These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5164#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 710 fasta sequence [TCGTGATATTATTAACCTACTATGCAATTTAATCCTAACAAATGCCACTCGAAGTATTTCTACCAGTTTTTCCATATCAGATAGCTTGTCTAATATTGGCATTAGTGCGGATTGTCTCCCTAATGATTTTCACGCTTTCTCAACAGATGATCAAGCTTTAATTATCCTTGACCATTTTTTGGAGAACTTACGAAGTGAATTCCCATCGTATGTGTATCGTGTATCGGAATGGAATTCTCTTAATTTCCTACGTCATGCATTGAGATGGCTCTGTATTTATAGTCGACATGATAACAATAAAAGTACGTGTTGGCCATTGTCTCGTCTCCGAAAGTATTTGGTTTTTGGTGAGGAAATTATTTCACAGCTGACAGCAATTACCTCGAGTCAAAAATCTCACTCGAAAATAGTCCATTCATCTTCGTCACCTGTTTTATTATCTATCCGAAACAACCAAACAATTTCTCAGTCTTCAGGATCTACTGTTAACGTTGGCAATATGGACACTGCTTTAACTCAGATCATGAGACTTGTACTCGCTCGAATGCATACGTCTTTAGGAAATCTGACCCAGTTGGGTGTACANAGNTGAAACTCTAGTTGGTGTTTTAACTGAGATTCTCGGCAGTTCAAGGTCATCCATCTATCAAGAAAATCGGGATGCACTGCACCGACTAAAGTGTCTGGGAAATGATCACCAACCGCTGGTA] [+] EMBL CD144719 [TCGTGATATTATTAACCTACTATGCAATTTAATCCTAACAAATGCCACTCGAAGTATTTCTACCAGTTTTTCCATATCAGATAGCTTGTCTAATATTGGCATTAGTGCGGATTGTCTCCCTAATGATTTTCACGCTTTCTCAACAGATGATCAAGCTTTAATTATCCTTGACCATTTTTTGGAGAACTTACGAAGTGAATTCCCATCGTATGTGTATCGTGTATCGGAATGGAATTCTCTTAATTTCCTACGTCATGCATTGAGATGGCTCTGTATTTATAGTCGACATGATAACAATAAAAGTACGTGTTGGCCATTGTCTCGTCTCCGAAAGTATTTGGTTTTTGGTGAGGAAATTATTTCACAGCTGACAGCAATTACCTCGAGTCAAAAATCTCACTCGAAAATAGTCCATTCATCTTCGTCACCTGTTTTATTATCTATCCGAAACAACCAAACAATTTCTCAGTCTTCAGGATCTACTGTTAACGTTGGCAATATGGACACTGCTTTAACTCAGATCATGAGACTTGTACTCGCTCGAATGCATACGTCTTTAGGAAATCTGACCCAGTTGGGTGTACANAGNTGAAACTCTAGTTGGTGTTTTAACTGAGATTCTCGGCAGTTCAAGGTCATCCATCTATCAAGAAAATCGGGATGCACTGCACCGACTAAAGTGTCTGGGAAATGATCACCAACCGCTGGTA] consensusID : consensus_5164#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 574 fasta sequence [TCATTTAAAAATCCCGGCACGTTGATCAAGCTTTAATTATCCTTGACCATTTTTTGGAGAACTTACGAAGTGAATTCCCATCGTATGTGTATCGTGTATCGGAATGGAATTCTCTTAATTTCCTACGTCATGCATTGATATGGCTCTGTATTTATAGTCGACATGATAACAATAAAAGTACGTGTTGGCCATTGTCTCGTCTCCGAAAGTATTTGGTTTTTGGTGAGGAAATTATTTCACAGCTGACAGCAATTACCTCGAGTCAAAAATCTCACTCGAAAATAGTCCATTCATCTTCGTCACCTGTTTTATTATCTATCCGAAACAACCAAACAATTTCTCAGTCTTCAGGATCTACTGTTAACGTTGGCAATATGGACACTGCTTTAACTCAGATCATGAGACTTGTACTCGCTCGAATGCATACGTCTTTAGGAAATCTGACCCAGTTGGGTGTACAAGTTGAAACTCTAGTTGGTGTTTTAACTGAGATTCTCAGCAGTTCAGGGTCATCCATCTATCAAGATATCGGGGATGCACTGCACCGACTAAAGTGTCTGGGAATTGATCACCC] [+] EMBL CD115297 [TCATTTAAAAATCCCGGCACGTTGATCAAGCTTTAATTATCCTTGACCATTTTTTGGAGAACTTACGAAGTGAATTCCCATCGTATGTGTATCGTGTATCGGAATGGAATTCTCTTAATTTCCTACGTCATGCATTGATATGGCTCTGTATTTATAGTCGACATGATAACAATAAAAGTACGTGTTGGCCATTGTCTCGTCTCCGAAAGTATTTGGTTTTTGGTGAGGAAATTATTTCACAGCTGACAGCAATTACCTCGAGTCAAAAATCTCACTCGAAAATAGTCCATTCATCTTCGTCACCTGTTTTATTATCTATCCGAAACAACCAAACAATTTCTCAGTCTTCAGGATCTACTGTTAACGTTGGCAATATGGACACTGCTTTAACTCAGATCATGAGACTTGTACTCGCTCGAATGCATACGTCTTTAGGAAATCTGACCCAGTTGGGTGTACAAGTTGAAACTCTAGTTGGTGTTTTAACTGAGATTCTCAGCAGTTCAGGGTCATCCATCTATCAAGATATCGGGGATGCACTGCACCGACTAAAGTGTCTGGGAATTGATCACCC] [+] EMBL CD115299 [ TTAATTGTCCTTGACCATTTTTTGGAGAACTTACGAAGTGAATTCCCATCGTATGTGTATCGTGTATCGGAATGGAATTCTCTTAATTTCCTACGTCATGCATTGAGATGGCTCTGTATTTATAGTCGACATGATAACAATAAAAGTACGTGTTGGCCATTGTCTCGTCTCCGAAAGTATTTGGTTTTTGGTGAGGAAATTATTTCACAGCTGACAGCAATTACCTCGAGTCAAAAATCTCACTCGAAAATAGTCCATTCATCTTCGTCACCTGTTTTATTATCTATCCGAAACAACCAAACAATTTCTCAGTCTTCAGGATCTACTGTTAACGTTGGCAATATGGACACTGCTTTAACTCAGATCATGAGACTTGTACTCGCTCGAATGCATACGTCTTTAGGAAATCTGACCCAGTTGGGTGTACAAGTTGAAACTCTAGTTGGTGTTTTAACTGAGATTCTCAGCAGTTCAGGGTCATCCATCTATCAAGAAAT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5164#0 TCGTGATATTATTAACCTACTATGCAATTTAATCCTAACAAATGCCACTCGAAGTATTTC 60 consensus_5164#1 ------------------------------------------------------------ consensus_5164#0 TACCAGTTTTTCCATATCAGATAGCTTGTCTAATATTGGCATTAGTGCGGATTGTCTCCC 120 consensus_5164#1 ------------------------------------------------------------ consensus_5164#0 TAATGATTTTCACGCTTTCTCAACA-GATGATCAAGCTTTAATTATCCTTGACCATTTTT 179 consensus_5164#1 ---TCATTTAAAAA---TCCCGGCACGTTGATCAAGCTTTAATTATCCTTGACCATTTTT 54 * **** * ** * ** * ******************************** consensus_5164#0 TGGAGAACTTACGAAGTGAATTCCCATCGTATGTGTATCGTGTATCGGAATGGAATTCTC 239 consensus_5164#1 TGGAGAACTTACGAAGTGAATTCCCATCGTATGTGTATCGTGTATCGGAATGGAATTCTC 114 ************************************************************ consensus_5164#0 TTAATTTCCTACGTCATGCATTGAGATGGCTCTGTATTTATAGTCGACATGATAACAATA 299 consensus_5164#1 TTAATTTCCTACGTCATGCATTGATATGGCTCTGTATTTATAGTCGACATGATAACAATA 174 ************************ *********************************** consensus_5164#0 AAAGTACGTGTTGGCCATTGTCTCGTCTCCGAAAGTATTTGGTTTTTGGTGAGGAAATTA 359 consensus_5164#1 AAAGTACGTGTTGGCCATTGTCTCGTCTCCGAAAGTATTTGGTTTTTGGTGAGGAAATTA 234 ************************************************************ consensus_5164#0 TTTCACAGCTGACAGCAATTACCTCGAGTCAAAAATCTCACTCGAAAATAGTCCATTCAT 419 consensus_5164#1 TTTCACAGCTGACAGCAATTACCTCGAGTCAAAAATCTCACTCGAAAATAGTCCATTCAT 294 ************************************************************ consensus_5164#0 CTTCGTCACCTGTTTTATTATCTATCCGAAACAACCAAACAATTTCTCAGTCTTCAGGAT 479 consensus_5164#1 CTTCGTCACCTGTTTTATTATCTATCCGAAACAACCAAACAATTTCTCAGTCTTCAGGAT 354 ************************************************************ consensus_5164#0 CTACTGTTAACGTTGGCAATATGGACACTGCTTTAACTCAGATCATGAGACTTGTACTCG 539 consensus_5164#1 CTACTGTTAACGTTGGCAATATGGACACTGCTTTAACTCAGATCATGAGACTTGTACTCG 414 ************************************************************ consensus_5164#0 CTCGAATGCATACGTCTTTAGGAAATCTGACCCAGTTGGGTGTACANAGNTGAAACTCTA 599 consensus_5164#1 CTCGAATGCATACGTCTTTAGGAAATCTGACCCAGTTGGGTGTACAA-GTTGAAACTCTA 473 ********************************************** * ********** consensus_5164#0 GTTGGTGTTTTAACTGAGATTCTCGGCAGTTCAAGGTCATCCATCTATCAAGAAAATCGG 659 consensus_5164#1 GTTGGTGTTTTAACTGAGATTCTCAGCAGTTCAGGGTCATCCATCTATCAAGATATCGGG 533 ************************ ******** ******************* * ** consensus_5164#0 GATGCACTGCACCGACTAAAGTGTCTGGGAAATGATCACCAACCGCTGGTA 710 consensus_5164#1 GATGCACTGCACCGACTAAAGTGTCTGGGAATTGATCACCC---------- 574 ******************************* ******** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||