These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5219#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 557 fasta sequence [TGCATGTCCAAGATGTCACTCTGCTTATTGTGAATTACCAGTCGAATGTAATGTTTGTGGATTAACCATTAGTGGCTGCACCTCATCTTGCTCGTGCCTATCATCATTTATTCCCATTGGATTTATTTGAACCAGTAAATGGTAGTGGTAGTTTTAGTGAAACATCATTAGATAATCAAGAAAAATCAAAAGAAACTATTGATTCAGCAGATAGCGTGGATCATCAACAACGTCTTTGCTTTGGTTGTAATGTAATTATACCGTCCAAAATTCCTGGATATCAATGTCCTAAATGT-AATTCATATTCCGGTCACTCATGTGATGCTGTTCTACATGATTCCATTCATTCACGTCCTGGATGTTTTACGTTGTTGTAATTGAAGC-ACATGATGTTGATGAATT-AGATATTTTTTTATTTGGACAGG-TAATTC-ACC-AAAAT-ATAAAACGGCCAGTCAAATTGCATTTTTACTCTACAATATGATAGAAACCCCCCTATGAGAAATGTTGTTCTCTTTTGTTAACATGTTTTGCTGTTTGACTGTAAAATAAATGTTCCA] [+] EMBL BE431277 [TGCATGTCCAAGATGTCACTCTGCTTATTGTGAATTACCAGTCGAATGTAATGTTTGTGGATTAACCATTAGTGGCTGCACCTCATCTTGCTCGTGCCTATCATCATTTATTCCCATTGGATTTATTTGAACCAGTAAATGGTAGTGGTAGTTTTAGTGAAACATCATTAGATAATCAAGAAAAATCAAAAGAAACTATTGATTCAGCAGATAGCGTGGATCATCAACAACGTCTTTGCTTTGGTTGTAATGTAATTATACCGTCCAAAATTCCTGGATATCAATGTCCTAAATGT AATTCATATTCCGGTCACTCATGTGATGCTGTTCTACATGATTCCATTCATTCACGTCCTGGATGTTTTACGTTGTTGTAATTGAAGC ACATGATGTTGATGAATT AGATATTTTTTTATTTGGACAGG TAATTC ACC AAAAT ATAAAACGGC ] [-] EMBL CD073059 [ TTAGTGNAACATCATTAGATAATCAAGAAAAATCAAAAGAAACTATTGATTCAGCAGATAGCGTGGATCATCAACAACGTCTTTGCTTTGGTTGTAATGTAATTATACCGTCCAAAATTCCTGGATATCAATGTCCTAAATGTAAATTCATATT CTGTCATTCATGTGATGCTGTTTTACATGATTCCATTCATTCATGTCCTGGATGTTTAACGTTGTTGTAATTGATGCAACATGATGTTGATGAATTGAGATAATTTTATAATTGAACAGGAAAATTCTACCAAAAATAAAAAAACGGCCAGTCAAATTGCATTTTTACTCTACAATATGATAGAAACCCCCCTATGAGAAATGTTGTTCTCTTTTGTTAACATGTTTTGCTGTTTGACTGTAAAATAAATGTTCCA] consensusID : consensus_5219#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 127 fasta sequence [GTAAATTCATATTCTGTCATTCATGTGATGCTGTTCTACATGATTCCATTCATTCATGTCCTGGATGTTTAACGTTGTTGTAATTGATGCAACATGATGTTGATGAATTGAGATAATTTTATAATTG] [+] EMBL CD146337 [GTAAATTCATATTCTGTCATTCATGTGATGCTGTTCTACATGATTCCATTCATTCATGTCCTGGATGTTTAACGTTGTTGTAATTGATGCAACATGATGTTGATGAATTGAGATAATTTTATAATTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5219#0 TGCATGTCCAAGATGTCACTCTGCTTATTGTGAATTACCAGTCGAATGTAATGTTTGTGG 60 consensus_5219#1 ------------------------------------------------------------ consensus_5219#0 ATTAACCATTAGTGGCTGCACCTCATCTTGCTCGTGCCTATCATCATTTATTCCCATTGG 120 consensus_5219#1 ------------------------------------------------------------ consensus_5219#0 ATTTATTTGAACCAGTAAATGGTAGTGGTAGTTTTAGTGAAACATCATTAGATAATCAAG 180 consensus_5219#1 ------------------------------------------------------------ consensus_5219#0 AAAAATCAAAAGAAACTATTGATTCAGCAGATAGCGTGGATCATCAACAACGTCTTTGCT 240 consensus_5219#1 ------------------------------------------------------------ consensus_5219#0 TTGGTTGTAATGTAATTATACCGTCCAAAATTCCTGGATATCAATGTCCTAAATGTAATT 300 consensus_5219#1 ----------------------------------------------------GTA-AATT 7 * **** consensus_5219#0 CATATTCCGGTCACTCATGTGATGCTGTTCTACATGATTCCATTCATTCACGTCCTGGAT 360 consensus_5219#1 CATATTCTG-TCATTCATGTGATGCTGTTCTACATGATTCCATTCATTCATGTCCTGGAT 66 ******* * *** ************************************ ********* consensus_5219#0 GTTTTACGTTGTTGTAATTGAAGCA-CATGATGTTGATGAATT-AGATATTTTTTTATTT 418 consensus_5219#1 GTTTAACGTTGTTGTAATTGATGCAACATGATGTTGATGAATTGAGATAATTTTATAATT 126 **** **************** *** ***************** ***** **** ** ** consensus_5219#0 GGACAGGTAATTCACCAAAATATAAAACGGCCAGTCAAATTGCATTTTTACTCTACAATA 478 consensus_5219#1 G----------------------------------------------------------- 127 * consensus_5219#0 TGATAGAAACCCCCCTATGAGAAATGTTGTTCTCTTTTGTTAACATGTTTTGCTGTTTGA 538 consensus_5219#1 ------------------------------------------------------------ consensus_5219#0 CTGTAAAATAAATGTTCCA 557 consensus_5219#1 ------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||