These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_515#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 297 fasta sequence [ATTAGAAGGCTAATAATATGACAACTTGAACATCAACATATACATTTTGTAGATTTAAACACCAGAATTCAGAAACGTTTTCGGCACTTTCAATCTCAGAAAATAGTGATTTATATCGAGCATCATTTAAGTTTTTTTTACACTATTCGTTTTCTGTTTCTTCTTTATGTTGCATCAGAAATGTTGCCAAAGCTTCGATCGGATTAGGCGGTCTTTCTTTGGCTATCATATTCAGACCTTTTAGAAGAACTGGAACCACAGTTTTATCTAAATAAGCCCTAGTATCTGTGCTTTTTG] [+] EMBL CD074851 [ATTAGAAGGCTAATAATATGACAACTTGAACATCAACATATACATTTTGTAGATTTAAACACCAGAATTCAGAAACGTTTTCGGCACTTTCAATCTCAGAAAATAGTGATTTATATCGAGCATCATTTAAGTTTTTTTTACACTATTCGTTTTCTGTTTCTTCTTTATGTTGCATCAGAAATGTTGCCAAAGCTTCGATCGGATTAGGCGGTCTTTCTTTGGCTATCATATTCAGACCTTTTAGAAGAACTGGAACCACAGTTTTATCTAAATAAGCCCTAGTATCTGTGCTTTTTG] consensusID : consensus_515#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 205 fasta sequence [TTAGAAGGCTAATAATATGACAACTTGAACATCAACATATACATTTTGTAGATTTAAACACCAGAATTCTCAGAAAATAGTGATTTATATCGAGCATCATTTAAGTTTTTTTTACACTATTCGTTTTCTGTTTCTTCTTTATGTTGCATCAGAAATGTTGCCAAAGCTTCGATCGGATTAGGCGGTCTTTCTTTGGACTGGAACC] [-] EMBL CD081024 [TTAGAAGGCTAATAATATGACAACTTGAACATCAACATATACATTTTGTAGATTTAAACACCAGAATTCTCAGAAAATAGTGATTTATATCGAGCATCATTTAAGTTTTTTTTACACTATTCGTTTTCTGTTTCTTCTTTATGTTGCATCAGAAATGTTGCCAAAGCTTCGATCGGATTAGGCGGTCTTTCTTTGGACTGGAACC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_515#0 ATTAGAAGGCTAATAATATGACAACTTGAACATCAACATATACATTTTGTAGATTTAAAC 60 consensus_515#1 -TTAGAAGGCTAATAATATGACAACTTGAACATCAACATATACATTTTGTAGATTTAAAC 59 *********************************************************** consensus_515#0 ACCAGAATTCAGAAACGTTTTCGGCACTTTCAATCTCAGAAAATAGTGATTTATATCGAG 120 consensus_515#1 ACCAGAATTC-------------------------TCAGAAAATAGTGATTTATATCGAG 94 ********** ************************* consensus_515#0 CATCATTTAAGTTTTTTTTACACTATTCGTTTTCTGTTTCTTCTTTATGTTGCATCAGAA 180 consensus_515#1 CATCATTTAAGTTTTTTTTACACTATTCGTTTTCTGTTTCTTCTTTATGTTGCATCAGAA 154 ************************************************************ consensus_515#0 ATGTTGCCAAAGCTTCGATCGGATTAGGCGGTCTTTCTTTGGCTATCATATTCAGACCTT 240 consensus_515#1 ATGTTGCCAAAGCTTCGATCGGATTAGGCGGTCTTTCTTTGG--ACTGGAACC------- 205 ****************************************** * * * consensus_515#0 TTAGAAGAACTGGAACCACAGTTTTATCTAAATAAGCCCTAGTATCTGTGCTTTTTG 297 consensus_515#1 --------------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||