These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_51#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 461 fasta sequence [ATTTATTTCAAACGATGTAAACAAAGCCACGAATTGACTGCAGTGTGGAATTTTTGGTGGTGCCCTTTATAATAAGGGATGTGCCAACCAGTTTCTAAATTACCGTGTTTGCACAAGTCACACTTTGAGGGTTTTTGATAAATCGGACCACGATGTTGTAGTACAATTTGTCTGAAAGACTGCCACCTAGAAATTTGTTCTCCAAGTTCTGGACCTGATGAAAAACGGTATTTTTTGAATTCATCATTAGATACTATATAGCATTGTGGTCCAGACTTCATCGCCATATAGAGGAGGAATACATCGTCTTCTGACGAAGAATTTGTACAGAATTTCTGAACAGAGATTCCCAACTGATTTCCTAACACTTTAATGGGATCCCAAAACCATGATTTACGTAAGGTTGTAGACTCTTTACTGACAAAACAAAAGCCCCGGGAATTGAAATCTTTGTTGATCTG] [+] EMBL AI974981 [ATTTATTTCAAACGATGTAAACAAAGCCACGAATTGACTGCAGTGTGGAATTTTTGGTGGTGCCCTTTATAATAAGGGATGTGCCAACCAGTTTCTAAATTACCGTGTTTGCACAAGTCACACTTTGAGGGTTTTTGATAAATCGGACCACGATGTTGTAGTACAATTTGTCTGAAAGACTGCCACCTAGAAATTTGTTCTCCAAGTTCTGGACCTGATGAAAAACGGTATTTTTTGAATTCATCATTAGATACTATATAGCATTGTGGTCCAGACTTCATCGCCATATAGAGGAGGAATACATCGTCTTCTGACGAAGAATTTGTACAGAATTTCTGAACAGAGATTCCCAACTGATTTCCTAACACTTTAATGGGATCCCAAAACCATGATTTACGTAAGGTTGTAGACTCTTTACTGACAAAACAAAAGCCCCGGGAATTGAAATCTTTGTTGATCTG] consensusID : consensus_51#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 361 fasta sequence [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCTGCAAAAAGTTGCTTCAAACGATGTAAACAAAGCCACGAATTGACTGCAGTGTGGAATTTTTGGTGGTGCCCTTTATAATAAGGGATGTGCCAACCAGTTTCTAAATTACCGTGTATGCACAAGTCACACTTTGAGGGTTTCTGAAAGATAAAATGTAAACAAAATAAGAATTAGATATATATTTAGAGAATTTATCCAGATAAAGATGAACACGTACTGAAATTCGTGAAGTCAGCTAAAACTGCAGGACGGCTGGCTGTTTATTTGAACACAACCTTGGTACAGAGCAACCGGATATGTATGCTCCACACTTTGGCAGTCCAATTT] [+] EMBL AI394909 [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCTGCAAAAAGTTGCTTCAAACGATGTAAACAAAGCCACGAATTGACTGCAGTGTGGAATTTTTGGTGGTGCCCTTTATAATAAGGGATGTGCCAACCAGTTTCTAAATTACCGTGTATGCACAAGTCACACTTTGAGGGTTTCTGAAAGATAAAATGTAAACAAAATAAGAATTAGATATATATTTAGAGAATTTATCCAGATAAAGATGAACACGTACTGAAATTCGTGAAGTCAGCTAAAACTGCAGGACGGCTGGCTGTTTATTTGAACACAACCTTGGTACAGAGCAACCGGATATGTATGCTCCACACTTTGGCAGTCCAATTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_51#0 ----------------------------------------ATTTATTTCAAACGATGTAA 20 consensus_51#1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCTGCAAAAAGTTGCTTCAAACGATGTAA 60 * ** ************** consensus_51#0 ACAAAGCCACGAATTGACTGCAGTGTGGAATTTTTGGTGGTGCCCTTTATAATAAGGGAT 80 consensus_51#1 ACAAAGCCACGAATTGACTGCAGTGTGGAATTTTTGGTGGTGCCCTTTATAATAAGGGAT 120 ************************************************************ consensus_51#0 GTGCCAACCAGTTTCTAAATTACCGTGTTTGCACAAGTCACACTTTGAGGGTTTTTGATA 140 consensus_51#1 GTGCCAACCAGTTTCTAAATTACCGTGTATGCACAAGTCACACTTTGAGGGTTTCTGAAA 180 **************************** ************************* *** * consensus_51#0 AATCGGACCACGATGTTGTAGTACAATTTGTCTGAAAGACTGCCACCTAGAAATTTGTTC 200 consensus_51#1 GATAAAA---------TGTAA-ACAAAATAAGAATTAGATATATATTTAGAGAAT--TTA 228 ** * **** **** * *** * **** * * ** consensus_51#0 TCCAAGTTCTGGACCTGATGAAAAACGGTATTTTTTGAATTCATCATTAGATACTATATA 260 consensus_51#1 TCCAGAT---AAAGATGAACACGTACTGAAATTCGTGAAGTCAGCTAAAACTGCAGGACG 285 **** * * *** * ** * * ** **** *** * * * * * consensus_51#0 GC--ATTGTG-GTCCAGACTTCATCGCCATATAGAGGAGGAATACATCGTCTTCTGACGA 317 consensus_51#1 GCTGGCTGTTTATTTGAACACAACCTTGGTACAGAGCAACCGGATAT-GTATGCT--CCA 342 ** *** * ** * * ** **** * * ** ** * ** * * consensus_51#0 AGAATTTGTA-CAGAATTTCTGAACAGAGATTCCCAACTGATTTCCTAACACTTTAATGG 376 consensus_51#1 CACTTTGGCAGTCCAATTT----------------------------------------- 361 ** * * ***** consensus_51#0 GATCCCAAAACCATGATTTACGTAAGGTTGTAGACTCTTTACTGACAAAACAAAAGCCCC 436 consensus_51#1 ------------------------------------------------------------ consensus_51#0 GGGAATTGAAATCTTTGTTGATCTG 461 consensus_51#1 ------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||