cluster # 5165

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Schistosoma mansoni
cluster # 5165 cluster # 5165 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5165#0 length = 345 sequences # 2

consensus_5165#1 length = 309 sequences # 1

consensusID : consensus_5165#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 345
fasta sequence

                              [AAATTGTATTATATTAACAAAATCTAACAATTATAAGTCTGTACAACAGAGAATTACAACTAAGCAAATGACTAGTTTTCAACGAGGCCATGGATCAACCCTATGTGTGCGTATAA-CAAGTGAAATTTTTCTTGACATCTCAAAGTCATACACACGTTTACACCGTTCATACATATATCTTCGTCTCCAATCAGTTGGTTTTTCATAACGTTGTTGAAAATTGACCGTACTCCTTACCTTATCAACATTTATTATCATTGTCCTTATTTGCCTCATTTTTTCACTTTTTTCTAGTAAGTACTGACAATGCATTAAAAGGGGGTATTTTCTGAACTGATCACAGTG]

[+] EMBL CD072958             [AAATTGTATTATATTAACAAAATCTAACAATTATAAGTCTGTACAACAGAGAATTACAACTAAGCAAATGACTAGTTTTCAACGAGGCCATGGATCAACCCTATGTGTGCGTATAA CAAGTGAAATTTTTCTTGACATCTCAAAGTCATACACACGTTTACACCGTTCATACATATATCTTCGTCTCCAATCAGTTGGTTTTTCATAACGTTGTTGAAAATTGACCGTACTCCTTACCTTATCAACATTTATTATCATTGTCCTTATTTGCCTCATTTTTTCACTTTTTTCTAGTAAGTACTGACAATGCATTAAAAGGGGGTATTTTCTGAACTGATCACAGTG]
[-] EMBL AA559492             [ AATTGTATTATATTAACAAAATNTAACAATTATAAGTCTGTACAACAGAGNATTACAACTAAGCAAATGACTAGTTTTCAACGAGGCCATGGANCAACCCTATGTGTGCGTATAANCAAGTGAAATTTTTCTTGACAANTCAGAGTCATACACACGTTTACACCGTTCATACATATAATTATGNCTCCAATCAGTTGGTTTTTCATAACGT                                                                                                                                      ]




>consensus_5165#0
AAATTGTATTATATTAACAAAATCTAACAATTATAAGTCTGTACAACAGAGAATTACAAC
TAAGCAAATGACTAGTTTTCAACGAGGCCATGGATCAACCCTATGTGTGCGTATAACAAG
TGAAATTTTTCTTGACATCTCAAAGTCATACACACGTTTACACCGTTCATACATATATCT
TCGTCTCCAATCAGTTGGTTTTTCATAACGTTGTTGAAAATTGACCGTACTCCTTACCTT
ATCAACATTTATTATCATTGTCCTTATTTGCCTCATTTTTTCACTTTTTTCTAGTAAGTA
CTGACAATGCATTAAAAGGGGGTATTTTCTGAACTGATCACAGTG

consensusID : consensus_5165#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 309
fasta sequence

                              [AAGCAAATGACTAGTTTTCAACGAGGCCATGGATCAACCCTATGTGTGCGTATAACAAGTGAAATTTTTCTTGACATCTCAGAGTCATACACACGTTTACACCGTTCATACATATATCTTCGTCTCCAATCAGTTGGTTTTTCATAACGTTGTTGAAAATTGACCGTACTCCTTACCTTATCAACATTTATTATCTTATTAATCGACCTGAAAGCCCCGTTATAGTCATCATTGTTAACTATTATAGTTTTTTTCAAAAATCGAAAGTTCTTGAAGAAAGTATCCACTGGTAATGATGACTTTGACATA]

[-] EMBL CD145152             [AAGCAAATGACTAGTTTTCAACGAGGCCATGGATCAACCCTATGTGTGCGTATAACAAGTGAAATTTTTCTTGACATCTCAGAGTCATACACACGTTTACACCGTTCATACATATATCTTCGTCTCCAATCAGTTGGTTTTTCATAACGTTGTTGAAAATTGACCGTACTCCTTACCTTATCAACATTTATTATCTTATTAATCGACCTGAAAGCCCCGTTATAGTCATCATTGTTAACTATTATAGTTTTTTTCAAAAATCGAAAGTTCTTGAAGAAAGTATCCACTGGTAATGATGACTTTGACATA]




>consensus_5165#1
AAGCAAATGACTAGTTTTCAACGAGGCCATGGATCAACCCTATGTGTGCGTATAACAAGT
GAAATTTTTCTTGACATCTCAGAGTCATACACACGTTTACACCGTTCATACATATATCTT
CGTCTCCAATCAGTTGGTTTTTCATAACGTTGTTGAAAATTGACCGTACTCCTTACCTTA
TCAACATTTATTATCTTATTAATCGACCTGAAAGCCCCGTTATAGTCATCATTGTTAACT
ATTATAGTTTTTTTCAAAAATCGAAAGTTCTTGAAGAAAGTATCCACTGGTAATGATGAC
TTTGACATA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5165#0      AAATTGTATTATATTAACAAAATCTAACAATTATAAGTCTGTACAACAGAGAATTACAAC 60
consensus_5165#1      ------------------------------------------------------------
                                                                                  

consensus_5165#0      TAAGCAAATGACTAGTTTTCAACGAGGCCATGGATCAACCCTATGTGTGCGTATAACAAG 120
consensus_5165#1      -AAGCAAATGACTAGTTTTCAACGAGGCCATGGATCAACCCTATGTGTGCGTATAACAAG 59
                       ***********************************************************

consensus_5165#0      TGAAATTTTTCTTGACATCTCAAAGTCATACACACGTTTACACCGTTCATACATATATCT 180
consensus_5165#1      TGAAATTTTTCTTGACATCTCAGAGTCATACACACGTTTACACCGTTCATACATATATCT 119
                      ********************** *************************************

consensus_5165#0      TCGTCTCCAATCAGTTGGTTTTTCATAACGTTGTTGAAAATTGACCGTACTCCTTACCTT 240
consensus_5165#1      TCGTCTCCAATCAGTTGGTTTTTCATAACGTTGTTGAAAATTGACCGTACTCCTTACCTT 179
                      ************************************************************

consensus_5165#0      ATCAACATTTATTATC--ATTGTCC---TTATTTGCCTCATT----TTTTCACTTTT--- 288
consensus_5165#1      ATCAACATTTATTATCTTATTAATCGACCTGAAAGCCCCGTTATAGTCATCATTGTTAAC 239
                      ****************  ***   *    *    *** * **    *  *** * **   

consensus_5165#0      --TTCTAGTAAGTACTGACAAT-----GCATTAAAAGGGGGTATTTTCTGA-ACTGATCA 340
consensus_5165#1      TATTATAGTTTTTTTCAAAAATCGAAAGTTCTTGAAGAAAGTATCCACTGGTAATGATGA 299
                        ** ****   *    * ***     *   *  ***   ****   ***  * **** *

consensus_5165#0      CAGTG----- 345
consensus_5165#1      CTTTGACATA 309
                      *  **