These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5154#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 722 fasta sequence [ATTTGAATTCATCCAAGAAGTGTTAACAGTCTCAAAGGCCTTTAAAAATCGTATTCAACGTTTAACTCAACATAAATATGCATCAGAGGTTATAGATACGTTATATAATGATTATGCCACTGCATCACAACGTAGTGAAATGATGCAAGAGTTTTATGGGAATAGACATGCTCTTAGACTTGGTGAACATAAATTGTTTACACT-TGAAGATACATTAAAATTGCATCCAGACAAAAGTACTGTGATACTTAATAATCTTACAAGGATACTCATCAATTTAGTATCAAAGGGCCTTAACAAATACAGTATTGTTCAACACTTATTATTGGAGTATTTACGGAATGCAGCATCATTTTCCAAAGCATCATCAACACCTGTTAATGAGAAAGCTAGTATGAATACATCTCAACCAAGCGAAACAATTGTGCCATACATAATTAATGAACCAGTTGACTGTAAAGATGAGGATATTATTCCTAAATCATTTCATGATAATTTTACAACTTTGATTGAAAATTTAATCAATGGTCAAATAGTTCCAATGTTACATACTCGTGATGGTGTTCGTGCTGCTTTAAGAATACTTTGGATGTGTAGTCCTCAAAAACGTAAGATTTTAGTTAAAGGCTTAAAAACCTGTGTACAAAATATTGCGTTTAATGAACATGGACATCTTTTTATTATTGGATTAATCGATTCAGTGGATGATATTATATTATTAC] [+] EMBL CD195811 [ATTTGAATTCATCCAAGAAGTGTTAACAGTCTCAAAGGCCTTTAAAAATCGTATTCAACGTTTAACTCAACATAAATATGCATCAGAGGTTATAGATACGTTATATAATGATTATGCCACTGCATCACAACGTAGTGAAATGATGCAAGAGTTTTATGGGAATAGACATGCTCTTAGACTTGGTGAACATAAATTGTTTACACT TGAAGATACATTAAAATTGCATCCAGACAAAAGTACTGTGATACTTAATAATCTTACAAGGATACTCATCAATTTAGTATCAAAGGGCCTTAACAAATACAGTATTGTTCAACACTTATTATTGGAGTATTTACGGAATGCAGCATCATTTTCCAAAGCATCATCAACACCTGTTAATGAGAAAG ] [+] EMBL CD115399 [ ATTATGCCACTGCATCACAACGTAGTGAAATGACGCAAGAGTTTTATGGGAATAGACATGCTCTTAGACTTGGTGAACATAAATTGTTTACACTNTGAAGATACATTAAAATTGCATCCAGACAAAAGTACTGTGATACTTAATAATCTTACAAGGATACTCATCAATTTAGTATCAAAGGGCCTTAACAAATACAGTATTGTTCAACACTTATTATTGGAGTATTTACGGAATGCAGCATCATTTTCCAAAGCATCATCAACACCTGTTAATGAGAAAGCTAGTATGAATACATCTCAACCAAGCGAAACAATTGTGCCATACATAATTAATGAACCAGTTGACTGTAAAGATGAGGATATTATTCCTAAATCATTTCATGATAATTTTACAACTTTGATTGAAAATTTAATCAATGGTCAAATAGTTCCAATGTTACATACTCGTGATGGTGTTCGTGCTGCTTTAAGAATACTTTGGATGTGTAGTCCTCAAAAACGTAAGATTTTAGTTAAAGGCTTAAAAACCTGTGTACAAAATATTGCGTTTAATGAACATGGACATCTTTTTATTATTGGATTAATCGATTCAGTGGATGATATTATATTATTAC] consensusID : consensus_5154#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 345 fasta sequence [ATTTGAGTTCATCCAAGAAGTGTTAACAGTCTCAAAGAAAGTCATACCTGATTTGTGCATGGCTCATGATACTTCAAGAATCTTGGAAGATTGTGTTAAATATGGTACAGAGTCACAACGTTGGCAAATTTTCAGTGAAGTTCACCCGAATCTGGTGATACTGGCTAAATCACGCTATGCAAAATTTGTTATATTAAAACTAATAAAGTACGGTGACAAACAACACATATTGGAGATGTTTAAGGCCTTTAAAAATCGTATTCAACGTTTAAACTCACATAAATATGCATCAGAAGTTATAGATACGTTATATAATGATTATGCCACTGCATCACAACGTAGTGA] [+] EMBL CD195892 [ATTTGAGTTCATCCAAGAAGTGTTAACAGTCTCAAAGAAAGTCATACCTGATTTGTGCATGGCTCATGATACTTCAAGAATCTTGGAAGATTGTGTTAAATATGGTACAGAGTCACAACGTTGGCAAATTTTCAGTGAAGTTCACCCGAATCTGGTGATACTGGCTAAATCACGCTATGCAAAATTTGTTATATTAAAACTAATAAAGTACGGTGACAAACAACACATATTGGAGATGTTTAAGGCCTTTAAAAATCGTATTCAACGTTTAAACTCACATAAATATGCATCAGAAGTTATAGATACGTTATATAATGATTATGCCACTGCATCACAACGTAGTGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5154#0 ATTTGAATTCATCCAAGAAGTGTTAACAGTCTCAAAGGCCTTTAAAAATCGTATTCAACG 60 consensus_5154#1 ATTTGAGTTCATCCAAGAAGTGTTAACAGTCTCAAAG-------AAAGTCATACCTGAT- 52 ****** ****************************** *** ** ** * consensus_5154#0 TTTAACTCAACATAAATATGCATCAGAGGTTATAGATACGTTATATAATGATTATGCCAC 120 consensus_5154#1 TTGTGCATGGC-TCATGATACTTCAAGAATCTTGGA-AGATTGTGT--TAAATATGGTAC 108 ** * * * * ** * *** * * ** * ** * * * * **** ** consensus_5154#0 TGCATCACAACGTAGTGAAATGATGCAAGAGTTTTATGGGAAT--AGACATGCT--CTTA 176 consensus_5154#1 AGAGTCACAACGTTGGCAAATTTTCAGTGAAGTTCACCCGAATCTGGTGATACTGGCTAA 168 * ********* * **** * ** ** * **** * ** ** ** * consensus_5154#0 GACTTGGTGAACATAAATTGTTTACACTTGAAGATACATTAAAATTGCATCCAGACAAAA 236 consensus_5154#1 ATCACGCTATGCAAAATTTGTT---ATATTAAAACTAATAAAGTACGGTGACAAACAACA 225 * * * ** ** ***** * * ** * ** ** * ** **** * consensus_5154#0 -GTACTGT-GATACTTAATAATCTTACAAGG-ATACTCA----TCAATTTAGTATCAAAG 289 consensus_5154#1 CATATTGGAGATGTTTAAGGCCTTTAAAAATCGTATTCAACGTTTAAACTCACATAAATA 285 ** ** *** **** *** ** ** *** * ** * ** ** consensus_5154#0 GGCCTTAACAAATACAGTATTGTTCAACACTTATTATTGGAGTATTTACGGAATGCAGCA 349 consensus_5154#1 TGCATCAGAAGTTATAGATACGTTATATAATGATTATGCCACTGCAT-CACAACGTAGTG 344 ** * * * ** ** *** * * * ***** * * * * ** * ** consensus_5154#0 TCATTTTCCAAAGCATCATCAACACCTGTTAATGAGAAAGCTAGTATGAATACATCTCAA 409 consensus_5154#1 A----------------------------------------------------------- 345 consensus_5154#0 CCAAGCGAAACAATTGTGCCATACATAATTAATGAACCAGTTGACTGTAAAGATGAGGAT 469 consensus_5154#1 ------------------------------------------------------------ consensus_5154#0 ATTATTCCTAAATCATTTCATGATAATTTTACAACTTTGATTGAAAATTTAATCAATGGT 529 consensus_5154#1 ------------------------------------------------------------ consensus_5154#0 CAAATAGTTCCAATGTTACATACTCGTGATGGTGTTCGTGCTGCTTTAAGAATACTTTGG 589 consensus_5154#1 ------------------------------------------------------------ consensus_5154#0 ATGTGTAGTCCTCAAAAACGTAAGATTTTAGTTAAAGGCTTAAAAACCTGTGTACAAAAT 649 consensus_5154#1 ------------------------------------------------------------ consensus_5154#0 ATTGCGTTTAATGAACATGGACATCTTTTTATTATTGGATTAATCGATTCAGTGGATGAT 709 consensus_5154#1 ------------------------------------------------------------ consensus_5154#0 ATTATATTATTAC 722 consensus_5154#1 ------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||