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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5086#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 892 fasta sequence
[CGAGGCGGCACGAGGTGGATAAGGAAGTTAAATTGAATTAAGAAGAGCTTGTTTCCGAGCTTACAACAGGAAAAGTTATATGTGGAGGCATCGGTGCAGCACTGCGTTATCGAAGATTTTCACCCCTGGCAGAAAGTGGAAGTGCAGCTAGTTCAGCTTTGGACAATAGTTATATATGCAAATTAAAAACAGGAAATCTAAATCAAAATGAACCTACTGGCCAACAGACCAACAATATCACAGCAGTTTTGGATCATGAAACAATTTCGAACGAGGAATTTTATTTACGTAAGGAATGTGATATCGTTTTGAAAGAACTCGCCGAGTGGAGAAAACTACACTCAGAACCAAAACTACTTAACTCATGTAAAAGTATAAAGAGAAGAAAGAACAAAGTTACAAAAGCAGATTTGGAATGTCCCTCAGTCATTTTATCACCTAACAGTGATGAAAATACATTAGATAATCATAGAGATGTAAAAGAGGAGTGCACTGAAGATGTGGTCACATCAAATAAATCATTAGAAAATTGTAACCAAAAACCATATACAACGCATAAAAAGAAGCTTGCGAATTCGAATCAAAATCAAAATCATAAAAATCCTGCACCGTTTAAAATGTCAAATGAAATCGANCAAAGTCAAATTAAAATTAAACAAAGCGGGTGTTGGTAAAAGCTCAATTNAATATCGATCAGTATCTGGAGTCTGGTCTTCATCAGATTCATCACTGCCAATTAATTATNGATCGATCACACGAATACATCATCTGTTTTTTCAATTCATNNCAATGNTCTTCCCATAGACAAGNTAANGAATCATCATCCATGGTGATGGGNATAGNTGATGGGNATATGGTGATATAAGGCATATCATCATCATTAGTTAATAAT]
[+] EMBL CD082186 [CGAGGCGGCACGAGGTGGATAAGGAAGTTAAATTGAATTAAGAAGAGCTTGTTTCCGAGCTTACAACAGGAAAAGTTATATGTGGAGGCATCGGTGCAGCACTGCGTTATCGAAGATTTTCACCCCTGGCAGAAAGTGGAAGTGCAGCTAGTTCAGCTTTGGACAATAGTTATATATGCAAATTAAAAACAGGAAATCTAAATCAAAATGAACCTACTGGCCAACAGACCAACAATATCACAGCAGTTTTGGATCATGAAACAATTTCGAACGAGGAATTTTATTTACGTAAGGAATGTGATATCGTTTTGAAAGAACTCGCCGAGTGGAGAAAACTACACTCAGAACCAAAACTACTTAACTCATGTAAAAGTATAAAGAGAAGAAAGAACAAAGTTACAAAAGCAGATTTGGAATGTCCCTCAGTCATTTTATCACCTAACAGTGATGAAAATACATTAGATAATCATAGAGATGTAAAAGAGGAGTGCACTGAAGATGTGGTCACATCAAATAAATCATTAGAAAATTGTAACCAAAAACCATATACAACGCATAAAAAGAAGCTTGCGAATTCGAATCAAAATCAAAATCATAAAAATCCTGCACCGTTTAAAATGTCAAATGAAATCGANCAAAGTCAAATTAAAATTAAACAAAGCGGGTGTTGGTAAAAGCTCAATTNAATATCGATCAGTATCTGGAGTCTGGTCTTCATCAGATTCATCACTGCCAATTAATTATNGATCGATCACACGAATACATCATCTGTTTTTTCAATTCATNNCAATGNTCTTCCCATAGACAAGNTAANGAATCATCATCCATGGTGATGGGNATAGNTGATGGGNATATGGTGATATAAGGCATATCATCATCATTAGTTAATAAT]
consensusID : consensus_5086#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 575 fasta sequence
[ACTCAGAACCAAAACTTACTTAACTCATGTAAAAGTATAAAGAGAAGAAAGANCAAAGTTCCAAAAGCAGATTTGGAATGTCCCTCAGTCATTTTATCACCTAACAGTGATGAAAATACATTAGATAATCATAGAGATGTAAAAGAGGAGTGCACTGAAGATGTGGTCACATCAAATAAATCATTAGAAAATTGTAACCAAAACACCATATACAACGCATAAAAAGAAGCTTGCGAATTCGAATCAAAATCAAAATCATAAAAATCCTGCCCCGTTTAAAATGTCAAATGAAATCGACAAAAGTCAAATTAAAATTAAACAAGCGGGTGTTGGTAAAAGCTCAATTAATAATCGATCAGTATCTGAAGTCTGTTTTTCATCAGATTCATCACTGCCAATTAATTATGATTCGATCAACACGAATACATCATCTGTTTTTTCAATTTCATCAAATTGTTCTTCCAATAGACAAAAGTTAAAGAATTCATCATCACATGTTGAATGGTAATAGTTGTATGGTATTATTGTTGATTATAATGCATTATTCTATTCATCTATTAAGTTTTAATAAATAA]
[-] EMBL CD075800 [ACTCAGAACCAAAACTTACTTAACTCATGTAAAAGTATAAAGAGAAGAAAGANCAAAGTTCCAAAAGCAGATTTGGAATGTCCCTCAGTCATTTTATCACCTAACAGTGATGAAAATACATTAGATAATCATAGAGATGTAAAAGAGGAGTGCACTGAAGATGTGGTCACATCAAATAAATCATTAGAAAATTGTAACCAAAACACCATATACAACGCATAAAAAGAAGCTTGCGAATTCGAATCAAAATCAAAATCATAAAAATCCTGCCCCGTTTAAAATGTCAAATGAAATCGACAAAAGTCAAATTAAAATTAAACAAGCGGGTGTTGGTAAAAGCTCAATTAATAATCGATCAGTATCTGAAGTCTGTTTTTCATCAGATTCATCACTGCCAATTAATTATGATTCGATCAACACGAATACATCATCTGTTTTTTCAATTTCATCAAATTGTTCTTCCAATAGACAAAAGTTAAAGAATTCATCATCACATGTTGAATGGTAATAGTTGTATGGTATTATTGTTGATTATAATGCATTATTCTATTCATCTATTAAGTTTTAATAAATAA]
consensusID : consensus_5086#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 352 fasta sequence
[AACAGAAGTATCAGAAAAGCATTATACAGTTTACTGAACCTAAGGATGGTTACAACATTCTGAAGCTTTCTAGAAGTTCATCAGTAGTGATGGATAAGGAAGTTAAATTGAATGAAGAAGAGCTTGTTTCTGAGCTTACAACAGGAAAAGTTATATGTGGAGGCATCGGTGCAGCACTGCGTTATCGAAGATTTTCACCCCTGGCAGAAAGTGGAAGTGCAGCTAGTTCAGCTTTGGACAATAGTTATATATGCAAATTAAAAACAGGAAATCTAAATCAAAATGAACCTACTGGCCAACAGACCAACAATATCACAGCAGTTTTGGATCATGAAACAATTTCGAACGAGGA]
[+] EMBL CD188028 [AACAGAAGTATCAGAAAAGCATTATACAGTTTACTGAACCTAAGGATGGTTACAACATTCTGAAGCTTTCTAGAAGTTCATCAGTAGTGATGGATAAGGAAGTTAAATTGAATGAAGAAGAGCTTGTTTCTGAGCTTACAACAGGAAAAGTTATATGTGGAGGCATCGGTGCAGCACTGCGTTATCGAAGATTTTCACCCCTGGCAGAAAGTGGAAGTGCAGCTAGTTCAGCTTTGGACAATAGTTATATATGCAAATTAAAAACAGGAAATCTAAATCAAAATGAACCTACTGGCCAACAGACCAACAATATCACAGCAGTTTTGGATCATGAAACAATTTCGAACGAGGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5086#0 CGAGGCGGCACGAGGTGGATAAGGAAGTTAAATTGAATTAAGAAGAGCTTGTTTCCGAGC 60
consensus_5086#1 ------------------------------------------------------------
consensus_5086#2 ------------------------------------------------------------
consensus_5086#0 TTACAACAGGAAAAGTTATATGTGGAGGCATCGGTGCAGCACTGCGTTATCGAAGATTTT 120
consensus_5086#1 ------------------------------------------------------------
consensus_5086#2 ------------------------------------------------------------
consensus_5086#0 CACCCCTGGCAGAAAGTGGAAGTGCAGCTAGTTCAGCTTTGGACAATAGTTATATATGCA 180
consensus_5086#1 ------------------------------------------------------------
consensus_5086#2 ------------------------------------------------------------
consensus_5086#0 AATTAAAAACAGGAAATCTAAATCAAAATGAACCTACTGGCCAACAGACCAACAATATCA 240
consensus_5086#1 ------------------------------------------------------------
consensus_5086#2 ------------------------------------------------------------
consensus_5086#0 CAGCAGTTTTGGATCATGAAACAATTTCGAACGAGGAATTTTATTTACGTAAGGAATGTG 300
consensus_5086#1 ------------------------------------------------------------
consensus_5086#2 ------------------------------------------------------------
consensus_5086#0 ATATCGTTTTGAAAGAACTCGCCGAGTGGAGAAAACTACACTCAGAACCAAAACT-ACTT 359
consensus_5086#1 ---------------------------------------ACTCAGAACCAAAACTTACTT 21
consensus_5086#2 ------------------------------------------------------------
consensus_5086#0 AACTCATGTAAAAGTATAAAGAGAAGAAAGAACAAAGTTACAAAAGCAGATTTGGAATGT 419
consensus_5086#1 AACTCATGTAAAAGTATAAAGAGAAGAAAGANCAAAGTTCCAAAAGCAGATTTGGAATGT 81
consensus_5086#2 AACAGAAGTATCAG-AAAAGCATTATACAGTTTACTGAACCTAAGG-ATGGTTACAACAT 58
*** * *** ** * ** * * * ** * * * ** * * ** ** *
consensus_5086#0 CCCTCAGTCATTTTATCACCTAACAGTGATGAAAATACATTAGATAATCATAGAGATGTA 479
consensus_5086#1 CCCTCAGTCATTTTATCACCTAACAGTGATGAAAATACATTAGATAATCATAGAGATGTA 141
consensus_5086#2 TCTGAAGCTTTCTAGAAGTTCATCAGTAGTGA---TGGATAAGGAAGTTA----AATTGA 111
* ** * * * **** *** * ** ** * * * ** *
consensus_5086#0 AAAGAGGAGTGCACTGAAGATGTGGTCACATCAAATAAATCATTAGAAAATTGTAACCAA 539
consensus_5086#1 AAAGAGGAGTGCACTGAAGATGTGGTCACATCAAATAAATCATTAGAAAATTGTAACCAA 201
consensus_5086#2 ATGAAGAAGAGC-TTGTTTCTGAGCTTACAACAGGAAAA--GTTATA----TGTGGAGGC 164
* ** ** ** ** ** * * *** ** *** *** * ***
consensus_5086#0 AA-ACCATATACAACGCATAAAAAGAAGCTTGCGAATTCGAATCAAAATCAAAATCATAA 598
consensus_5086#1 AACACCATATACAACGCATAAAAAGAAGCTTGCGAATTCGAATCAAAATCAAAATCATAA 261
consensus_5086#2 ATCGGTGCA-GCACTGCGTTATCGAAGATTTTCACCCCTGGCAGAAAGTGGAAGTGCAGC 223
* * ** ** * * * ** * * *** * ** *
consensus_5086#0 AAATCCTGCACCGTTTAA-AATGTCAAATGAAATCGANCAAAGTCAAATTAAAATTAAAC 657
consensus_5086#1 AAATCCTGCCCCGTTTAA-AATGTCAAATGAAATCGACAAAAGTCAAATTAAAATTAAAC 320
consensus_5086#2 TAGTTCAGCTTTGGACAATAGTTATATATGCAAATTAAAAACAGGAAATCTAAATCAAA- 282
* * * ** * ** * * * *** ** * ** **** **** ***
consensus_5086#0 AAAGCGGGTGTTGGTAAAAGCTCAATTNAATATCGATCAGTATCTGGAGTCTGGTCTTCA 717
consensus_5086#1 AA-GCGGGTGTTGGTAAAAGCTCAATTAATAATCGATCAGTATCTGAAGTCTGTTTTTCA 379
consensus_5086#2 -ATGAACCTACTGGCCAACAGACCAACAATATCACAGCAGT-TTTGGATCATGAAACAAT 340
* * * *** ** * * * * **** * ** * **
consensus_5086#0 TCAGATTCATCACTGCCAATTAATTATNGATCGATCA-CACGAATACATCATCTGTTTTT 776
consensus_5086#1 TCAGATTCATCACTGCCAATTAATTATGATTCGATCAACACGAATACATCATCTGTTTTT 439
consensus_5086#2 TTCGAACGAGGA------------------------------------------------ 352
* ** * *
consensus_5086#0 TCAATT-CATNNCAATGNTCTTCCCATAGACAA--GNTAANGAAT-CATCATC-CATGGT 831
consensus_5086#1 TCAATTTCATCAAATTGTTCTTCCAATAGACAAAAGTTAAAGAATTCATCATCACATGTT 499
consensus_5086#2 ------------------------------------------------------------
consensus_5086#0 GA-TGGGNATAGNTG-ATGGGNATATGGTGATATAAGGCATATCATCATCATTAGTTAAT 889
consensus_5086#1 GAATGGTAATAGTTGTATGGTATTATTGTTGATTATAATGCATTATTCTATTCATCTATT 559
consensus_5086#2 ------------------------------------------------------------
consensus_5086#0 AAT------------- 892
consensus_5086#1 AAGTTTTAATAAATAA 575
consensus_5086#2 ----------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||