These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5091#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 695 fasta sequence [NATCTTGGCACGAGGAACGTCGTTAAAACGAAACGGTGGGCGGCTTTGTAAGGCTCTGACATTTTTACCGTGTCCACGCCGTTTTTACCACGAGGTAACACTAAGATCACACAGCCAAGTTATTTCTACTGAAAGCTATCAAGAGCTCCAAAGTGTTTTACTTTTCAATGAATTCTACTCATCCCCTCCATTCATCATACTCAAATTTGTTGTTCAGACAGTGGCAAACTGCAAACTATAAGGTCAGTGCCGAGAATCTTGTGTATCCAATTTTCCTCAGCCAAGACCCAGATTGTGATAAAATAATTACTAGCCTAATAGACCAACGTCGAATAGGATGCAACCGAATCATCGAGTTCTTAACACCTTTGGTGGCCAAGCAACTAAAATCTGTATTGTTGTTTGGGACAATCAGTAAAGACCAAAAAGATGCTACAGGATCAGCTTGTGATACACCAAATTCACCAGTCATTCAGGCAATCAAGTTGCTGAAGTCAAAATTTCCGGATTTAATAGTGATTTGTGATGTTTGTTTGTGTGCATACACTGACAGTGGTCATTGTGGTATTTTACGTGATGACGGCTGCCTTGACGTACCTAGAACTCTTGAACGTTTAGCGGAAATATCTAAACGATTTGCCCTAGAAGGAGCTGATGTTATTGCCCCTTCTGACATGATGGATGGACGTGTGAAA] [+] EMBL CD080723 [NATCTTGGCACGAGGAACGTCGTTAAAACGAAACGGTGGGCGGCTTTGTAAGGCTCTGACATTTTTACCGTGTCCACGCCGTTTTTACCACGAGGTAACACTAAGATCACACAGCCAAGTTATTTCTACTGAAAGCTATCAAGAGCTCCAAAGTGTTTTACTTTTCAATGAATTCTACTCATCCCCTCCATTCATCATACTCAAATTTGTTGTTCAGACAGTGGCAAACTGCAAACTATAAGGTCAGTGCCGAGAATCTTGTGTATCCAATTTTCCTCAGCCAAGACCCAGATTGTGATAAAATAATTACTAGCCTAATAGACCAACGTCGAATAGGATGCAACCGAATCATCGAGTTCTTAACACCTTTGGTGGCCAAGCAACTAAAATCTGTATTGTTGTTTGGGACAATCAGTAAAGACCAAAAAGATGCTACAGGATCAGCTTGTGATACACCAAATTCACCAGTCATTCAGGCAATCAAGTTGCTGAAGTCAAAATTTCCGGATTTAATAGTGATTTGTGATGTTTGTTTGTGTGCATACACTGACAGTGGTCATTGTGGTATTTTACGTGATGACGGCTGCCTTGACGTACCTAGAACTCTTGAACGTTTAGCGGAAATATCTAAACGATTTGCCCTAGAAGGAGCTGATGTTATTGCCCCTTCTGACATGATGGATGGACGTGTGAAA] consensusID : consensus_5091#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 283 fasta sequence [CGGCACGAGGATCATACTCAAATTTGTTGTTCAGACAGTGGCAAACTGCAAACTATAAGGTCAGTGCCGAGAATCTTGTGTATCCAATTTTCCTCAGGTATATTATATTGTTTTCTCATTCATTTAGCCAAGACCCAGATTGTGATAAAATAATTACTAGCCTAATAGACCAACGTCGAATAGGATGCAACCGAATCATCGAGTTCTTAACACCTTTGGTGGCCAAGCAACTAAAATCTGTATTGTTGTTTGGGACAATCAGTAAAGACCAAAAAGATGCTAC] [+] EMBL CD077952 [CGGCACGAGGATCATACTCAAATTTGTTGTTCAGACAGTGGCAAACTGCAAACTATAAGGTCAGTGCCGAGAATCTTGTGTATCCAATTTTCCTCAGGTATATTATATTGTTTTCTCATTCATTTAGCCAAGACCCAGATTGTGATAAAATAATTACTAGCCTAATAGACCAACGTCGAATAGGATGCAACCGAATCATCGAGTTCTTAACACCTTTGGTGGCCAAGCAACTAAAATCTGTATTGTTGTTTGGGACAATCAGTAAAGACCAAAAAGATGCTAC] consensusID : consensus_5091#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 273 fasta sequence [ACGAAACGGTGGGCGGCTTTGAAAGGCTCTGACATTTTTACCGTGTCCACGCCGTTTTTACCACGAGGTAACACTAAGATCACACAGCCAAGTTACTTCTACTGAAAGCTATCAAGAGCTCCAAAGTGTTTTACTTTTCAATGAATTCTACTCATCCCCTCCATTCATCATACTCAAATTTGTTGTTCAGACAGTGGCAAACTGCAAACTATAAGGTCAGTGCCGAGAATCTTGTGTATCCAATTTTCCTCAGGTATATTATATTGTTTTCTC] [+] EMBL CD183334 [ACGAAACGGTGGGCGGCTTTGAAAGGCTCTGACATTTTTACCGTGTCCACGCCGTTTTTACCACGAGGTAACACTAAGATCACACAGCCAAGTTACTTCTACTGAAAGCTATCAAGAGCTCCAAAGTGTTTTACTTTTCAATGAATTCTACTCATCCCCTCCATTCATCATACTCAAATTTGTTGTTCAGACAGTGGCAAACTGCAAACTATAAGGTCAGTGCCGAGAATCTTGTGTATCCAATTTTCCTCAGGTATATTATATTGTTTTCTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5091#0 NATCTTGGCACGAGGAACGTCGTTAAAACGAAACGGTGGGCGGCTTTGTAAGGCTCTGAC 60 consensus_5091#2 ---------------------------ACGAAACGGTGGGCGGCTTTGAAAGGCTCTGAC 33 consensus_5091#1 ----------------------------CGGCACGAGGATCATACTCAAA----TTTGTT 28 ** *** * * * * * ** consensus_5091#0 ATTTTTACCGTGTCCACGCCGTTTTTACCACGAGGTAACACTAAGATCA-CACAGCCAAG 119 consensus_5091#2 ATTTTTACCGTGTCCACGCCGTTTTTACCACGAGGTAACACTAAGATCA-CACAGCCAAG 92 consensus_5091#1 GTTCAGACAGTGGCAA----------ACTGCAAACTA----TAAGGTCAGTGCCGAGAAT 74 ** ** *** * * ** * * ** **** *** * * ** consensus_5091#0 TTATTTCTACTGAAAGCTATCAAGAGCTCCAAAGTGTTTTACTTTTCAATGAATTCTACT 179 consensus_5091#2 TTACTTCTACTGAAAGCTATCAAGAGCTCCAAAGTGTTTTACTTTTCAATGAATTCTACT 152 consensus_5091#1 CTTGTGTATCCAATTTTCCTCAGGTATATTATATTGTTTTCTCATTCATTTAGCCAAGAC 134 * * * * *** * * * ****** **** * * consensus_5091#0 CATCCCCTCCATTCATCATACTCAAATTTGTTGTTCAGACAGTGG-CAAACTGCAAACTA 238 consensus_5091#2 CATCCCCTCCATTCATCATACTCAAATTTGTTGTTCAGACAGTGG-CAAACTGCAAACTA 211 consensus_5091#1 CCAGATTGTGATAAAATAATTACTAGCCTAATAGACCAACGTCGAATAGGATGCAACCGA 194 * ** * * * * * * * ** * * ***** * * consensus_5091#0 TAAGGTCAGTGCCGAGAATCTTGTGTATCCAATTTTCCTCAGCCAAGACCCAGATTGTGA 298 consensus_5091#2 TAAGGTCAGTGCCGAGAATCTTGTGTATCCAATTTTCCTCAGGTATA--TTATATTGTTT 269 consensus_5091#1 ATCATCGAGTTCTTAACACCTTTGGTGGCCAAG------CAACTAAAATCTGTATTGTTG 248 *** * * * *** ** **** ** * ***** consensus_5091#0 TAAAATAATTACTAGCCTAATAGACCAACGTCGAATAGGATGCAACCGAATCATCGAGTT 358 consensus_5091#2 TCTC-------------------------------------------------------- 273 consensus_5091#1 TTTGGGACAATCAGTAAAGACCAAAAAGATGCTAC------------------------- 283 * consensus_5091#0 CTTAACACCTTTGGTGGCCAAGCAACTAAAATCTGTATTGTTGTTTGGGACAATCAGTAA 418 consensus_5091#2 ------------------------------------------------------------ consensus_5091#1 ------------------------------------------------------------ consensus_5091#0 AGACCAAAAAGATGCTACAGGATCAGCTTGTGATACACCAAATTCACCAGTCATTCAGGC 478 consensus_5091#2 ------------------------------------------------------------ consensus_5091#1 ------------------------------------------------------------ consensus_5091#0 AATCAAGTTGCTGAAGTCAAAATTTCCGGATTTAATAGTGATTTGTGATGTTTGTTTGTG 538 consensus_5091#2 ------------------------------------------------------------ consensus_5091#1 ------------------------------------------------------------ consensus_5091#0 TGCATACACTGACAGTGGTCATTGTGGTATTTTACGTGATGACGGCTGCCTTGACGTACC 598 consensus_5091#2 ------------------------------------------------------------ consensus_5091#1 ------------------------------------------------------------ consensus_5091#0 TAGAACTCTTGAACGTTTAGCGGAAATATCTAAACGATTTGCCCTAGAAGGAGCTGATGT 658 consensus_5091#2 ------------------------------------------------------------ consensus_5091#1 ------------------------------------------------------------ consensus_5091#0 TATTGCCCCTTCTGACATGATGGATGGACGTGTGAAA 695 consensus_5091#2 ------------------------------------- consensus_5091#1 ------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||