cluster # 5180

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Schistosoma mansoni
cluster # 5180 cluster # 5180 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5180#0 length = 637 sequences # 2

consensus_5180#1 length = 469 sequences # 1

consensusID : consensus_5180#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 637
fasta sequence

                              [ATATTTATGGTGGATTTACAGAAGAAGAAGAAGATGCAGATTATCAGTCAGAAAGTTCAGTTGAAGATGTAATTGATTCTGATTTCGCTGATGAAAGTAGTGGGTCTGATGAAGATGACGCAACAGCAATAGCATCGGACGATGATGAGAACAAACGCCAAAAGCGTCAATCTAATCGTGTTGTTACAAAAGGTTACAAAGAACCTAAACGTGCTAAAATTACTCATCCTCAAGAAAACAAGTTATCTGATAAGAAGGCTAATAGTGATAAGAGTTTAACTGATCCTCAGAGTAAATCTGCCGTACAAATTAAAGATAAGCAACAACAGATAACAGTAACAAAGAAGACTTCAGGACAGATTTCAACTTATGAACGACCAGAATTACGGGCAAGCACATTACAAGCTACAGCTGATCAAGAAGCCGAAACCACTCGTAGACGAATAGCCACTGCTGAAAATACAGCTGTTCGTCGTAAARCTTTACTAGCTGAAATCGCTCAGCGCAAAAATCTTCCGGNGNCCGACGTTTAACTCAAGAGGGATTATTAGCTGAGGCGAAAAATCACGGGAGAAATTAATCGTCGTTCTTTAGCTCGATATCAACGCTTAGAAATTGAAAAGAAAAGGCGCGTNTT]

[+] EMBL CD195600             [ATATTTATGGTGGATTTACAGAAGAAGAAGAAGATGCAGATTATCAGTCAGAAAGTTCAGTTGAAGATGTAATTGATTCTGATTTCGCTGATGAAAGTAGTGGGTCTGATGAAGATGACGCAACAGCAATAGCATCGGACGATGATGAGAACAAACGCCAAAAGCGTCAATCTAATCGTGTTGTTACAAAAGGTTACAAAGAACCTAAACGTGCTAAAATTACTCATCCTCAAGAAAACAAGTTATCTGATAAGAAGGCTAATAGTGATAAGAGTTTAACTGATCCTCAGAGTAAATCTGCCGTACAAATTAAAGATAAGCAACAACAGATAACAGTAACAAAGAAGACTTCAGGACAGATTTCAACTTATGAACGACCAGAATTACGGGCAAGCACATT                                                                                                                                                                                                                                             ]
[+] EMBL AW587563             [                                                                                                                                                                                                                                                                                                                                                                AGGACAGATTTCAACTTATGAACGACCAGAATTACGGGCAAGCACATTACAAGCTACAGCTGATCAAGAAGCCGAAACCACTCGTAGACGAATAGCCACTGCTGAAAATACAGCTGTTCGTCGTAAARCTTTACTAGCTGAAATCGCTCAGCGCAAAAATCTTCCGGNGNCCGACGTTTAACTCAAGAGGGATTATTAGCTGAGGCGAAAAATCACGGGAGAAATTAATCGTCGTTCTTTAGCTCGATATCAACGCTTAGAAATTGAAAAGAAAAGGCGCGTNTT]




>consensus_5180#0
ATATTTATGGTGGATTTACAGAAGAAGAAGAAGATGCAGATTATCAGTCAGAAAGTTCAG
TTGAAGATGTAATTGATTCTGATTTCGCTGATGAAAGTAGTGGGTCTGATGAAGATGACG
CAACAGCAATAGCATCGGACGATGATGAGAACAAACGCCAAAAGCGTCAATCTAATCGTG
TTGTTACAAAAGGTTACAAAGAACCTAAACGTGCTAAAATTACTCATCCTCAAGAAAACA
AGTTATCTGATAAGAAGGCTAATAGTGATAAGAGTTTAACTGATCCTCAGAGTAAATCTG
CCGTACAAATTAAAGATAAGCAACAACAGATAACAGTAACAAAGAAGACTTCAGGACAGA
TTTCAACTTATGAACGACCAGAATTACGGGCAAGCACATTACAAGCTACAGCTGATCAAG
AAGCCGAAACCACTCGTAGACGAATAGCCACTGCTGAAAATACAGCTGTTCGTCGTAAAR
CTTTACTAGCTGAAATCGCTCAGCGCAAAAATCTTCCGGNGNCCGACGTTTAACTCAAGA
GGGATTATTAGCTGAGGCGAAAAATCACGGGAGAAATTAATCGTCGTTCTTTAGCTCGAT
ATCAACGCTTAGAAATTGAAAAGAAAAGGCGCGTNTT

consensusID : consensus_5180#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 469
fasta sequence

                              [CCTTCAGTCCGCCCCTCATATGTTCGCAGGCTCGTAGACGAATAGCCACTGCTGAAAATACAGCTGTTCGTCGTAAAGCTTTACTAGCTGAAATCGCTCAGCGCAAAAATCTTGCGGAGGTCCGACGTTTAACTCAAGAGGAATTATTAGCTGAGGCAAAAATCACGGAAGAAATTAATCGTCGTTCTTTAGCTCGATATCAACGCTTAGAAATTGAAAAGAAAAAGGCACGTATTCAAAAAACGGTCAATTCCACTCCAATGATTCGTTATCATTCATTTACTGTTCCAATTATTGAGGAACAACACAATATATACGGAGTGTTAGCTAATAATGATGATGAGTCAACTATTCGAGCTGGTCCCATAATTACAGATCCTTCAGCTAAATGTTCAAGAAATCTAATAACATTTGCTAATGATGTATGTTTTCGTGATTCAATGCCTGAAACAATCACTCCACTACCAGA]

[+] EMBL CD060974             [CCTTCAGTCCGCCCCTCATATGTTCGCAGGCTCGTAGACGAATAGCCACTGCTGAAAATACAGCTGTTCGTCGTAAAGCTTTACTAGCTGAAATCGCTCAGCGCAAAAATCTTGCGGAGGTCCGACGTTTAACTCAAGAGGAATTATTAGCTGAGGCAAAAATCACGGAAGAAATTAATCGTCGTTCTTTAGCTCGATATCAACGCTTAGAAATTGAAAAGAAAAAGGCACGTATTCAAAAAACGGTCAATTCCACTCCAATGATTCGTTATCATTCATTTACTGTTCCAATTATTGAGGAACAACACAATATATACGGAGTGTTAGCTAATAATGATGATGAGTCAACTATTCGAGCTGGTCCCATAATTACAGATCCTTCAGCTAAATGTTCAAGAAATCTAATAACATTTGCTAATGATGTATGTTTTCGTGATTCAATGCCTGAAACAATCACTCCACTACCAGA]




>consensus_5180#1
CCTTCAGTCCGCCCCTCATATGTTCGCAGGCTCGTAGACGAATAGCCACTGCTGAAAATA
CAGCTGTTCGTCGTAAAGCTTTACTAGCTGAAATCGCTCAGCGCAAAAATCTTGCGGAGG
TCCGACGTTTAACTCAAGAGGAATTATTAGCTGAGGCAAAAATCACGGAAGAAATTAATC
GTCGTTCTTTAGCTCGATATCAACGCTTAGAAATTGAAAAGAAAAAGGCACGTATTCAAA
AAACGGTCAATTCCACTCCAATGATTCGTTATCATTCATTTACTGTTCCAATTATTGAGG
AACAACACAATATATACGGAGTGTTAGCTAATAATGATGATGAGTCAACTATTCGAGCTG
GTCCCATAATTACAGATCCTTCAGCTAAATGTTCAAGAAATCTAATAACATTTGCTAATG
ATGTATGTTTTCGTGATTCAATGCCTGAAACAATCACTCCACTACCAGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5180#0      ATATTTATGGTGGATTTACAGAAGAAGAAGAAGATGCAGATTATCAGTCAGAAAGTTCAG 60
consensus_5180#1      -----------------------------------------------------CCTTCAG 7
                                                                             *****

consensus_5180#0      TTGAAGATGTAATTGATTCTGATTTCGCTGATGAAAGTAGTGGGTCTGATGAAGATGACG 120
consensus_5180#1      TCCGCCCCTCATATGTTCGCAGGCTCGTAGACGAA--TAGCCA--CTGCTGAAAAT---A 60
                      *         *  ** *       ***  ** ***  ***     *** **** **    

consensus_5180#0      CAACAGCAATAGCATCGGACGATGATGAGAACAAACGCCAAAAGCGTCAATCTAATCGTG 180
consensus_5180#1      CAGCTGTT-CGTCGTAAAGCTTTACTAGCTGAAATCGCTCAGCGCAAAAATCTTGCGGAG 119
                      ** * *      * *    *  *  *      ** ***  *  **   *****    * *

consensus_5180#0      TTGTTACAAAAGGTTACAAAGAACCTAAACGTGCTAAAATTACTCATCCTCAAGAAAACA 240
consensus_5180#1      GTCCGACGTTTAACTCAAGAGGAATT--ATTAGCTGAGGCAAAA-ATCACGGAAGAAATT 176
                       *   **       *  * ** *  *  *   *** *    *   ***    *  ***  

consensus_5180#0      AGTTATC--TGATAAGAAGGCTAATAGTGATAAGAGTTTAACTGATCCTCAGAGTAAATC 298
consensus_5180#1      AATCGTCGTTCTTTAGCTCGATATCAACGCTTAGAAATTGA---------AAAGAAAA-- 225
                      * *  **  *  * **   * **  *  * * ***  ** *         * ** ***  

consensus_5180#0      TGCCGTACAAATTAAAGATAAGCAACAACAGATAACAGTAACAAAGAAGACTTCAGGACA 358
consensus_5180#1      AGGCACGTATTCAAAAAACGGTCAATTCC--ACTCCAATGATTCGTTATCATTCATTTAC 283
                       * *    *    *** *    ***   *  *   ** * *      *   ****     

consensus_5180#0      GATTTCAACTTATGAACGACCAGAATTACGGGCAAGCACATTACAAGCTACAGCTGATCA 418
consensus_5180#1      TGTTCCAA-TTATTGAGGAACAACACAATATATA--CGGAGTGTTAGCTAATAATGATGA 340
                        ** *** ****  * ** **  *  *     *  *  * *   *****    **** *

consensus_5180#0      AGAAGCCGAAACCACTCGTAGACGAATAGCCACTGCTGAAAATACAGCTGTTCGTCGTAA 478
consensus_5180#1      TGAGTC---AACTATTCGAGCTGGTCCCATAATTACAGATCCTTCAGCTAAATGTTCAAG 397
                       **  *   *** * ***     *       * * * **   * *****    **   * 

consensus_5180#0      ARCTTTACTAGCTGAAATCGCTCAGCGCAAAAATCTTCCGGNGNCCGACGTTTAACTCAA 538
consensus_5180#1      AAATCTAATAAC---ATTTGCT-AATGATGTATGTTTTCGTGATTCAATGCCTGAAACAA 453
                      *  * ** ** *   * * *** *  *    *   ** **     * * *  * *  ***

consensus_5180#0      GAGGGATTATTAGCTGAGGCGAAAAATCACGGGAGAAATTAATCGTCGTTCTTTAGCTCG 598
consensus_5180#1      TCACT-CCACTACCAGA------------------------------------------- 469
                              * ** * **                                           

consensus_5180#0      ATATCAACGCTTAGAAATTGAAAAGAAAAGGCGCGTNTT 637
consensus_5180#1      ---------------------------------------