These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5161#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 614 fasta sequence [GATCCTACTGTTGTATCCTGTTTACAACAAGTTTTAAAGGACTTTCTGTCCTCAAAATCAGGATGTGAAATAGATTTACAAATATCTAATTCTCCTTTGAATCATAGCAAATCTTTAACTCCTGCATCGAATACATCACATTCTACTGGTGTTGGTTTGTCATCATTATTACGTGGTTCTATTGGTCGTGTACAATCAACTCCTGTTCACACCACAATAGAAACTGCGAAAATTTCCACTTCACTCGAAAATTCTTCCTCTATCTTAAATATAACTTGTCCATCACCAACTGAATCAATGCTTAAGCAAGGTCTTCCACTTAAAGAACAAGATTTTACTCCAATTAAACGATTTGTATCAACAACCACTACTGACTGTGAACAATCTTTAAACAACAATACACCAAAAACTGTTACTTGTCCTTACACTCGAACCCTTCCTAATCGAAGTGCTTCGCGTACAGGTCTTTCACGAAAAACTCGTGTTCGTTCTAGTATCCCTGGATTAAAAAATTCGTCTATAACTGTTTCAGATAAATCTATTTCTCACGAAATAAAACAATCTGAGGTCGTTGATATTGCGAAGTCACCAACTCCTGATATTATTCACTCGCT] [+] EMBL CD116628 [GATCCTACTGTTGTATCCTGTTTACAACAAGTTTTAAAGGACTTTCTGTCCTCAAAATCAGGATGTGAAATAGATTTACAAATATCTAATTCTCCTTTGAATCATAGCAAATCTTTAACTCCTGCATCGAATACATCACATTCTACTGGTGTTGGTTTGTCATCATTATTACGTGGTTCTATTGGTCGTGTACAATCAACTCCTGTTCACACCACAATAGAAACTGCGAAAATTTCCACTTCACTCGAAAATTCTTCCTCTATCTTAAATATAACTTGTCCATCACCAACTGAATCAATGCTTAAGCAAGGTCTTCCACTTAAAGAACAAGATTTTACTCCAATTAAACGATTTGTATCAACAACCACTACTGACTGTGAACAATCTTTAAACAACAATACACCAAAAACTGTTACTTGTCCTTACACTCGAACCCTTCCTAATCGAAGTGCTTCGCGTACAGGTCTTTCACGAAAAACTCGTGTTCGTTCTAGTATCCCTGGATTAAAAAATTCGTCTATAACTGTTTCAGATAAATCTATTTCTCACGAAATAAAACAATCTGAGGTCGTTGATATTGCGAAGTCACCAACTCCTGATATTATTCACTCGCT] consensusID : consensus_5161#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 559 fasta sequence [CGTAATAGTCATCAATATAAAAGCGCACCTAATAATTAGTTTTCGTATATACGACAGACTCATCAGATAAGGAAGTGTTTATTACTCGTAGTTTTGGTTTTCATTTGATTAAATTTTGTTACATTTTGTCGTTGATCAATTAGCTTAGATTATTTATTGTCACTGTTATTCACTAATAATCGTTGGAGTATTTTTCTCTTGAATTTTTAGTGTCCTTACACTCGAACCCTTCCTAATCGAAGTGCTTCGCGTACAGGTCTTTCACGAAAAACTCGTGTTCGTTCTAGTATCCCTGGATTAAAAAATTCGTCTATAACTGTTTCAGATAAATCTATTTCTCACGAAATAAAACAATCTGAGGTCGTTGATATTGCGAAGTCACCAACTCCTGATATTATTCACTCGCTACTTATTACTGAGGAACCATGTTTTACTCCTGAGCCTAAAGCTAAACGTCCTCGCAGTTCCCAACGTAGTAATCAATGTGATAATTCATTAGAACTTTGCAATAACACAGAGATTTTAGAATGTATTCAATCACCTAAAGATATTTTGAATA] [+] EMBL CD115321 [CGTAATAGTCATCAATATAAAAGCGCACCTAATAATTAGTTTTCGTATATACGACAGACTCATCAGATAAGGAAGTGTTTATTACTCGTAGTTTTGGTTTTCATTTGATTAAATTTTGTTACATTTTGTCGTTGATCAATTAGCTTAGATTATTTATTGTCACTGTTATTCACTAATAATCGTTGGAGTATTTTTCTCTTGAATTTTTAGTGTCCTTACACTCGAACCCTTCCTAATCGAAGTGCTTCGCGTACAGGTCTTTCACGAAAAACTCGTGTTCGTTCTAGTATCCCTGGATTAAAAAATTCGTCTATAACTGTTTCAGATAAATCTATTTCTCACGAAATAAAACAATCTGAGGTCGTTGATATTGCGAAGTCACCAACTCCTGATATTATTCACTCGCTACTTATTACTGAGGAACCATGTTTTACTCCTGAGCCTAAAGCTAAACGTCCTCGCAGTTCCCAACGTAGTAATCAATGTGATAATTCATTAGAACTTTGCAATAACACAGAGATTTTAGAATGTATTCAATCACCTAAAGATATTTTGAATA] [+] EMBL CD115585 [CGTAATAGTCATCAATATAAAAGCGCACCTAATAATTAGTTTTCGTATATACGACAGATTCATCAGATAAGGAAGTGTTTATTACTCGTAGTTTTGGTTTTCATTTGATTAAATTTTGTTACATTTTGTCGTTGATCAATTAGCTTAGATTATTTATTGTCACTGTTATTCACTAATAATCGTTGGAGTATTTTTCTCTTGAATTTTTAGTGTCCTTACACTCGAACCCTTCCTAATCGAAGTGCTTCGCGTACAGGTCTTTCACGAAAAACTCGTGTTCGTTCTAGTATCCCTGGATTAAAAAATTCGTCTATAACTGTTTCAGATAAATCTATTTCTCACGAAATAAAACAATCTGAGGTCGTTGATATTGCGAAGTCACCAACTCCTGATATTATTCACTCGCTACTTATTACTGAGGAACCATGTTTTACTCCTGAGCCTAAAGCTAAACGTCCTCGCAGTTCCCAACGTAGTAATCAATGTGATAATTCATTAGAACTTTGCAATAACAAAGAGATTTTAGAATGTATnttca ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5161#0 GATCCTACTGTTGTATCCTGTTTACAACAAGTTTTAAAGGACTTTCTGTCCTCAAAATCA 60 consensus_5161#1 ------------------------------------------------------------ consensus_5161#0 GGATGTGAAATAGATTTACAAATATCTAATTCTCCTTTGAATCATAGCAAATCTTTAACT 120 consensus_5161#1 ------------------------------------------------------------ consensus_5161#0 CCTGCATCGAATACATCACATTCTACTGGTGTTGGTTTGTCATCATTATTACGTGGTTCT 180 consensus_5161#1 ------------------------------------------------------------ consensus_5161#0 ATTGGTCGTGTACAATCAACTCCTGTTCACACCACAATAGAAACTGCGAAAATTTCCACT 240 consensus_5161#1 --------------------------------CGTAATAGTCATCAATATAAA----AGC 24 * ***** * * ** * consensus_5161#0 TCACTCGAAAATTCTTCCTC-TATCTTAAATATAACTTGTCCATCACCAACTGAATCAAT 299 consensus_5161#1 GCACCTAATAATTAGTTTTCGTATATACGACA-GACTCATCAGATAAGGAAGTGTTTATT 83 *** * **** * ** *** * * * *** ** * * * * * consensus_5161#0 GCTTA-AGCAAGGTCTTCCACTTAAAGAA------CAAGATTTTACT-CCAATTAAACGA 351 consensus_5161#1 ACTCGTAGTTTTGGTTTTCATTTGATTAAATTTTGTTACATTTTGTCGTTGATCAATTAG 143 ** ** * ** ** ** * ** * ***** ** ** consensus_5161#0 TTTGTATCA---ACAACCACTACTGACTGTGAACAATCTTTAAACAACAATACACCAAAA 408 consensus_5161#1 CTTAGATTATTTATTGTCACTGTTATTCACTAATAATCGTTGGAGTATTTTTCTCTTGAA 203 ** ** * * **** * ** **** ** * * * * * ** consensus_5161#0 ACTGTTACTTGTCCTTACACTCGAACCCTTCCTAATCGAAGTGCTTCGCGTACAGGTCTT 468 consensus_5161#1 --TTTTTAGTGTCCTTACACTCGAACCCTTCCTAATCGAAGTGCTTCGCGTACAGGTCTT 261 * ** *************************************************** consensus_5161#0 TCACGAAAAACTCGTGTTCGTTCTAGTATCCCTGGATTAAAAAATTCGTCTATAACTGTT 528 consensus_5161#1 TCACGAAAAACTCGTGTTCGTTCTAGTATCCCTGGATTAAAAAATTCGTCTATAACTGTT 321 ************************************************************ consensus_5161#0 TCAGATAAATCTATTTCTCACGAAATAAAACAATCTGAGGTCGTTGATATTGCGAAGTCA 588 consensus_5161#1 TCAGATAAATCTATTTCTCACGAAATAAAACAATCTGAGGTCGTTGATATTGCGAAGTCA 381 ************************************************************ consensus_5161#0 CCAACTCCTGATATTATTCACTCGCT---------------------------------- 614 consensus_5161#1 CCAACTCCTGATATTATTCACTCGCTACTTATTACTGAGGAACCATGTTTTACTCCTGAG 441 ************************** consensus_5161#0 ------------------------------------------------------------ consensus_5161#1 CCTAAAGCTAAACGTCCTCGCAGTTCCCAACGTAGTAATCAATGTGATAATTCATTAGAA 501 consensus_5161#0 ---------------------------------------------------------- consensus_5161#1 CTTTGCAATAACACAGAGATTTTAGAATGTATTCAATCACCTAAAGATATTTTGAATA 559 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||