These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5130#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 532 fasta sequence [GTTGAAGAAACCTAGACAAGAAAAGTTGTCTAAACAAGCTCTCGTCGAAACGTCGTTGGTCAATAACCTCTTTCATTCACCACAACATCTCTGTTGCAGAGGCGTGGGGTAGATCGATGTCATTGAGGAGGTAATCTAACCTTCGTCGATCGATTAGATCTCGGTGTTTAAGAATAGACCTTTACAGTGTTTCACAAGGTTCTGAGCGTCATAAGTGAACATACTATGTGCGATGTANCTGTTGGATTTGCGCGGTGGCGCGTTCGTCACTGTGAGGACTCGTGCACGTGTATAGGTCACGCCGTGCTCGTAGAAGTCAGCTTCTCTGTAGTAGAACCAGGCTTCTGTGTTGTCATTCGGGAATGGCATTAGCTCAAATGTAGATGGTTTCACAGTCTTGATCTTAAATAATTTGGGAGTCTGTTCGGTCCTGATGAAATAAAAGCCTAACAATGAACGAGAAAGAAATATCAAAAATATTTTTGAAAATGTCGCCCTATGTGAAAATTTAAGCCAAAAAGGTATATATAAA] [+] EMBL CD115663 [GTTGAAGAAACCTAGACAAGAAAAGTTGTCTAAACAAGCTCTCGTCGAAACGTCGTTGGTCAATAACCTCTTTCATTCACCACAACATCTCTGTTGCAGAGGCGTGGGGTAGATCGATGTCATTGAGGAGGTAATCTAACCTTCGTCGATCGATTAGATCTCGGTGTTTAAGAATAGACCTTTACAGTGTTTCACAAGGTTCTGAGCGTCATAAGTGAACATACTATGTGCGATGTANCTGTTGGATTTGCGCGGTGGCGCGTTCGTCACTGTGAGGACTCGTGCACGTGTATAGGTCACGCCGTGCTCGTAGAAGTCAGCTTCTCTGTAGTAGAACCAGGCTTCTGTGTTGTCATTCGGGAATGGCATTAGCTCAAATGTAGATGGTTTCACAGTCTTGATCTTAAATAATTTGGGAGTCTGTTCGGTCCTGATGAAATAAAAGCCTAACAATGAACGAGAAAGAAATATCAAAAATATTTTTGAAAATGTCGCCCTATGTGAAAATTTAAGCCAAAAAGGTATATATAAA] consensusID : consensus_5130#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 361 fasta sequence [GCGCGGTGGCGCGTTCGTCACTGTGAGGACTCGTGCACGTGTATAGGTCACGCCGTGCTCGTAGAAGTCAGCTTCTCTGTAGTAGAACCAGGCTTCTGTGTTGTCATTCAGGAATGGCATTAGCTCAAATGTAGATGGTTTCACAGTCTTGATCTTAAATAATTTGGGAGTCTGTTCGGTCTTGATGAAATAAAAGCATAACAATGAACGAGAAAGAAATATCCAAAAATATTTTTGAAAATGTCGCAAGTTTACTGTTTAGTGTACTAGGTGACGGCGGATTCACCACTGGAGTCTCCGAGCACATGCATTTGGATCCTGCGGTATAATTCGTACCAGCAGTCATCGACCTACTATTGCT] [+] EMBL CD128161 [GCGCGGTGGCGCGTTCGTCACTGTGAGGACTCGTGCACGTGTATAGGTCACGCCGTGCTCGTAGAAGTCAGCTTCTCTGTAGTAGAACCAGGCTTCTGTGTTGTCATTCAGGAATGGCATTAGCTCAAATGTAGATGGTTTCACAGTCTTGATCTTAAATAATTTGGGAGTCTGTTCGGTCTTGATGAAATAAAAGCATAACAATGAACGAGAAAGAAATATCCAAAAATATTTTTGAAAATGTCGCAAGTTTACTGTTTAGTGTACTAGGTGACGGCGGATTCACCACTGGAGTCTCCGAGCACATGCATTTGGATCCTGCGGTATAATTCGTACCA ] [-] EMBL CD127962 [ CGCGGTGGCGCGTTCGTCACTGTGAGGACTCGTGCACGTGTATAGGTCACGCCGTGCTCGTAGAAGTCAGCTTCTCTGTAGTAGAACCAGGCTTCTGTGTTGTCATTCAGGAATGGCATTAGCTCAAATGTAGATGGTTTAACAGTCTTGATCTTAAATAATTTGGGAGTCTGTTCGGTCATGATGAAATAAAAGCATAACAATGAACGAGAAAGAAATATCCAAAAATATTTTTGAAAATGTCGCAAGTTTACTGTTTAGTGTACTAGGTGACGGCGGGTTCACCACTGGAGTCTCCGAGCACA GCATTTGGATCCTGCGGTATAATTCGTAACAGCAGTCATCGACCTACTATTGCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5130#0 GTTGAAGAAACCTAGACAAGAAAAGTTGTCTAAACAAGCTCTCGTCGAAACGTCGTTGGT 60 consensus_5130#1 ------------------------------------------------------------ consensus_5130#0 CAATAACCTCTTTCATTCACCACAACATCTCTGTTGCAGAGGCGTGGGGTAGATCGATGT 120 consensus_5130#1 ------------------------------------------------------------ consensus_5130#0 CATTGAGGAGGTAATCTAACCTTCGTCGATCGATTAGATCTCGGTGTTTAAGAATAGACC 180 consensus_5130#1 ------------------------------------------------------------ consensus_5130#0 TTTACAGTGTTTCACAAGGTTCTGAGCGTCATAAGTGAACATACTATGTGCGATGTANCT 240 consensus_5130#1 ------------------------------------------------------------ consensus_5130#0 GTTGGATTTGCGCGGTGGCGCGTTCGTCACTGTGAGGACTCGTGCACGTGTATAGGTCAC 300 consensus_5130#1 ---------GCGCGGTGGCGCGTTCGTCACTGTGAGGACTCGTGCACGTGTATAGGTCAC 51 *************************************************** consensus_5130#0 GCCGTGCTCGTAGAAGTCAGCTTCTCTGTAGTAGAACCAGGCTTCTGTGTTGTCATTCGG 360 consensus_5130#1 GCCGTGCTCGTAGAAGTCAGCTTCTCTGTAGTAGAACCAGGCTTCTGTGTTGTCATTCAG 111 ********************************************************** * consensus_5130#0 GAATGGCATTAGCTCAAATGTAGATGGTTTCACAGTCTTGATCTTAAATAATTTGGGAGT 420 consensus_5130#1 GAATGGCATTAGCTCAAATGTAGATGGTTTCACAGTCTTGATCTTAAATAATTTGGGAGT 171 ************************************************************ consensus_5130#0 CTGTTCGGTCCTGATGAAATAAAAGCCTAACAATGAACGAGAAAGAAATATC-AAAAATA 479 consensus_5130#1 CTGTTCGGTCTTGATGAAATAAAAGCATAACAATGAACGAGAAAGAAATATCCAAAAATA 231 ********** *************** ************************* ******* consensus_5130#0 TTTTTGAAAATGTCGCCCTATGTGAAAATTTAAGCCAAAAAGGTATATATAAA------- 532 consensus_5130#1 TTTTTGAAAATGTCGC---AAGTTTACTGTTTAGTGTACTAGGTGACGGCGGATTCACCA 288 **************** * ** * ** ** * **** * consensus_5130#0 ------------------------------------------------------------ consensus_5130#1 CTGGAGTCTCCGAGCACATGCATTTGGATCCTGCGGTATAATTCGTACCAGCAGTCATCG 348 consensus_5130#0 ------------- consensus_5130#1 ACCTACTATTGCT 361 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||