cluster # 5188

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Schistosoma mansoni
cluster # 5188 cluster # 5188 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5188#0 length = 258 sequences # 1

consensus_5188#1 length = 227 sequences # 1
consensus_5188#2 length = 162 sequences # 1

consensusID : consensus_5188#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 258
fasta sequence

                              [ATATATCTATATACATTTAAAGTATTCACATTTCATTGTTTCAAAGCTCAATACCTAAGAATGTTAGTATGTTCATAAAAGAAAAAATACATTTTTAAACACGTTTATCTTTTTACTGTTTACGTTCTAATTTATCTTGTTCATCAAATTCTTGAATTAATTTTAAAAATTTTGGATCTTTTTTATCTGGATAAAAACCAAAACGATCTCTTGCCTCTTCCATTAACATTTCCATTTTATTCTTTTTCACCCGTATCA]

[+] EMBL CD139583             [ATATATCTATATACATTTAAAGTATTCACATTTCATTGTTTCAAAGCTCAATACCTAAGAATGTTAGTATGTTCATAAAAGAAAAAATACATTTTTAAACACGTTTATCTTTTTACTGTTTACGTTCTAATTTATCTTGTTCATCAAATTCTTGAATTAATTTTAAAAATTTTGGATCTTTTTTATCTGGATAAAAACCAAAACGATCTCTTGCCTCTTCCATTAACATTTCCATTTTATTCTTTTTCACCCGTATCA]




>consensus_5188#0
ATATATCTATATACATTTAAAGTATTCACATTTCATTGTTTCAAAGCTCAATACCTAAGA
ATGTTAGTATGTTCATAAAAGAAAAAATACATTTTTAAACACGTTTATCTTTTTACTGTT
TACGTTCTAATTTATCTTGTTCATCAAATTCTTGAATTAATTTTAAAAATTTTGGATCTT
TTTTATCTGGATAAAAACCAAAACGATCTCTTGCCTCTTCCATTAACATTTCCATTTTAT
TCTTTTTCACCCGTATCA

consensusID : consensus_5188#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 227
fasta sequence

                              [TGTTGACGTTCTAANTTATCTTGNTCANCAATTCNTGAANTAATTTTAAAAATTGTGGATCTTTTTTATCTGGATAAAAACCCAAACGATCTCTTGCCTCTTCCAANAACATNTCCATTTTATTCTTTTTCNCCGTATTCATAGATGTTTGTTTAGCTTCTTGATCATGGAATTTTTTTATTATTTCAGGCATTTTANNTANATTTTTCTTAATTTGTAACANTAAT]

[-] EMBL SM919                [TGTTGACGTTCTAANTTATCTTGNTCANCAATTCNTGAANTAATTTTAAAAATTGTGGATCTTTTTTATCTGGATAAAAACCCAAACGATCTCTTGCCTCTTCCAANAACATNTCCATTTTATTCTTTTTCNCCGTATTCATAGATGTTTGTTTAGCTTCTTGATCATGGAATTTTTTTATTATTTCAGGCATTTTANNTANATTTTTCTTAATTTGTAACANTAAT]




>consensus_5188#1
TGTTGACGTTCTAANTTATCTTGNTCANCAATTCNTGAANTAATTTTAAAAATTGTGGAT
CTTTTTTATCTGGATAAAAACCCAAACGATCTCTTGCCTCTTCCAANAACATNTCCATTT
TATTCTTTTTCNCCGTATTCATAGATGTTTGTTTAGCTTCTTGATCATGGAATTTTTTTA
TTATTTCAGGCATTTTANNTANATTTTTCTTAATTTGTAACANTAAT

consensusID : consensus_5188#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 162
fasta sequence

                              [GTATATATCTATATACATTTAAAGTATTCACATTTCATTGTTTCAAAGCTCAATACCTAAGAATGTTAGTATCTTCATAAAAGAAAAANTACATTTTCAAACACGTTCATCTCCCTTTCTAGTTTACGNTCTCAATTTAAATANGTTCCATCAAATTCTTGC]

[+] EMBL SMAA40584            [GTATATATCTATATACATTTAAAGTATTCACATTTCATTGTTTCAAAGCTCAATACCTAAGAATGTTAGTATCTTCATAAAAGAAAAANTACATTTTCAAACACGTTCATCTCCCTTTCTAGTTTACGNTCTCAATTTAAATANGTTCCATCAAATTCTTGC]




>consensus_5188#2
GTATATATCTATATACATTTAAAGTATTCACATTTCATTGTTTCAAAGCTCAATACCTAA
GAATGTTAGTATCTTCATAAAAGAAAAANTACATTTTCAAACACGTTCATCTCCCTTTCT
AGTTTACGNTCTCAATTTAAATANGTTCCATCAAATTCTTGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5188#0      --ATATATCTATATACATTTAAAGTATTCACATTTCATTGTTTCAAAGCTCAATACCTAA 58
consensus_5188#2      GTATATATCTATATACATTTAAAGTATTCACATTTCATTGTTTCAAAGCTCAATACCTAA 60
consensus_5188#1      ---TGTTGACGTTCTAANTTATCTTGNTCANCAATTCNTGAANTAATTTTAAAAATTGTG 57
                         * *     *    * ***   *  ***    *   **    **   * ** *     

consensus_5188#0      GAATGTTAGTATGTTCATAAAAG---AAAAAATACATT--TTTAAACACGTTTATCTT-- 111
consensus_5188#2      GAATGTTAGTATCTTCATAAAAG---AAAAANTACATT--TTCAAACACGTTCATCTCCC 115
consensus_5188#1      GATCTTTTTTATCTGGATAAAAACCCAAACGATCTCTTGCCTCTTCCAANAACATNTCCA 117
                      **   **  *** *  ******    ***   *   **   *    **     ** *   

consensus_5188#0      TTTACTGTTTACGTTCT-AATTTATCTTG--TTCATCAAATTCTTGAATTAATTTTAAAA 168
consensus_5188#2      TTTCTAGTTTACGNTCTCAATTTAAATANGTTCCATCAAATTCTTGC------------- 162
consensus_5188#1      TTTTATTCTTTTTCNCCGTATTCATAGATGTTTGTTTAGCTTCTTGATCATGGAATTTTT 177
                      ***     **     *   *** *       *   * *  ******              

consensus_5188#0      ATTTTGGATCTTTTTTATCTGGATAAAAACCAAAACGATCTCTTGCCTCTTCCATTAACA 228
consensus_5188#2      ------------------------------------------------------------
consensus_5188#1      TTATTATTTCAGGCATTTTANNTANATTTTTCTTAATTTGTAACANTAAT---------- 227
                                                                                  

consensus_5188#0      TTTCCATTTTATTCTTTTTCACCCGTATCA 258
consensus_5188#2      ------------------------------
consensus_5188#1      ------------------------------