These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5087#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 965 fasta sequence [TCGGCACGAGGCTATTCAACAAAACACCATGGCAACCAAACGATTAGTTTAACGAAAAAAACGTGACATATAACAAACAACACCATGAATTGTTTGTGTACATGTTTTGGTATAGATTAGAATTGTTTTATTTGTCATGGTTACTGTTGGACTCTTTTTTCGCATCTTGTCAGCATTTTTTTGTTAACTTACTTCGTTTACTTTATTCCTTGAGATTTTTCTGATCAAATAAGCTGGCGCGTGTATGTACACGATAGTGTAGTATGTAGGTAACTTTTCTTCCTCACCGTCAATGTCATGATAGTGTTGATTCTCTCATGGATTTGTATGTTTGTATACATCACTTATGTTAGAGAGTTTTGTTAAATCTGATGAGCATCAAATGAGTAGGGTAATTTCTTCTTTTTTTTTAAGAATAGTTTTATATGTATGTAGGATCAATTTGTCCGTAGGCTTTTTTTCTATTCCATTTCATGTACTTCTGTTTAACATACAGTAAGAAAATATTTCACTTAACTATCTTGTTTGTCATTACTTCCTGGCCCTTGATCTTTATGGAGATTCGTAGCACTTGTATTAATCGGTCTAATTACTGATGTATGTACTTGCCAAATGTAAAAGATTATTTGTTTTGTAATATTCATGTGTTTATTTTGTTCATCTCTTTCCGGGTAAGAACAAACACATACATACATATGTGTGAACACATACTTGTCTTTATATATCTGATCTACGTGTCATATCTACTTATCATCACAAAAATATAAACAAGGTTCTTTATCTTCCATTGTGTCAAGTCCTCAGGAGTCTCTTCTTATATATGTTTATTCATTTACATATTAGTAAAGTGGTTCGGTATTGTTTGTTTGTTTTCTTCTTCACCAGATGATTGATTTCCTTTTTTTCATCGTTACTGCCATGAATATTGATCATATTTTGTATGTATGTATGTATGTAATTGTATC] [+] EMBL CD083263 [TCGGCACGAGGCTATTCAACAAAACACCATGGCAACCAAACGATTAGTTTAACGAAAAAAACGTGACATATAACAAACAACACCATGAATTGTTTGTGTACATGTTTTGGTATAGATTAGAATTGTTTTATTTGTCATGGTTACTGTTGGACTCTTTTTTCGCATCTTGTCAGCATTTTTTTGTTAACTTACTTCGTTTACTTTATTCCTTGAGATTTTTCTGATCAAATAAGCTGGCGCGTGTATGTACACGATAGTGTAGTATGTAGGTAACTTTTCTTCCTCACCGTCAATGTCATGATAGTGTTGATTCTCTCATGGATTTGTATGTTTGTATACATCACTTATGTTAGAGAGTTTTGTTAAATCTGATGAGCATCAAATGAGTAGGGTAATTTCTTCTTTTTTTTTAAGAATAGTTTTATATGTATGTAGGATCAATTTGTCCGTAGGCTTTTTTTCTATTCCATTTCATGTACTTCTGTTTAACATACAGTAAGAAAATATTTCACTTAACTATCTTGTTTGTCATTACTTCCTGGCCCTTGATCTTTATGGAGATTCGTAGCACTTGTATTAATCGGTCTAATTACTGATGTATGTACTTGCCAAATGTAAAAGATTATTTGTTTTGT ] [-] EMBL CD076833 [ TGAGCATCAAATGAGTAGGGTAATTTCTTCTTTTTTTTTAAGAATAGTTTTATATGTATGTAGGATCAATTTGTCCGTAGGCTTTTTTTCTATTCCATTTCATGTACTTCTGTTTAACATACAGTAAGAAAATATTTCACTTAACTATCTTGTTTGTCATTACTTCCTGGCCCTTGATCTTTATGGAGATTCGTAGCACTTGTATTAATCGGTCTAATTACTGATGTATGTACTTGCCAAATGTAAAAGATTATTTGTTTTGTAATATTCATGTGTTTATTTTGTTCATCTCTTTCCGGGTAAGAACAAACACATACATACATATGTGTGAACACATACTTGTCTTTATATATCTGATCTACGTGTCATATCTACTTATCATCACAAAAATATAAACAAGGTTCTTTATCTTCCATTGTGTCAAGTCCTCAGGAGTCTCTTCTTATATATGTTTATTCATTTACATATTAGTAAAGTGGTTCGGTATTGTTTGTTTGTTTTCTTCTTCACCAGATGATTGATTTCCTTTTTTTCATCGTTACTGCCATGAATATTGATCATATTTTGTATGTATGTATGTATGTAATTGTATC] consensusID : consensus_5087#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 450 fasta sequence [CTTGAGTTGGAAGCTTGCAAGCTTCGGTCGATTATGTTCCTCAATTTTTTCTATTTCCGTTTTTACAATTTCGCTTCTTTTTCGTGCATGTTCTACACAGAAGTGTCTATGTAAAGGTCATTGTTTTTTGTGATTATCCCATGAATGTCTACTTCTTCTTTGCTTATTTATTTGATTTTAGTAGATACACACACTTTGTATGTAACAATTCTGCTGGGTTTTTTTTAAATTCTATTTAATTAAATTATCTGATGTTTTTCGTCGAAAATTTATTTGAGTTCTATATACTTCGTAGGGTTAGGGGGTAAACCGTTTGACTGCTTTGTATTCAACAAAACACCATGGCAACCAAACGAATAGTTTAACGAAAAAAAAGTGACATATAACAAACAACACCATGAATTGTTTGTGTACATGTTTGGGTATAGATTAGAATTGTTTTATTTGTCG] [+] EMBL CD060600 [CTTGAGTTGGAAGCTTGCAAGCTTCGGTCGATTATGTTCCTCAATTTTTTCTATTTCCGTTTTTACAATTTCGCTTCTTTTTCGTGCATGTTCTACACAGAAGTGTCTATGTAAAGGTCATTGTTTTTTGTGATTATCCCATGAATGTCTACTTCTTCTTTGCTTATTTATTTGATTTTAGTAGATACACACACTTTGTATGTAACAATTCTGCTGGGTTTTTTTTAAATTCTATTTAATTAAATTATCTGATGTTTTTCGTCGAAAATTTATTTGAGTTCTATATACTTCGTAGGGTTAGGGGGTAAACCGTTTGACTGCTTTGTATTCAACAAAACACCATGGCAACCAAACGAATAGTTTAACGAAAAAAAAGTGACATATAACAAACAACACCATGAATTGTTTGTGTACATGTTTGGGTATAGATTAGAATTGTTTTATTTGTCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5087#0 TCGGCACGAGGCTATTCAACAAAACACCATGGCAACCAAACGATTAGTTTAACGAAAAAA 60 consensus_5087#1 ------------------------------------------------------------ consensus_5087#0 ACGTGACATATAACAAACAACACCATGAATTGTTTGTGTACATGTTTTGGTATAGATTAG 120 consensus_5087#1 ------------------------------------------------------------ consensus_5087#0 AATTGTTTTATTTGTCATGGTTACTGTTGGACTCTTTTTTCGCATCTTGTCAGCATTTTT 180 consensus_5087#1 --------------------------------CTTGAGTTGGAAGCTTGCAAGCTTCGGT 28 * ** * * **** *** * * consensus_5087#0 TTGTTAACTTACTTCGTTTACTTTATTCCTTGAGATTTTTCTGATCAAATAAGCTGGCGC 240 consensus_5087#1 CGATTATGTTCCTCAATTTTTTCTATTTCC----GTTTTTACAATTTCGCTT-CTTTTTC 83 *** ** ** *** * **** * ***** ** ** * consensus_5087#0 GTGTATGTACACGATAGTGTAGTATGTAGGTAACTTTTCTTCCTCACCGTCAATGTCATG 300 consensus_5087#1 GTGCATGTTCT--ACACAGAAGTGTCTATGTA-------------AAGGTCATTGTTTT- 127 *** **** * * * * *** * ** *** * **** *** * consensus_5087#0 ATAGTGTTGATTCTCTCATGGATTTGTATGTTTGTATACATCACTTATGTTAGAGAGTTT 360 consensus_5087#1 ----TTGTGATTATCCCATGAATGTCTACTTCTTCTTTGCTTATTTATTTGA-----TTT 178 * ***** ** **** ** * ** * * * * * **** * * *** consensus_5087#0 TGTTAAATCTGATGAGCATCAAATGAGTAGGGTAATTTCTTCTTTTTTTTTAAGAATAGT 420 consensus_5087#1 TAGTAGAT---ACACACACTTTGTATGTAACAATTCTGCTGGGTTTTTTTTAAATTCTAT 235 * ** ** * ** * *** * ** ********** * consensus_5087#0 TTTATATGTATGTAGGATCAATTTGTCCGTAGGCTTTTTTTCTATTCCATTTCATGTACT 480 consensus_5087#1 TTAATTAAATTATCTGATGTTTTTCGTCGAAAATTTATTT------GAGTTCTATATACT 289 ** ** * * *** *** ** * ** *** ** ** **** consensus_5087#0 TCTGTTTAACATACAGTAAGAAAATATTTCACTTAACTATCTTGT--TTGTCATTACTTC 538 consensus_5087#1 TC--------GTAGGGTTAGGGGGTAAACCGTTTGACTGCTTTGTATTCAACAAAACACC 341 ** ** ** ** ** * ** *** **** * ** ** * consensus_5087#0 CTGGCCCTTGATC------TTTATGGAGATTCGTAGCACTTGTATTAATCGGTCTAATTA 592 consensus_5087#1 ATGGCAACCAAACGAATAGTTTAACGAAAAAAAAGTGACATATAACAAACAACACCATGA 401 **** * * **** ** * ** * ** ** * ** * consensus_5087#0 CTGATGTATGTACTTGCC-AAATGTAAA---AGATTATTTGTTTTGTAATATTCATGTGT 648 consensus_5087#1 ATTGTTTGTGTACATGTTTGGGTATAGATTAGAATTGTTTTATTTGTCG----------- 450 * * * ***** ** * ** * *** *** ***** consensus_5087#0 TTATTTTGTTCATCTCTTTCCGGGTAAGAACAAACACATACATACATATGTGTGAACACA 708 consensus_5087#1 ------------------------------------------------------------ consensus_5087#0 TACTTGTCTTTATATATCTGATCTACGTGTCATATCTACTTATCATCACAAAAATATAAA 768 consensus_5087#1 ------------------------------------------------------------ consensus_5087#0 CAAGGTTCTTTATCTTCCATTGTGTCAAGTCCTCAGGAGTCTCTTCTTATATATGTTTAT 828 consensus_5087#1 ------------------------------------------------------------ consensus_5087#0 TCATTTACATATTAGTAAAGTGGTTCGGTATTGTTTGTTTGTTTTCTTCTTCACCAGATG 888 consensus_5087#1 ------------------------------------------------------------ consensus_5087#0 ATTGATTTCCTTTTTTTCATCGTTACTGCCATGAATATTGATCATATTTTGTATGTATGT 948 consensus_5087#1 ------------------------------------------------------------ consensus_5087#0 ATGTATGTAATTGTATC 965 consensus_5087#1 ----------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||