These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5094#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 626 fasta sequence [TGGATAAATAATAATACTACTAGACTGGCTCAGGAACCGATATGTGGCCAATGACCTTGAGCAGAGGAATAACTCATCAAAATTATATTGCCTAAATTTGTAATTTACAATTACTTTGTATCCGCTTCTCAACAACACATGATCTATTTGATTTCCTGGGATATCATCTCTCATTTTTTTTTTGTCTTCATATGTGCTTTAGTGTGTATGGATATCAGTCTCTTTTTTCTATGTTTTCCAGTCTCTGTATTACACTGTGCATGTGATTAGTTTAAAATTTTCCATTATTGTTTTATAGGTGTCTAAATTCATCGGATCACACCGGGTTATGTTGGTCATGAAGAAGGTGGTCAGCTTACACGAGCTTTAGCTGCTTGTCCGAATGCAGTTGTTTTGTTTGATGAGACGGAGAAAGCTCATCCAGATGTTTTGACAGCTTTGNTACAGTTATTCGATGAAGTAGGTCACATTTATTCTATACAACTTTGTAGTGTATGCTTTTTTGATAAACTCAGATTAAAAATATACTTATAAGTATTCCGTAAATTAAATGGTGAACTAATAGACTTTGCTAGTGTTATAATGGACGGAAGTGAAAGTTCATTAGTAACTTTAGTATCCCTATC] [+] EMBL CD115989 [TGGATAAATAATAATACTACTAGACTGGCTCAGGAACCGATATGTGGCCAATGACCTTGAGCAGAGGAATAACTCATCAAAATTATATTGCCTAAATTTGTAATTTACAATTACTTTGTATCCGCTTCTCAACAACACATGATCTATTTGATTTCCTGGGATATCATCTCTCATTTTTTTTTTGTCTTCATATGTGCTTTAGTGTGTATGGATATCAGTCTCTTTTTTCTATGTTTTCCAGTCTCTGTATTACACTGTGCATGTGATTAGTTTAAAATTTTCCATTATTGTTTTATAGGTGTCTAAATTCATCGGATCACACCGGGTTATGTTGGTCATGAAGAAGGTGGTCAGCTTACACGAGCTTTAGCTGCTTGTCCGAATGCAGTTGTTTTGTTTGATGAGACGGAGAAAGCTCATCCAGATGTTTTGACAGCTTTGNTACAGTTATTCGATGAAGTAGGTCACATTTATTCTATACAACTTTGTAGTGTATGCTTTTTTGATAAACTCAGATTAAAAATATACTTATAAGTATTCCGTAAATTAAATGGTGAACTAATAGACTTTGCTAGTGTTATAATGGACGGAAGTGAAAGTTCATTAGTAACTTTAGTATCCCTATC] consensusID : consensus_5094#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 376 fasta sequence [CATGACCAACATAACCCGGTGGTGATCCGATGAATTTAGACACTTCATGTTTTTCTTGGTATTCTGACATATCAATACGTATAAAGCCCTTTTTAATGTCTTTATGTAAGTATGCTGCTACTTGTTTAGCCAACTCTGTTTTGCCTATACCGGAGGAACCAAGAAACAGAAATACAAGTGGATGATCTTCATCATACCAACCATTTTCTTTACGTCTTATAGCTGCACTAACAGTGCGAATAGCAGCTTCTTGACCAACAATTACTTTACGTAAACGATTTTCTAGTGGTTGAAGGCGTCTTTCCTCTCGCTCTTTGGCAGCCACTCCTTCTGCCTTCGAATTCCAGCAATAAATGAACCAATTTGGAGTCATTTA] [-] EMBL CD181208 [CATGACCAACATAACCCGGTGGTGATCCGATGAATTTAGACACTTCATGTTTTTCTTGGTATTCTGACATATCAATACGTATAAAGCCCTTTTTAATGTCTTTATGTAAGTATGCTGCTACTTGTTTAGCCAACTCTGTTTTGCCTATACCGGAGGAACCAAGAAACAGAAATACAAGTGGATGATCTTCATCATACCAACCATTTTCTTTACGTCTTATAGCTGCACTAACAGTGCGAATAGCAGCTTCTTGACCAACAATTACTTTACGTAAACGATTTTCTAGTGGTTGAAGGCGTCTTTCCTCTCGCTCTTTGGCAGCCACTCCTTCTGCC ] [+] EMBL CD130631 [ TTACTTTACGTAAACGATTTTCTAGTGGTTGAAGGCGTCTTTCCTCTCGCTCTTTGGCAGCCACTTCTTCTGCCTTCGAATTCCAGCAATAAATGAACCAATTTGGAGTCATTTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5094#0 TGGATAAATAATAATACTACTAGACTGGCTCAGGAACCGATATGTGGCCAATGACCTTGA 60 consensus_5094#1 ------------------------------------------------------------ consensus_5094#0 GCAGAGGAATAACTCATCAAAATTATATTGCCTAAATTTGTAATTTACAATTACTTTGTA 120 consensus_5094#1 ------------------------------------------------------------ consensus_5094#0 TCCGCTTCTCAACAACACATGATCTATTTGATTTCCTGGGATATCATCTCTCATTTTTTT 180 consensus_5094#1 -----------------CATGACCAACATAACCCGGTGGTGA------TCCGATGAATTT 37 ***** * * * * *** ** ** *** consensus_5094#0 TTTGTCTTCATATGTGCTTTAGTGTGTATGGATATCAGTCTCTTTTTTCTATGTTTTCCA 240 consensus_5094#1 AGACACTTCATGTTTTTCTTGGTATTCTGACATATCAATACGTATAA--AGCCCTTTTTA 95 ****** * * ** ** * ****** * * * *** * consensus_5094#0 GTCTCTGTATTACACTGTGCATGTGATTAGTTTAAAATTTTCCATTATTGTTTTATAGGT 300 consensus_5094#1 ATGTCTTTATGTAAGTATGC-TGCTACTTGTTTAG------CCAACTCTGTTTT------ 142 * *** *** * * *** ** * * ***** *** ****** consensus_5094#0 GTCTAAATTCATCGGATCACACCGGGTTATGTTGGT-CATGAAGAAGGTGGTCAGCTTAC 359 consensus_5094#1 GCCTA----TACCGGAGGA-ACCAAGAAACAGAAATACAAGTGGATGATCTTCATCATAC 197 * *** * **** * *** * * * ** * ** * * *** * *** consensus_5094#0 ACGAGCTTTAGCTGCTTGTCCGAATGCAGTTGTTTTGTTTGATGAGACGGAGAAAGCTCA 419 consensus_5094#1 -CAACCATTTTCTTTACGTCT---TATAGCTGCACTAACAGTGCGAATAGCAGCTTCTTG 253 * * * ** ** *** * ** ** * * * * ** consensus_5094#0 TCCAGATGTTTTGACAGCTTTGNTACAGTTATTCGATGAAGTAGGTCACATTTATTCTAT 479 consensus_5094#1 ACCAACAATTACTTTACGT---AAACGATTTTCTAGTGGTTGAAGGCGTCTTTCCTCT-C 309 *** ** * * ** ** * ** * * * *** *** consensus_5094#0 ACAACTTTGTAGTGTATGCTTTTTTGAT-AAACTCAGATTAAAAATATACTTATAAGTAT 538 consensus_5094#1 GCTCTTTGGCAGCCACTCCTTCTGCCTTCGAATTCCAGCAATAAATGAACCAATTTGGAG 369 * ** * ** * *** * * ** ** * **** ** ** * * consensus_5094#0 TCCGTAAATTAAATGGTGAACTAATAGACTTTGCTAGTGTTATAATGGACGGAAGTGAAA 598 consensus_5094#1 TCATTTA----------------------------------------------------- 376 ** * * consensus_5094#0 GTTCATTAGTAACTTTAGTATCCCTATC 626 consensus_5094#1 ---------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||