These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5089#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 594 fasta sequence [CACAGAATTGTTACTGGCCTTTCTAGAAGAAGAATCATCTCCCCGTATCAACGATTATACTGCCTATGGATTATTATACACCTGATATGGTCAGTTCAACGAATAATTCCAGAAAGCAGGTGAACACATGTAATACGGAAGATGAGAAGTATCCTGTTAGCACAATTATAACAGGTTCTACTTCACTATCCAATCCTCCTAAATCTGATAATGATTCAAATTTATCAGATCATAAACCGTATTTCTATATGCTTTAACAATGACTACATCTAATTTATTTTCATTAAAGTTTTCTTCTAGCTGAAACGGAACATCTTCGAACTGAACTTAATCGAACTATTCAAAAAGAATTGGCTACAAAACAAGAGATGGAACAATTGAATAAATCACTTATCAGCTATCAAGAATTAACCAATGAATTAAATCAAATAAAAAGTGTTAACCAACAATTACGTGAACAAATTCTTCGACTTGAAACAAAAGTAAAAAAATCGTGATACAGAAAATAATGGACTTCGTGATCGTCTTGCTAAAATGGCTGTAGATACAGATTCACGAATTGATAAAGTACTAATTAAGAACTTGCTACTTAGC] [+] EMBL CD152318 [CACAGAATTGTTACTGGCCTTTCTAGAAGAAGAATCATCTCCCCGTATCAACGATTATACTGCCTATGGATTATTATACACCTGATATGGTCAGTTCAACGAATAATTCCAGAAAGCAGGTGAACACATGTAATACGGAAGATGAGAAGTATCCTGTTAGCACAATTATAACAGGTTCTACTTCACTATCCAATCCTCCTAAATCTGATAATGATTCAAATTTATCAGATCATAAACCGTATTTCTATATGCTTTAACAATGACTACATCTAATTTATTTTCATTAAAGTTTTCTTCTAGCTGAAACGGAACATCTTCGAACTGAACTTAATCGAACTATTCAAAAAGAATTGGCTACAAAACAAGAGATGGAACAATTGAATAAATCACTTATCAGCTATCAAGAATTAACCAATGAATT ] [+] EMBL CD139886 [ GGCTACAAAACAAGAGATGGAACAATTGAATAAATCACTTATCAGCTATCAAGAATTAACCAATGAATTAAATCAAATAAAAAGTGTTAACCAACAATTACGTGAACAAATTCTTCGACTTGAAACAAAAGTAAAAAAATCGTGATACAGAAAATAATGGACTTCGTGATCGTCTTGCTAAAATGGCTGTAGATACAGATTCACGAATTGATAAAGTACTAATTAAGAACTTGCTACTTAGC] consensusID : consensus_5089#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 353 fasta sequence [AAAGTCCTTTGCTCAATTGAAAGATTCATATGCCACAGCGGATACACAATTGCAGACAGCTTATTCTGAACGAGACGATGCTTTAAAACACTTGGAGGCTAGTCGACGTGAAGTTCTTGATTTAAAAGAGAGTTTAAAAACTCTACAAACAGTTTTAGACAATTTTCAGCGCAATCAGGAAGCTACTCTTCTAGCTGAAACGGAACATCTTCGAACTGAACTTAATCGAACTATTCAAAAAGAATTGGCTACAAAACAAGAGATGGAACAATTAAATAAATCACTTATCAGCTATCAAGAATTAACCAATGAATTAAATCAAATAAAAAGTGTTAACCAACAATTACGTGAAC] [+] EMBL AI976813 [AAAGTCCTTTGCTCAATTGAAAGATTCATATGCCACAGCGGATACACAATTGCAGACAGCTTATTCTGAACGAGACGATGCTTTAAAACACTTGGAGGCTAGTCGACGTGAAGTTCTTGATTTAAAAGAGAGTTTAAAAACTCTACAAACAGTTTTAGACAATTTTCAGCGCAATCAGGAAGCTACTCTTCTAGCTGAAACGGAACATCTTCGAACTGAACTTAATCGAACTATTCAAAAAGAATTGGCTACAAAACAAGAGATGGAACAATTAAATAAATCACTTATCAGCTATCAAGAATTAACCAATGAATTAAATCAAATAAAAAGTGTTAACCAACAATTACGTGAAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5089#0 CACAGAATTGTTACTGGCCTTTCTAGAAGAAGAATCATCTCCCCGTATCAACGATTATAC 60 consensus_5089#1 ------------------------------------------------------------ consensus_5089#0 TGCCTATGGATTATTATACACCTGATATGGTCAGTTCAACGAATAATTCCAGAAAGCAGG 120 consensus_5089#1 ----------------------------------------AAAGTCCTTTGCTCAATTGA 20 ** * * * consensus_5089#0 TGAACACATGTAATACGGAAGATGAGAAGTATCCTGTTAGCACAATTATAAC-AGGTTCT 179 consensus_5089#1 AAGATTCATATGCCACAGCGGATACACAAT-TGCAGACAGCTTATTCTGAACGAGACGAT 79 * *** * ** * *** * * * * * *** * * *** ** * consensus_5089#0 ACTTCACTATCCAATCCTCCTAAATCTGATAATGATTCAAATTTATCAGATCATAAACCG 239 consensus_5089#1 GCTTTAAAACACTTGGAGGCTAGTCGACGTGAAGTTCTTGATTTAAAAGAGAGTTTAAAA 139 *** * * * *** * * * * ***** *** * * consensus_5089#0 TATTTCTATATGCTTTAACAATGACTACATCTAATTTATTTTCATTAAAGTTTTCTTCTA 299 consensus_5089#1 ACTCTACAAACAGTTTTA----GACAATTTTCAGCGCAA--TCAGGAAGCTACTCTTCTA 193 * * * * *** * *** * * * * *** ** * ******* consensus_5089#0 GCTGAAACGGAACATCTTCGAACTGAACTTAATCGAACTATTCAAAAAGAATTGGCTACA 359 consensus_5089#1 GCTGAAACGGAACATCTTCGAACTGAACTTAATCGAACTATTCAAAAAGAATTGGCTACA 253 ************************************************************ consensus_5089#0 AAACAAGAGATGGAACAATTGAATAAATCACTTATCAGCTATCAAGAATTAACCAATGAA 419 consensus_5089#1 AAACAAGAGATGGAACAATTAAATAAATCACTTATCAGCTATCAAGAATTAACCAATGAA 313 ******************** *************************************** consensus_5089#0 TTAAATCAAATAAAAAGTGTTAACCAACAATTACGTGAACAAATTCTTCGACTTGAAACA 479 consensus_5089#1 TTAAATCAAATAAAAAGTGTTAACCAACAATTACGTGAAC-------------------- 353 **************************************** consensus_5089#0 AAAGTAAAAAAATCGTGATACAGAAAATAATGGACTTCGTGATCGTCTTGCTAAAATGGC 539 consensus_5089#1 ------------------------------------------------------------ consensus_5089#0 TGTAGATACAGATTCACGAATTGATAAAGTACTAATTAAGAACTTGCTACTTAGC 594 consensus_5089#1 ------------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||