCATTATTAAAATTACCCCCTGGACCGTAATTACACACGATTGATAGACCGTACCGTGGACAATTCGCAACTCCACATCCAATGTCTGTGGTCTTGGCCCAAGCCATTTGTGTGTAATGCAAACATTGAGGACAGTTGTTTGTATTGCAATTGTATAATTTGTGTTCATTGAACCAAGCATCCACTCCTGACTTAATGGTTGGATGGAGAGCGATATTTTGTCCAACCCAAATGAATTGTTTCGAATATCGTTTGTCGTGTTGTAGGGTGCAATTTATCGCCAATGATTGTGCTTGTCGAGCTAAATCGTGATTCCACTTCAATGGTGACATATATTTATCTGGAGGTTGTCCATCAACTGTACAATCAACTAAATCTTGACTGTATTCTCTATGCAGTTCAAGTAATTCTTCACTGTTTTTATCTAATTTTTTCGTTAGGATTAGCACCATAGAC] [-] EMBL AI619006 [ TAG TTGTAAACAG TTTTAGGAATA TTTGCAC TTTGGGCGCATA TACGTGGTGTCACCTCATATGG TTCTCATTATTAAAAATACCCCCCTGACCGT ATTACACACGATTGATAGACCGTACC TGGACAATTCGCAACTCCACATCCAATGTCTGTGGTCTTGGCCCAAGCCATTTGTGTGTAATGCAAACATTGAGGACAGTTGTTTGTATTGTAATTGTATAATTTGTGTTCATTGAACCAAGCATCCACTCCTGACTTAATGGTTGGATGGAGAGCTATA TTTGTCCAACCCAAATGAATTGTTTCGAATATCGTTTGTCGTGTTGTAGGGTGCAATTTATCGCCAATGATTGTGCTTGTCGAGCTAAATCGTGATTCCACTTCAATGGTGACATATATTTAGCTGGAGGTTGTCCATCAACTTTACAATCAACTAAATCTTGTCT ] consensusID : consensus_5068#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 391 fasta sequence [ACACGATTGATAGACCGTACCGTGGACAATTCGCAACTCCACATCCAATGTCTGTGGTCTTGGATGGAGAGCTATATTTTGTCCAACCCAACTGTATTGATTCGAATGTCGTTTGTCGTGACGTAAGATGCATTTGTTTGCCAATGATTGTGCTTGTCGAGCTAAATCGTGATTCCACTTCAATGGTGACATATATTTAGCTGGAGGTTGTCCATCAACTTTACAATCAACTAAATCTTGTCTGTATTTTCTATGCAGATTGAGCAACTCTTCACTTTTCGCATCTAATCCACCGTTTGCATAAATCATATTAACAAGAATCATTAGTATATGTACGACAAGTGTAACATTCTCTTCACGTAAGAACATTATGATAGTTTATTCTATTCTG] [-] EMBL CD142011 [ACACGATTGATAGACCGTACCGTGGACAATTCGCAACTCCACATCCAATGTCTGTGGTCTTGGATGGAGAGCTATATTTTGTCCAACCCAACTGTATTGATTCGAATGTCGTTTGTCGTGACGTAAGATGCATTTGTTTGCCAATGATTGTGCTTGTCGAGCTAAATCGTGATTCCACTTCAATGGTGACATATATTTAGCTGGAGGTTGTCCATCAACTTTACAATCAACTAAATCTTGTCTGTATTTTCTATGCAGATTGAGCAACTCTTCACTTTTCGCATCTAATCCACCGTTTGCATAAATCATATTAACAAGAATCATTAGTATATGTACGACAAGTGTAACATTCTCTTCACGTAAGAACATTATGATAGTTTATTCTATTCTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5068#0 CAATCCATGACACCTTTTTTTGGCTTTGCTTTATTGGCTTCTGTACATGTTGTGTATGAG 60 consensus_5068#1 ------------------------------------------------------------ consensus_5068#0 CACGACTAGTTTGTAAACTGTTTTTAGGAATATTTTGCACTTTTGGGCACATATTACGTG 120 consensus_5068#1 ------------------------------------------------------------ consensus_5068#0 GTTTCACTTCATATGGTTTCTCATTATTAAAATTACCCCCTGGACCGTAATTACACACGA 180 consensus_5068#1 ------------------------------------------------------------ consensus_5068#0 TTGATAGACCGTACCGTGGACAATTCGCAACTCCACATCCAATGTCTGTGGTCTTGGCCC 240 consensus_5068#1 ------------------------------------------------------------ consensus_5068#0 AAGCCATTTGTGTGTAATGCAAACATTGAGGACAGTTGTTTGTATTGCAAT-TGTATAAT 299 consensus_5068#1 -----------------------------ACACGATTGATAG-ACCGTACCGTGGACAAT 30 ** *** * * * * * ** * *** consensus_5068#0 TTGTGTTCATTGAACCAAGCATCCACTCCTGACTTAATGGTTGGATGGAGAGCGATATTT 359 consensus_5068#1 TCGC--------AACTCCACATCCAAT---GTCTGTGGTCTTGGATGGAGAGCTATATTT 79 * * *** ****** * * ** ************* ****** consensus_5068#0 TGTCCAACCCAAATGAATTGTTTCGAATATCGTTTGTCGTGTTGTAGGGTGCAATTTATC 419 consensus_5068#1 TGTCCAACCCAACTGTATTGATTCGAATGTCGTTTGTCGTGACGTAAGATGCATTTGTTT 139 ************ ** **** ******* ************ *** * **** ** * consensus_5068#0 GCCAATGATTGTGCTTGTCGAGCTAAATCGTGATTCCACTTCAATGGTGACATATATTTA 479 consensus_5068#1 GCCAATGATTGTGCTTGTCGAGCTAAATCGTGATTCCACTTCAATGGTGACATATATTTA 199 ************************************************************ consensus_5068#0 TCTGGAGGTTGTCCATCAACTGTACAATCAACTAAATCTTGACTGTATTCTCTATGCAGT 539 consensus_5068#1 GCTGGAGGTTGTCCATCAACTTTACAATCAACTAAATCTTGTCTGTATTTTCTATGCAGA 259 ******************** ******************* ******* ********* consensus_5068#0 TCAAGTAATTCTTCACTGTTTTTATCTAATTTTTTCGTTAGGATTAGCACCATAGAC--- 596 consensus_5068#1 TTGAGCAACTCTTCACTTTTCGCATCTAATCCAC-CGTTTGCATAAATCATATTAACAAG 318 * ** ** ******** ** ******* **** * ** * ** ** consensus_5068#0 ------------------------------------------------------------ consensus_5068#1 AATCATTAGTATATGTACGACAAGTGTAACATTCTCTTCACGTAAGAACATTATGATAGT 378 consensus_5068#0 ------------- consensus_5068#1 TTATTCTATTCTG 391 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||