These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5085#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 587 fasta sequence [GTGCTGATCGACAACGGCCAAGAAGAATAGCCATCAGTTCTAAGTATGGTCGAGCTAGAAGTAAGGCAGCAGTTGAAGCAACATTTTCTGTTGAGCGTATATGCCGTAAAATTGCACTGTGTGATGCATTACACCGTTTAATCAACCAATGACGTAAAACAGACGGCATGGTTATTCCTACATCCCCTGTTCCATATACCACATCATGATCCAAATCCACAAGTCGAACTCCAGGAATTAACAGTGGTTTCATCTTCTCTTTTAAACATGAGTGGACACCAGCAACAAATGGGGTCGGACAGCCAACATATTCAATACAATTGGAAGGTAACAGAGAATAAATTAAATGAGGCCATATAAGTGGGTACAACAAACTTAAACTGGCCAAAAGACATGAAGTAATACGCTGTAAACGACTTGAGTAGAATATTACACTTTTCTCCAAAATTAGGCTTTCAAATATTACAATCCAATTGCCGATAGACAATGTATTATAATACTCTANAATATGTCTATG-AAAACANACTGAAACTGAGCTTCCGGGAGTTGTATACTTAACTTCGTCGAATTTGGAGGTGATGAAATGT] [+] EMBL CD159009 [GTGCTGATCGACAACGGCCAAGAAGAATAGCCATCAGTTCTAAGTATGGTCGAGCTAGAAGTAAGGCAGCAGTTGAAGCAACATTTTCTGTTGAGCGTATATGCCGTAAAATTGCACTGTGTGATGCATTACACCGTTTAATCAACCAATGACGTAAAACAGACGGCATGGTTATTCCTACATCCCCTGTTCCATATACCACATCATGATCCAAATCCACAAGTCGAACTCCAGGAATTAACAGTGGTTTCATCTTCTCTTTTAAACATGAGTGGACACCAGCAACAAATGGGGTCGGACAGCCAACATATTCAATACAATTGGAAGGTAACAGAGAATAAATTAAATGAGGCCATATAAGTGGGTACAACAAACTTAAACTGGCCAAAAGACATGAAGTAATACGCTGTAAACGACTTGAGTAGAATATTACACTTTTCTCCAAAATTAGGCTTTCAAATATTACAATCCAATTGCCGATAGACAATGTATTATAATACTCTANAATATGTCTATG AAAACANACTGAAACTGAGCTTCCGGGAGTTGTATACTTAACTTCGTCGAATTTGGAGGTGATGAAATGT] [+] EMBL CD192997 [ CATGATCCAAATCCACAAGTCGAACTCCAGGAATTAACAGTGGTTTCATCTTCTCTTTTAAACATGAGTGGACACCAGCAACAAATGGGGTCGGACAGCCAACATATTCAATACAATTGGAAGGTAACAGAGAATAAATTAAATGAGGCCATATAAGTGGGTACAACAAACTTAAACTGGCCAAAAGACATGAAGTAATACGCTGTAAACGACTTGAGTAGAATATTACACTTTTCTCCAAAATTAGGCTTTCAAATATTACAATCCAATTGCCGATAGACAATGTATTATAATACTCTAAAATATGTCTATGAAAAACAAACTGAAACTGA ] consensusID : consensus_5085#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 451 fasta sequence [CATTTGGTGATTGTATTGGTAAAAGATCGACAGATGTAGAAACTTCATTATGTTGCAGTGCTGATCGATAACGGCCAAGAAGAATAGCCATCAGTTCTAAGTATGGTCGAGCTAGAAGTAAGGCAGCAGTTGAAGCAACATTTTCTGTTGAGCGTATATGCCGTAAAATTGCACTGTGTGATGCATTACACCGTTTAATCAACCAATGACGTAAAACAGACGGCATGGTTATTCCTACATCCCCTGTTCCATATACCACATCATGATCCAAATCCACAAGTCGAACTCCAGGAATTAACAGTGGTTTCATCTTCTATACAAATAAAAAGCAGAACTTTAAAAAAAATTAAAGACTTACATTGAAACCATGAGCCCATCAATGTTAGACCACAATTAGAAACCTGGAAGTACTGGACGGCCGTTTTTTTTCTAGTGTGGGGCTCCTCAGCAG] [-] EMBL CD060597 [CATTTGGTGATTGTATTGGTAAAAGATCGACAGATGTAGAAACTTCATTATGTTGCAGTGCTGATCGATAACGGCCAAGAAGAATAGCCATCAGTTCTAAGTATGGTCGAGCTAGAAGTAAGGCAGCAGTTGAAGCAACATTTTCTGTTGAGCGTATATGCCGTAAAATTGCACTGTGTGATGCATTACACCGTTTAATCAACCAATGACGTAAAACAGACGGCATGGTTATTCCTACATCCCCTGTTCCATATACCACATCATGATCCAAATCCACAAGTCGAACTCCAGGAATTAACAGTGGTTTCATCTTCTATACAAATAAAAAGCAGAACTTTAAAAAAAATTAAAGACTTACATTGAAACCATGAGCCCATCAATGTTAGACCACAATTAGAAACCTGGAAGTACTGGACGGCCGTTTTTTTTCTAGTGTGGGGCTCCTCAGCAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5085#0 ---------------------------------------------------------GTG 3 consensus_5085#1 CATTTGGTGATTGTATTGGTAAAAGATCGACAGATGTAGAAACTTCATTATGTTGCAGTG 60 *** consensus_5085#0 CTGATCGACAACGGCCAAGAAGAATAGCCATCAGTTCTAAGTATGGTCGAGCTAGAAGTA 63 consensus_5085#1 CTGATCGATAACGGCCAAGAAGAATAGCCATCAGTTCTAAGTATGGTCGAGCTAGAAGTA 120 ******** *************************************************** consensus_5085#0 AGGCAGCAGTTGAAGCAACATTTTCTGTTGAGCGTATATGCCGTAAAATTGCACTGTGTG 123 consensus_5085#1 AGGCAGCAGTTGAAGCAACATTTTCTGTTGAGCGTATATGCCGTAAAATTGCACTGTGTG 180 ************************************************************ consensus_5085#0 ATGCATTACACCGTTTAATCAACCAATGACGTAAAACAGACGGCATGGTTATTCCTACAT 183 consensus_5085#1 ATGCATTACACCGTTTAATCAACCAATGACGTAAAACAGACGGCATGGTTATTCCTACAT 240 ************************************************************ consensus_5085#0 CCCCTGTTCCATATACCACATCATGATCCAAATCCACAAGTCGAACTCCAGGAATTAACA 243 consensus_5085#1 CCCCTGTTCCATATACCACATCATGATCCAAATCCACAAGTCGAACTCCAGGAATTAACA 300 ************************************************************ consensus_5085#0 GTGGTTTCATCTTCTCTTTTAAACATGAGTGGA-CACCAGCAACAAATGGGGTCGGACAG 302 consensus_5085#1 GTGGTTTCATCTTCTATACAAATAAAAAGCAGAACTTTAAAAAAAATTAAAGACTTACAT 360 *************** * ** * ** ** * * ** ** * * * *** consensus_5085#0 CCAACATATTCAAT-ACAATTGGAAGGTAACAGAGAATAAATTAAATGAGGCC-ATATAA 360 consensus_5085#1 TGAAACCATGAGCCCATCAATGTTAGACCACAATTAGAAACCTGGAAGTACTGGACGGCC 420 ** ** * * ** ** *** * ** * * * * consensus_5085#0 GTGGGTACAACAAACTTAAACTGGCCAAAAGACATGAAGTAATACGCTGTAAACGACTTG 420 consensus_5085#1 GTTTTTTTTCTAGTGTGGGGCTCCTCAGCAG----------------------------- 451 ** * * * ** ** ** consensus_5085#0 AGTAGAATATTACACTTTTCTCCAAAATTAGGCTTTCAAATATTACAATCCAATTGCCGA 480 consensus_5085#1 ------------------------------------------------------------ consensus_5085#0 TAGACAATGTATTATAATACTCTANAATATGTCTATGAAAACANACTGAAACTGAGCTTC 540 consensus_5085#1 ------------------------------------------------------------ consensus_5085#0 CGGGAGTTGTATACTTAACTTCGTCGAATTTGGAGGTGATGAAATGT 587 consensus_5085#1 ----------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||