These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5126#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 539 fasta sequence [TACGCAGTACGGTAATGCAGCTGCATGGCATGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAATCAATAAAGGAAGATAGTTTATTTGTTTAATCAAATCATAAGGGAATTTTAATCACAATATCTTTCGAAAATTCGTTTAAAGTAGTGCTTAGTATGTTTGTATTTCTGCTGGTATTTTTGCTTCATTGTATTATTTAATCAATTAAATAGAAGATTTTGGTTAGAAAACAAGTACATGTTTAATTAAAGCGTATCATGCCATTAAGTTAAGAAGTATCATAAAGTAACTTGATTAGATTCTGAAAAGATAAAATCAAGGAGATGTAGGAAATAACAGAAATCAATAATAACTTTAGTAGCTATGATTGTCAGTTGAGACAATAAAAATGATTTTAAGAGAATAACTGATACAATAAACACATGCAATTCAAGGATAAATATGTTCAACATAAATGAATTACAATAAAATAAATTTAAGAGTCAAAATCTTCAACTTAAATGAAAAATGTAATCCCACGAAATAACATTCAAGA] [+] EMBL AI977402 [TACGCAGTACGGTAATGCAGCTGCATGGCATGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAATCAATAAAGGAAGATAGTTTATTTGTTTAATCAAATCATAAGGGAATTTTAATCACAATATCTTTCGAAAATTCGTTTAAAGTAGTGCTTAGTATGTTTGTATTTCTGCTGGTATTTTTGCTTCATTGTATTATTTAATCAATTAAATAGAAGATTTTGGTTAGAAAACAAGTACATGTTTAATTAAAGCGTATCATGCCATTAAGTTAAGAAGTATCATAAAGTAACTTGATTAGATTCTGAAAAGATAAAATCAAGGAGATGTAGGAAATAACAGAAATCAATAATAACTTTAGTAGCTATGATTGTCAGTTGAGACAATAAAAATGATTTTAAGAGAATAACTGATACAATAAACACATGCAATTCAAGGATAAATATGTTCAACATAAATGAATTACAATAAAATAAATTTAAGAGTCAAAATCTTCAACTTAAATGAAAAATGTAATCCCACGAAATAACATTCAAGA] [+] EMBL AI976730 [ AAGGAAGATAGTTTATTTGTTTAATCAAATCATAAGGGAATTTTAATCACAATATCTTTCCAAAATTCCTTTAAAGTATTGCTTAATATGTTTGTATTTCTGCTGGTATTTTTGCTTCATTGTTTTATTTAATCAATTTAATTGA ] consensusID : consensus_5126#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 155 fasta sequence [AAGATAGTTTATTTGTTTAATCCAAATCATAAGGGAATTTTAATCACAATATCTTTCGAAAATTTCGTTTAAAGTAGTGCTTAGTATGTTTTGTATTTCCTGCTGGTANTTTTTGCCTTCATTTGTATTTANTTTAATTCAATTTAAATAAGAAG] [-] EMBL SM742 [AAGATAGTTTATTTGTTTAATCCAAATCATAAGGGAATTTTAATCACAATATCTTTCGAAAATTTCGTTTAAAGTAGTGCTTAGTATGTTTTGTATTTCCTGCTGGTANTTTTTGCCTTCATTTGTATTTANTTTAATTCAATTTAAATAAGAAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5126#0 TACGCAGTACGGTAATGCAGCTGCATGGCATGTTTTTTTTTTTTTTTTTTTTTTTTTTTT 60 consensus_5126#1 ------------------------------------------------------------ consensus_5126#0 TTTAAATCAATAAAGGAAGATAGTTTATTTGTTTAATC-AAATCATAAGGGAATTTTAAT 119 consensus_5126#1 ----------------AAGATAGTTTATTTGTTTAATCCAAATCATAAGGGAATTTTAAT 44 ********************** ********************* consensus_5126#0 CACAATATCTTTCGAAAATT-CGTTTAAAGTAGTGCTTAGTATGTTT-GTATTTC-TGCT 176 consensus_5126#1 CACAATATCTTTCGAAAATTTCGTTTAAAGTAGTGCTTAGTATGTTTTGTATTTCCTGCT 104 ******************** ************************** ******* **** consensus_5126#0 GGTATTTTTGCTTCATTGTATTATTTAATCAATTAAATAGAAGATTTTGGTTAGAAAACA 236 consensus_5126#1 GGTANTTTT---TGCCTTCATT-TGTATTTANTTTAATTCAA--TTTAAATAAGAAG--- 155 **** **** * * *** * ** * * ** *** ** *** * **** consensus_5126#0 AGTACATGTTTAATTAAAGCGTATCATGCCATTAAGTTAAGAAGTATCATAAAGTAACTT 296 consensus_5126#1 ------------------------------------------------------------ consensus_5126#0 GATTAGATTCTGAAAAGATAAAATCAAGGAGATGTAGGAAATAACAGAAATCAATAATAA 356 consensus_5126#1 ------------------------------------------------------------ consensus_5126#0 CTTTAGTAGCTATGATTGTCAGTTGAGACAATAAAAATGATTTTAAGAGAATAACTGATA 416 consensus_5126#1 ------------------------------------------------------------ consensus_5126#0 CAATAAACACATGCAATTCAAGGATAAATATGTTCAACATAAATGAATTACAATAAAATA 476 consensus_5126#1 ------------------------------------------------------------ consensus_5126#0 AATTTAAGAGTCAAAATCTTCAACTTAAATGAAAAATGTAATCCCACGAAATAACATTCA 536 consensus_5126#1 ------------------------------------------------------------ consensus_5126#0 AGA 539 consensus_5126#1 --- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||