cluster # 5187

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Schistosoma mansoni
cluster # 5187 cluster # 5187 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5187#0 length = 928 sequences # 2

consensus_5187#1 length = 586 sequences # 1

consensusID : consensus_5187#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 928
fasta sequence

                              [GAGACTTACAATTACAAATATACATTTTCTGTGGAAATTGCACCAGTTTGTAAGACTGACATAGTTTGCTTATCCCGAGCTCAGTCACAAAAGTTGGGTGGTATCAGTCAGTTGTGTGTTGTCAGCAAAGTTACCGATGCCATACATTTAATTGATCCTTTAACTTGTCAAGTTTGCTATGTAGACAGTAAGGCTTATTTCTCATCTCCATTCATGTCAATAACAACACAAAAACACTTTTCACCATTTGTTGTACTTGAAATTGAAGAACAAAGAGATGATTCTAGCCAAATGAATTCTTCCAGAAAATCATACACTACATCAAGTACTTCATATCCCGTTGGTGCAAAGTTGTCTCAAAAACACTCACCAGTCTCTGTATGGGTAATGAAAGATCCATCTAACGAGACAGGTTTAGTTCAGCTTAATAATGAATCGGATAGTGGTGTAATTCATACTAGATCCCATCTTGGCCGTATTTTACATCCTGGAGATAAAGTACTTGGGTTAGATTTGCGAAATTGCAATATAAACAATACAGAATTTGAAAAACTTCCAGAAGGTAAAATTCCTGACATCATACTAGTTNTACGCCCCAGCCAGTCGAAGAATACACCTGNGGATAAAAACAAATGGACCAAGCAACGTAAACGCATTCGAAAAAATTCATTGAAATGTACAGATTCTGAATGTGATACTTCTACCCNAGTAGTGCATGNCAACTTCTCATCATCAGAAGATGAGTATGTGTCATTCAGCGAGGATGACGAGGGATAACAGNTGAATNTTTCGATATGATACTATTNTGATGAACTCATGAGAACATCATTAATNACATAGTTCATGGACGTACACATATGAGCTTTANAGTGGGGATCATAACACTGTGATGATTTGATTTTCGATTATCACGTATTCTATATAATAA]

[+] EMBL CD082214             [GAGACTTACAATTACAAATATACATTTTCTGTGGAAATTGCACCAGTTTGTAAGACTGACATAGTTTGCTTATCCCGAGCTCAGTCACAAAAGTTGGGTGGTATCAGTCAGTTGTGTGTTGTCAGCAAAGTTACCGATGCCATACATTTAATTGATCCTTTAACTTGTCAAGTTTGCTATGTAGACAGTAAGGCTTATTTCTCATCTCCATTCATGTCAATAACAACACAAAAACACTTTTCACCATTTGTTGTACTTGAAATTGAAGAACAAAGAGATGATTCTAGCCAAATGAATTCTTCCAGAAAATCATACACTACATCAAGTACTTCATATCCCGTTGGTGCAAAGTTGTCTCAAAAACACTCACCAGTCTCTGTATGGGTAATGAAAGATCCATCTAACGAGACAGGTTTAGTTCAGCTTAATAATGAATCGGATAGTGGTGTAATTCATACTAGATCCCATCTTGGCCGTATTTTACATCCTGGAGATAAAGTACTTGGGTTAGATTTGCGAAATTGCAATATAAACAATACAGAATTTGAAAAACTTCCAGAAGGTAAAATTCCTGACATCATACTAGTTNTACGCCCCAGCCAGTCGAAGAATACACCTGNGGATAAAAACAAATGGACCAAGCAACGTAAACGCATTCGAAAAAATTCATTGAAATGTACAGATTCTGAATGTGATACTTCTACCCNAGTAGTGCATGNCAACTTCTCATCATCAGAAGATGAGTATGTGTCATTCAGCGAGGATGACGAGGGATAACAGNTGAATNTTTCGATATGATACTATTNTGATGAACTCATGAGAACATCATTAATNACATAGTTCATGGACGTACACATATGAGCTTTANAGTGGGGATCATAACACTGTGATGATTTGATTTTCGATTATCACGTATTCTATATAATAA]
[+] EMBL CD079155             [                                                                TTTGCTTATCCCGAGCTCAGTCACAAAAGTTGGGTGGTATCAGTCAGTTGTGTGTTGTCAGCAAAGTTACCGATGCCATACATTTAATTGATCCTTTAACTTGTCAAGTTTGCTATGTAGACAGTAAGGCTTATTTCTCATCTCCATTCATGTCAATAACAACACAAAAACACTTTTCACCATTTGTTGTACTTGAAATTGAAG ATAAAGAGATGATTCTAGCCAAATGAATTCTTCCAGAAAATCATACACTACATCAAGTACTTCATATCCCGTTGGTGCAAAGTTGTCTCAAAAACACTCACCAGTCTCTGTATGGGTAATGAAAGATCCATCTAACGAGACAGGTTTAGTTCAGCTTAATAATGAATCGGATAGTGGTGTAATTCATACTAGATCCCATCTTGGCCGTATTTTACATCCTGGAGATAAAGTACTTGGGTTAGATTTGCGAAATTGCAATATAAACAATACAGAATTTGAAAAACTTCCAGAAGGTAAAATTCCTGACATCATACTAGTTCTACGCCCCAGCCAGTCGAAGAA                                                                                                                                                                                                                                                                                                                             ]




>consensus_5187#0
GAGACTTACAATTACAAATATACATTTTCTGTGGAAATTGCACCAGTTTGTAAGACTGAC
ATAGTTTGCTTATCCCGAGCTCAGTCACAAAAGTTGGGTGGTATCAGTCAGTTGTGTGTT
GTCAGCAAAGTTACCGATGCCATACATTTAATTGATCCTTTAACTTGTCAAGTTTGCTAT
GTAGACAGTAAGGCTTATTTCTCATCTCCATTCATGTCAATAACAACACAAAAACACTTT
TCACCATTTGTTGTACTTGAAATTGAAGAACAAAGAGATGATTCTAGCCAAATGAATTCT
TCCAGAAAATCATACACTACATCAAGTACTTCATATCCCGTTGGTGCAAAGTTGTCTCAA
AAACACTCACCAGTCTCTGTATGGGTAATGAAAGATCCATCTAACGAGACAGGTTTAGTT
CAGCTTAATAATGAATCGGATAGTGGTGTAATTCATACTAGATCCCATCTTGGCCGTATT
TTACATCCTGGAGATAAAGTACTTGGGTTAGATTTGCGAAATTGCAATATAAACAATACA
GAATTTGAAAAACTTCCAGAAGGTAAAATTCCTGACATCATACTAGTTNTACGCCCCAGC
CAGTCGAAGAATACACCTGNGGATAAAAACAAATGGACCAAGCAACGTAAACGCATTCGA
AAAAATTCATTGAAATGTACAGATTCTGAATGTGATACTTCTACCCNAGTAGTGCATGNC
AACTTCTCATCATCAGAAGATGAGTATGTGTCATTCAGCGAGGATGACGAGGGATAACAG
NTGAATNTTTCGATATGATACTATTNTGATGAACTCATGAGAACATCATTAATNACATAG
TTCATGGACGTACACATATGAGCTTTANAGTGGGGATCATAACACTGTGATGATTTGATT
TTCGATTATCACGTATTCTATATAATAA

consensusID : consensus_5187#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 586
fasta sequence

                              [TGAAAGATCCATCTAACGAGACAGGTTTAGTTCAGCTTAATAATGAATCGGATAGTGGTGTAATTCATACTAGATCCCATCTTGGCCGTATTTTACATCCTGGAGATAAAGTACTTGGGTTAGATTTGCGAAATTGCAATATAAACAATACAGAATTTGAAAAACTTCCAGAAGGTAAAATTCCTGACATCATACTAGTTTTACGCCCCAGCCAGTCGAAGAATACACCTGGGGATAAAAACAATGGACCAAGCAAACGTAAACGCATTCGAAAAAATTCATTGAATGTAACAGATTCTGAATGTGATACTTCTACCCAGGTAGTGCATGCAAACTTCTCATCATCAGAGGATGAGTATGTGTCATTCAGCGAGGATGACGAGGATAAAACAGTTGAATTTTTCGATATGGATACTAATTTTGATGAACTCAATGAAGAAACATCATTAAATTAACCATAGTTTCATGGAACGTAACACAATAATGAAGCTCTCAGAGGTGGTGTATTCATAATCAACTGTTGTATTGATTTTGATTTTTATCGATATTATTTACGGATAATTTCTCATAAATAAATAAATACTCT]

[-] EMBL CD075826             [TGAAAGATCCATCTAACGAGACAGGTTTAGTTCAGCTTAATAATGAATCGGATAGTGGTGTAATTCATACTAGATCCCATCTTGGCCGTATTTTACATCCTGGAGATAAAGTACTTGGGTTAGATTTGCGAAATTGCAATATAAACAATACAGAATTTGAAAAACTTCCAGAAGGTAAAATTCCTGACATCATACTAGTTTTACGCCCCAGCCAGTCGAAGAATACACCTGGGGATAAAAACAATGGACCAAGCAAACGTAAACGCATTCGAAAAAATTCATTGAATGTAACAGATTCTGAATGTGATACTTCTACCCAGGTAGTGCATGCAAACTTCTCATCATCAGAGGATGAGTATGTGTCATTCAGCGAGGATGACGAGGATAAAACAGTTGAATTTTTCGATATGGATACTAATTTTGATGAACTCAATGAAGAAACATCATTAAATTAACCATAGTTTCATGGAACGTAACACAATAATGAAGCTCTCAGAGGTGGTGTATTCATAATCAACTGTTGTATTGATTTTGATTTTTATCGATATTATTTACGGATAATTTCTCATAAATAAATAAATACTCT]




>consensus_5187#1
TGAAAGATCCATCTAACGAGACAGGTTTAGTTCAGCTTAATAATGAATCGGATAGTGGTG
TAATTCATACTAGATCCCATCTTGGCCGTATTTTACATCCTGGAGATAAAGTACTTGGGT
TAGATTTGCGAAATTGCAATATAAACAATACAGAATTTGAAAAACTTCCAGAAGGTAAAA
TTCCTGACATCATACTAGTTTTACGCCCCAGCCAGTCGAAGAATACACCTGGGGATAAAA
ACAATGGACCAAGCAAACGTAAACGCATTCGAAAAAATTCATTGAATGTAACAGATTCTG
AATGTGATACTTCTACCCAGGTAGTGCATGCAAACTTCTCATCATCAGAGGATGAGTATG
TGTCATTCAGCGAGGATGACGAGGATAAAACAGTTGAATTTTTCGATATGGATACTAATT
TTGATGAACTCAATGAAGAAACATCATTAAATTAACCATAGTTTCATGGAACGTAACACA
ATAATGAAGCTCTCAGAGGTGGTGTATTCATAATCAACTGTTGTATTGATTTTGATTTTT
ATCGATATTATTTACGGATAATTTCTCATAAATAAATAAATACTCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5187#0      GAGACTTACAATTACAAATATACATTTTCTGTGGAAATTGCACCAGTTTGTAAGACTGAC 60
consensus_5187#1      ------------------------------------------------------------
                                                                                  

consensus_5187#0      ATAGTTTGCTTATCCCGAGCTCAGTCACAAAAGTTGGGTGGTATCAGTCAGTTGTGTGTT 120
consensus_5187#1      ------------------------------------------------------------
                                                                                  

consensus_5187#0      GTCAGCAAAGTTACCGATGCCATACATTTAATTGATCCTTTAACTTGTCAAGTTTGCTAT 180
consensus_5187#1      ------------------------------------------------------------
                                                                                  

consensus_5187#0      GTAGACAGTAAGGCTTATTTCTCATCTCCATTCATGTCAATAACAACACAAAAACACTTT 240
consensus_5187#1      ------------------------------------------------------------
                                                                                  

consensus_5187#0      TCACCATTTGTTGTACTTGAAATTGAAGAACAAAGAGATGATTCTAGCCAAATGAATTCT 300
consensus_5187#1      ------------------------------------------------------------
                                                                                  

consensus_5187#0      TCCAGAAAATCATACACTACATCAAGTACTTCATATCCCGTTGGTGCAAAGTTGTCTCAA 360
consensus_5187#1      ------------------------------------------------------------
                                                                                  

consensus_5187#0      AAACACTCACCAGTCTCTGTATGGGTAATGAAAGATCCATCTAACGAGACAGGTTTAGTT 420
consensus_5187#1      ----------------------------TGAAAGATCCATCTAACGAGACAGGTTTAGTT 32
                                                  ********************************

consensus_5187#0      CAGCTTAATAATGAATCGGATAGTGGTGTAATTCATACTAGATCCCATCTTGGCCGTATT 480
consensus_5187#1      CAGCTTAATAATGAATCGGATAGTGGTGTAATTCATACTAGATCCCATCTTGGCCGTATT 92
                      ************************************************************

consensus_5187#0      TTACATCCTGGAGATAAAGTACTTGGGTTAGATTTGCGAAATTGCAATATAAACAATACA 540
consensus_5187#1      TTACATCCTGGAGATAAAGTACTTGGGTTAGATTTGCGAAATTGCAATATAAACAATACA 152
                      ************************************************************

consensus_5187#0      GAATTTGAAAAACTTCCAGAAGGTAAAATTCCTGACATCATACTAGTTNTACGCCCCAGC 600
consensus_5187#1      GAATTTGAAAAACTTCCAGAAGGTAAAATTCCTGACATCATACTAGTTTTACGCCCCAGC 212
                      ************************************************ ***********

consensus_5187#0      CAGTCGAAGAATACACCTGNGGATAAAAACAAATGGACCAAGCAA-CGTAAACGCATTCG 659
consensus_5187#1      CAGTCGAAGAATACACCTGGGGATAAAAACAA-TGGACCAAGCAAACGTAAACGCATTCG 271
                      ******************* ************ ************ **************

consensus_5187#0      AAAAAATTCATTGAAATGTACAGATTCTGAATGTGATACTTCTACCCNAGTAGTGCATGN 719
consensus_5187#1      AAAAAATTCATTGAATGTAACAGATTCTGAATGTGATACTTCTACCCAGGTAGTGCATGC 331
                      ***************    ****************************  ********** 

consensus_5187#0      CAACTTCTCATCATCAGAAGATGAGTATGTGTCATTCAGCGAGGATGACGAGGG-ATAAC 778
consensus_5187#1      AAACTTCTCATCATCAGAGGATGAGTATGTGTCATTCAGCGAGGATGACGAGGATAAAAC 391
                       ***************** **********************************  * ***

consensus_5187#0      AGNTGAATNTTTCGATATG-ATACTA-TTNTGATGAACTCA-TGAG--AACATCATTAA- 832
consensus_5187#1      AGTTGAATTTTTCGATATGGATACTAATTTTGATGAACTCAATGAAGAAACATCATTAAA 451
                      ** ***** ********** ****** ** *********** ***   *********** 

consensus_5187#0      TNA--CATAGTT-CATGGA-CGTA-CACAT--ATGAGCTTTANAGTGGGGAT-----CAT 880
consensus_5187#1      TTAACCATAGTTTCATGGAACGTAACACAATAATGAAGCTCTCAGAGGTGGTGTATTCAT 511
                      * *  ******* ****** **** ****   ****   *   ** ** * *     ***

consensus_5187#0      AACACTGTGATGATTTGATTTTCGATTATCACGTATTCTATATAATAA------------ 928
consensus_5187#1      AATCAACTGTTGTATTGATTTT-GATTTTTATCGATATTATTTACGGATAATTTCTCATA 570
                      **     ** **  ******** **** * *   **  *** **   *            

consensus_5187#0      ----------------
consensus_5187#1      AATAAATAAATACTCT 586